Wall clock time and date at job start Tue Mar 31 2020 13:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45195 * 109.47113 * 2 1 4 4 C 1.34709 * 117.00167 * 179.97438 * 3 2 1 5 5 O 1.21469 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.47735 * 120.00192 * 180.02562 * 4 3 2 7 7 C 1.39626 * 120.53369 * 0.02562 * 6 4 3 8 8 N 1.31650 * 120.71681 * 179.97438 * 7 6 4 9 9 C 1.31895 * 121.96020 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.49802 * 179.97438 * 9 8 7 11 11 C 1.38947 * 120.99775 * 359.97438 * 9 8 7 12 12 N 1.40001 * 120.41816 * 179.97438 * 11 9 8 13 13 C 1.34774 * 120.00390 * 204.34553 * 12 11 9 14 14 O 1.21593 * 119.99588 * 5.67602 * 13 12 11 15 15 N 1.34769 * 120.00514 * 185.68484 * 13 12 11 16 16 C 1.46505 * 120.00300 * 180.02562 * 15 13 12 17 17 C 1.52994 * 109.47105 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47088 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00120 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99951 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00110 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47591 * 59.99550 * 22 20 18 24 24 H 1.48494 * 109.47341 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46912 * 299.99579 * 22 20 18 26 26 C 1.39013 * 119.16408 * 359.74658 * 11 9 8 27 27 H 1.09000 * 109.47069 * 59.99745 * 1 2 3 28 28 H 1.08994 * 109.47516 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47133 * 300.00175 * 1 2 3 30 30 H 1.09000 * 109.46802 * 119.99776 * 2 1 3 31 31 H 1.09003 * 109.47133 * 239.99825 * 2 1 3 32 32 H 1.08000 * 119.63696 * 359.97438 * 7 6 4 33 33 H 1.08999 * 109.47333 * 89.99863 * 10 9 8 34 34 H 1.09005 * 109.46488 * 209.99851 * 10 9 8 35 35 H 1.08999 * 109.47365 * 329.99559 * 10 9 8 36 36 H 0.97005 * 119.99902 * 24.34173 * 12 11 9 37 37 H 0.97000 * 119.99791 * 359.97438 * 15 13 12 38 38 H 1.09004 * 109.46690 * 299.99003 * 16 15 13 39 39 H 1.08994 * 109.47096 * 59.99126 * 16 15 13 40 40 H 1.09003 * 109.47368 * 299.99406 * 17 16 15 41 41 H 1.08994 * 109.47730 * 59.99670 * 17 16 15 42 42 H 0.97001 * 120.00028 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.88487 * 180.27176 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9141 2.9106 0.0011 7 6 3.0739 4.0258 0.0017 8 7 3.5732 5.2439 0.0028 9 6 4.8734 5.4655 0.0028 10 6 5.3846 6.8832 0.0035 11 6 5.7790 4.4117 0.0023 12 7 7.1566 4.6608 0.0018 13 6 8.0089 3.7345 -0.4798 14 8 7.5775 2.7277 -1.0077 15 7 9.3392 3.9239 -0.3761 16 6 10.2656 2.9172 -0.9002 17 6 11.7055 3.3735 -0.6571 18 6 12.6584 2.3377 -1.1956 19 1 12.2753 1.4430 -1.6640 20 6 14.0193 2.5320 -1.0904 21 7 14.4859 3.6215 -0.5205 22 14 15.2005 1.2483 -1.7585 23 1 14.9741 1.0782 -3.2163 24 1 16.5981 1.6917 -1.5236 25 1 14.9684 -0.0453 -1.0673 26 6 5.2997 3.1068 0.0071 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.0028 3.8875 0.0013 33 1 5.5078 7.2246 1.0312 34 1 6.3451 6.9233 -0.5104 35 1 4.6706 7.5271 -0.5101 36 1 7.4978 5.5003 0.3481 37 1 9.6833 4.7272 0.0448 38 1 10.0946 1.9674 -0.3933 39 1 10.0998 2.7930 -1.9702 40 1 11.8762 4.3232 -1.1642 41 1 11.8715 3.4981 0.4129 42 1 15.4433 3.7584 -0.4468 43 1 5.9787 2.2668 0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345139358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:26 Heat of formation + Delta-G solvation = -110.519530 kcal Electronic energy + Delta-G solvation = -25910.064886 eV Core-core repulsion = 21954.356284 eV Total energy + Delta-G solvation = -3955.708602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.39257 -41.47506 -40.49507 -37.80363 -37.02936 -36.27545 -34.91255 -34.34740 -32.61200 -32.38007 -31.00517 -29.20282 -26.85966 -25.21186 -24.96469 -23.60223 -22.98531 -22.29453 -22.04405 -19.93047 -19.52529 -18.49969 -18.37961 -17.70797 -17.62845 -17.31148 -16.74430 -16.61729 -16.48713 -15.93835 -15.76137 -15.24525 -15.16725 -14.97352 -14.68579 -14.39155 -14.25343 -13.65562 -13.41627 -13.37112 -13.24353 -13.15909 -12.97345 -12.95322 -12.55673 -12.55358 -12.39362 -12.15446 -12.08761 -11.72252 -11.58696 -11.57467 -11.36211 -10.87195 -10.61418 -10.60281 -10.17979 -9.31893 -8.24679 -6.34414 -0.69833 -0.01260 1.26820 1.30722 1.41931 1.43522 1.48708 1.52726 1.91238 2.40107 2.62230 3.04002 3.10406 3.15851 3.46585 3.54233 3.75358 3.86338 3.99638 4.06704 4.09021 4.33876 4.42365 4.48600 4.60558 4.67426 4.75920 4.81462 4.85038 4.92267 4.94196 5.01971 5.09858 5.19769 5.21621 5.35077 5.45808 5.52338 5.58420 5.73589 5.82286 6.15622 6.51418 6.69233 6.77828 6.86091 7.32068 7.34676 8.86695 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002379 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.858256 B =11768.297307 C =13446.930033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.345 6.345 4 C 0.519 3.481 5 O -0.537 6.537 6 C -0.178 4.178 7 C 0.151 3.849 8 N -0.473 5.473 9 C 0.142 3.858 10 C -0.111 4.111 11 C 0.107 3.893 12 N -0.658 5.658 13 C 0.696 3.304 14 O -0.615 6.615 15 N -0.719 5.719 16 C 0.158 3.842 17 C 0.024 3.976 18 C -0.548 4.548 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.962 3.038 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.270 1.270 26 C -0.046 4.046 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.431 0.569 37 H 0.413 0.587 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.013 0.987 41 H 0.011 0.989 42 H 0.266 0.734 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.711 5.409 3.992 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.261 6.261 4 C 0.364 3.636 5 O -0.427 6.427 6 C -0.182 4.182 7 C -0.008 4.008 8 N -0.182 5.182 9 C 0.001 3.999 10 C -0.168 4.168 11 C 0.008 3.992 12 N -0.308 5.308 13 C 0.397 3.603 14 O -0.495 6.495 15 N -0.373 5.373 16 C 0.034 3.966 17 C -0.014 4.014 18 C -0.586 4.586 19 H 0.076 0.924 20 C -0.190 4.190 21 N -0.563 5.563 22 Si 0.787 3.213 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.195 1.195 26 C -0.074 4.074 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.217 0.783 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.272 0.728 37 H 0.249 0.751 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -28.174 5.000 3.573 28.836 hybrid contribution 2.061 -1.201 -0.008 2.385 sum -26.113 3.799 3.565 26.628 Atomic orbital electron populations 1.21829 0.89562 1.04552 1.04122 1.23398 0.97497 0.78601 1.02654 1.86509 1.21774 1.34168 1.83692 1.21010 0.81286 0.89221 0.72069 1.90871 1.61387 1.43417 1.47065 1.19997 0.93717 0.92224 1.12247 1.23421 1.01498 0.85268 0.90616 1.67752 1.13018 1.23640 1.13814 1.21874 0.87854 0.96792 0.93344 1.20964 1.02458 0.87949 1.05400 1.18278 0.83984 0.93502 1.03462 1.42313 1.02828 1.21079 1.64615 1.16152 0.81900 0.83158 0.79138 1.90910 1.77300 1.30649 1.50633 1.45198 1.03150 1.25764 1.63167 1.21177 0.88400 0.89742 0.97269 1.19130 0.89223 0.96433 0.96574 1.21420 0.91934 1.06038 1.39222 0.92437 1.25823 1.00158 0.97708 0.95343 1.70034 1.14194 1.27599 1.44487 0.85540 0.77525 0.79141 0.79097 1.19432 1.20549 1.19536 1.21908 0.94684 0.97931 0.92918 0.90916 0.88182 0.90723 0.91242 0.91546 0.78338 0.87236 0.89350 0.88489 0.72849 0.75080 0.93609 0.93398 0.96834 0.97028 0.92531 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.85 6.19 71.98 0.45 1.30 16 3 O -0.34 -7.16 9.49 -56.19 -0.53 -7.69 16 4 C 0.52 14.32 7.91 70.33 0.56 14.88 16 5 O -0.54 -18.95 16.21 19.94 0.32 -18.63 16 6 C -0.18 -4.63 5.89 -20.02 -0.12 -4.75 16 7 C 0.15 3.01 10.78 85.06 0.92 3.93 16 8 N -0.47 -9.50 10.25 -182.33 -1.87 -11.37 16 9 C 0.14 2.73 6.80 42.72 0.29 3.02 16 10 C -0.11 -1.19 9.61 71.24 0.68 -0.50 16 11 C 0.11 2.63 6.42 38.19 0.25 2.88 16 12 N -0.66 -15.20 4.99 -316.96 -1.58 -16.78 16 13 C 0.70 22.92 8.38 179.06 1.50 24.42 16 14 O -0.61 -25.93 13.54 -4.01 -0.05 -25.98 16 15 N -0.72 -23.40 5.56 -478.54 -2.66 -26.06 16 16 C 0.16 6.62 5.61 86.38 0.48 7.11 16 17 C 0.02 1.17 5.09 29.85 0.15 1.32 16 18 C -0.55 -30.20 9.11 25.60 0.23 -29.97 16 19 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.92 -53.23 13.29 21.45 0.28 -52.95 16 22 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 C -0.05 -1.41 8.36 22.87 0.19 -1.22 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.20 2.70 7.62 -2.91 -0.02 2.68 16 33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.78 6.95 -2.38 -0.02 0.76 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.43 6.18 7.40 -92.70 -0.69 5.49 16 37 H 0.41 10.72 8.49 -92.71 -0.79 9.93 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.14 5.31 5.56 -2.91 -0.02 5.29 16 Total: -1.00 -75.51 371.71 2.31 -73.21 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.41 Total: 17.98 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 6.79 Total: 22.83 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -5.82 Total: -107.15 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -0.26 Total: -52.30 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.51 2.31 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345139358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.314 kcal (2) G-P(sol) polarization free energy of solvation -75.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds