Wall clock time and date at job start Tue Mar 31 2020 13:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47113 * 2 1 4 4 C 1.34709 * 117.00167 * 179.97438 * 3 2 1 5 5 O 1.21469 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.47735 * 120.00192 * 180.02562 * 4 3 2 7 7 C 1.39626 * 120.53369 * 0.02562 * 6 4 3 8 8 N 1.31650 * 120.71681 * 179.97438 * 7 6 4 9 9 C 1.31895 * 121.96020 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.49802 * 179.97438 * 9 8 7 11 11 C 1.38947 * 120.99775 * 359.97438 * 9 8 7 12 12 N 1.40001 * 120.41816 * 179.97438 * 11 9 8 13 13 C 1.34774 * 120.00390 * 204.34553 * 12 11 9 14 14 O 1.21593 * 119.99588 * 5.67602 * 13 12 11 15 15 N 1.34769 * 120.00514 * 185.68484 * 13 12 11 16 16 C 1.46505 * 120.00300 * 180.02562 * 15 13 12 17 17 C 1.52994 * 109.47105 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47088 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00120 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99951 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47591 * 59.99550 * 22 20 18 24 24 H 1.48494 * 109.47341 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46912 * 299.99579 * 22 20 18 26 26 C 1.39013 * 119.16408 * 359.74658 * 11 9 8 27 27 H 1.09000 * 109.47069 * 59.99745 * 1 2 3 28 28 H 1.08994 * 109.47516 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47133 * 300.00175 * 1 2 3 30 30 H 1.09000 * 109.46802 * 119.99776 * 2 1 3 31 31 H 1.09003 * 109.47133 * 239.99825 * 2 1 3 32 32 H 1.08000 * 119.63696 * 359.97438 * 7 6 4 33 33 H 1.08999 * 109.47333 * 89.99863 * 10 9 8 34 34 H 1.09005 * 109.46488 * 209.99851 * 10 9 8 35 35 H 1.08999 * 109.47365 * 329.99559 * 10 9 8 36 36 H 0.97005 * 119.99902 * 24.34173 * 12 11 9 37 37 H 0.97000 * 119.99791 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.46690 * 299.99003 * 16 15 13 39 39 H 1.08994 * 109.47096 * 59.99126 * 16 15 13 40 40 H 1.09003 * 109.47368 * 299.99406 * 17 16 15 41 41 H 1.08994 * 109.47730 * 59.99670 * 17 16 15 42 42 H 0.97001 * 120.00028 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.88487 * 180.27176 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9141 2.9106 0.0011 7 6 3.0739 4.0258 0.0017 8 7 3.5732 5.2439 0.0028 9 6 4.8734 5.4655 0.0028 10 6 5.3846 6.8832 0.0035 11 6 5.7790 4.4117 0.0023 12 7 7.1566 4.6608 0.0018 13 6 8.0089 3.7345 -0.4798 14 8 7.5775 2.7277 -1.0077 15 7 9.3392 3.9239 -0.3761 16 6 10.2656 2.9172 -0.9002 17 6 11.7055 3.3735 -0.6571 18 6 12.6584 2.3377 -1.1956 19 1 12.2753 1.4430 -1.6640 20 6 14.0193 2.5320 -1.0904 21 7 14.4859 3.6215 -0.5205 22 14 15.2005 1.2483 -1.7585 23 1 14.9741 1.0782 -3.2163 24 1 16.5981 1.6917 -1.5236 25 1 14.9684 -0.0453 -1.0673 26 6 5.2997 3.1068 0.0071 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.0028 3.8875 0.0013 33 1 5.5078 7.2246 1.0312 34 1 6.3451 6.9233 -0.5104 35 1 4.6706 7.5271 -0.5101 36 1 7.4978 5.5003 0.3481 37 1 9.6833 4.7272 0.0448 38 1 10.0946 1.9674 -0.3933 39 1 10.0998 2.7930 -1.9702 40 1 11.8762 4.3232 -1.1642 41 1 11.8715 3.4981 0.4129 42 1 15.4433 3.7584 -0.4468 43 1 5.9787 2.2668 0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345139358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:27 Heat of formation + Delta-G solvation = -87.486978 kcal Electronic energy + Delta-G solvation = -25909.066120 eV Core-core repulsion = 21954.356284 eV Total energy + Delta-G solvation = -3954.709835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.35102 -40.39345 -39.36426 -36.82402 -35.66831 -34.87533 -33.42232 -32.98225 -31.96411 -31.14879 -29.46888 -28.31019 -25.08788 -24.42149 -23.74264 -22.87479 -21.38363 -21.04521 -20.85327 -18.73470 -18.47070 -17.32389 -16.81075 -16.70009 -16.39703 -16.25267 -15.64766 -15.40607 -14.84854 -14.58737 -14.55465 -14.28723 -13.83983 -13.76338 -13.50470 -13.25958 -13.13422 -12.75875 -12.60320 -12.49039 -12.32155 -12.23389 -11.95530 -11.28446 -11.27030 -11.03638 -10.98246 -10.81845 -10.69567 -10.39715 -10.29745 -9.89116 -9.72257 -9.55087 -9.32783 -8.77120 -8.47109 -8.25929 -6.13624 -4.16663 0.26306 1.00968 2.27033 2.28983 2.60924 3.17261 3.29297 3.33131 3.36750 3.60704 3.93038 4.22916 4.36317 4.39492 4.43505 4.60502 4.64862 4.72608 4.86089 4.92127 4.95336 5.23685 5.24642 5.28097 5.29880 5.42736 5.57833 5.65435 5.70640 5.96334 5.97854 6.11722 6.16967 6.27553 6.52628 6.65198 6.75320 6.86936 7.46792 7.49820 7.54468 7.62249 7.84364 8.02090 8.23183 8.60595 8.88881 9.48440 10.97860 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002379 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.858256 B =11768.297307 C =13446.930033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.516 3.484 5 O -0.493 6.493 6 C -0.164 4.164 7 C 0.133 3.867 8 N -0.469 5.469 9 C 0.123 3.877 10 C -0.110 4.110 11 C 0.124 3.876 12 N -0.681 5.681 13 C 0.694 3.306 14 O -0.573 6.573 15 N -0.726 5.726 16 C 0.137 3.863 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.025 4.025 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.171 0.829 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.411 0.589 37 H 0.397 0.603 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.124 3.962 3.863 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.272 6.272 4 C 0.359 3.641 5 O -0.381 6.381 6 C -0.168 4.168 7 C -0.028 4.028 8 N -0.177 5.177 9 C -0.017 4.017 10 C -0.167 4.167 11 C 0.024 3.976 12 N -0.329 5.329 13 C 0.394 3.606 14 O -0.451 6.451 15 N -0.379 5.379 16 C 0.015 3.985 17 C -0.024 4.024 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.053 4.053 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.247 0.753 37 H 0.230 0.770 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -26.535 3.488 3.415 26.980 hybrid contribution 1.699 -0.794 0.005 1.876 sum -24.836 2.694 3.420 25.214 Atomic orbital electron populations 1.21811 0.92420 1.03081 1.03601 1.23072 0.95360 0.79760 1.02953 1.86507 1.23533 1.32711 1.84459 1.20839 0.80684 0.89427 0.73173 1.90894 1.60282 1.42133 1.44780 1.19980 0.94146 0.91704 1.10922 1.23004 1.00518 0.86150 0.93091 1.67569 1.12961 1.23849 1.13359 1.21305 0.88400 0.95668 0.96373 1.20771 1.01831 0.90542 1.03536 1.18182 0.83755 0.93642 1.02003 1.42707 1.03430 1.21261 1.65474 1.16117 0.81891 0.83120 0.79433 1.90913 1.76646 1.28663 1.48852 1.45607 1.03401 1.25913 1.62994 1.21739 0.89410 0.89432 0.97957 1.19331 0.87688 0.97571 0.97838 1.20987 0.90818 1.05334 1.39016 0.92214 1.24991 0.98441 0.95706 0.95116 1.69938 1.13710 1.26045 1.43566 0.86552 0.79644 0.81650 0.79585 1.20083 1.21237 1.20068 1.22099 0.94130 0.97907 0.91172 0.91367 0.90133 0.91390 0.91014 0.90965 0.81209 0.89723 0.90518 0.89484 0.75256 0.76963 0.92281 0.92335 0.95860 0.95854 0.92750 0.80761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.16 0.38 -0.43 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.35 -3.76 9.49 -40.52 -0.38 -4.14 16 4 C 0.52 6.89 7.91 34.61 0.27 7.17 16 5 O -0.49 -8.17 16.21 -19.24 -0.31 -8.48 16 6 C -0.16 -2.11 5.89 -104.86 -0.62 -2.73 16 7 C 0.13 1.44 10.78 -17.11 -0.18 1.25 16 8 N -0.47 -5.31 10.25 -8.98 -0.09 -5.40 16 9 C 0.12 1.33 6.80 -82.30 -0.56 0.77 16 10 C -0.11 -0.79 9.61 36.01 0.35 -0.44 16 11 C 0.12 1.57 6.42 -83.58 -0.54 1.04 16 12 N -0.68 -8.17 4.99 -14.16 -0.07 -8.24 16 13 C 0.69 11.32 8.38 -86.93 -0.73 10.59 16 14 O -0.57 -11.60 13.54 5.28 0.07 -11.53 16 15 N -0.73 -11.80 5.56 -65.23 -0.36 -12.16 16 16 C 0.14 2.80 5.61 -4.04 -0.02 2.78 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 18 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 22 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.03 -0.37 8.36 -38.66 -0.32 -0.69 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.17 1.40 7.62 -52.49 -0.40 1.00 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.48 6.95 -51.93 -0.36 0.12 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.41 3.40 7.40 -40.82 -0.30 3.10 16 37 H 0.40 5.30 8.49 -40.82 -0.35 4.96 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.18 3.08 5.56 -52.49 -0.29 2.78 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -33.91 371.71 -8.02 -41.93 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.89 Total: 3.95 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -2.29 Total: 7.22 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.21 Total: -50.72 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.62 Total: -24.15 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.91 -8.02 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345139358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.561 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds