Wall clock time and date at job start Tue Mar 31 2020 13:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99923 * 2 1 4 4 C 1.34773 * 119.99939 * 180.02562 * 2 1 3 5 5 O 1.21279 * 120.00118 * 359.97438 * 4 2 1 6 6 C 1.50706 * 120.00085 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47133 * 180.02562 * 6 4 2 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99823 * 180.02562 * 7 6 4 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.08999 * 109.47112 * 269.99846 * 1 2 3 28 28 H 1.09002 * 109.47419 * 29.99759 * 1 2 3 29 29 H 1.09001 * 109.47030 * 149.99691 * 1 2 3 30 30 H 1.08999 * 109.46988 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47398 * 299.99845 * 3 2 1 32 32 H 1.08993 * 109.47048 * 60.00428 * 3 2 1 33 33 H 1.08995 * 109.47082 * 59.99968 * 6 4 2 34 34 H 1.09002 * 109.47217 * 300.00112 * 6 4 2 35 35 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 36 36 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 37 37 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 38 38 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 40 40 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 41 41 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 42 42 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 43 43 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1482 -2.5880 -0.0023 8 8 3.3601 -3.5098 -0.0021 9 7 5.4732 -2.8343 -0.0024 10 6 5.9385 -4.1503 -0.0029 11 7 5.0742 -5.1516 -0.0086 12 6 5.4711 -6.4099 -0.0033 13 6 6.8142 -6.7311 0.0025 14 6 7.7571 -5.7129 0.0021 15 6 7.3109 -4.3986 -0.0047 16 8 8.1985 -3.3685 -0.0048 17 6 9.5866 -3.7082 0.0017 18 6 10.4249 -2.4283 -0.0001 19 6 11.8887 -2.7865 0.0074 20 1 12.1908 -3.8234 0.0133 21 6 12.8422 -1.7907 0.0078 22 7 14.1196 -2.1033 0.0148 23 14 12.3196 0.0028 -0.0018 24 1 12.1747 0.4835 1.3957 25 1 13.3482 0.8144 -0.7004 26 1 11.0201 0.1360 -0.7082 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2691 1.0696 -0.0005 31 1 1.9342 1.8403 -0.8900 32 1 1.9342 1.8402 0.8900 33 1 4.0096 -0.6536 0.8888 34 1 4.0089 -0.6532 -0.8911 35 1 6.1036 -2.0970 -0.0022 36 1 4.7350 -7.2002 -0.0037 37 1 7.1277 -7.7646 0.0073 38 1 8.8134 -5.9379 0.0061 39 1 9.8208 -4.2968 -0.8853 40 1 9.8140 -4.2905 0.8947 41 1 10.1974 -1.8463 -0.8932 42 1 10.1907 -1.8393 0.8867 43 1 14.7904 -1.4026 0.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345967192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:30 Heat of formation + Delta-G solvation = -48.813136 kcal Electronic energy + Delta-G solvation = -26298.019378 eV Core-core repulsion = 22344.986567 eV Total energy + Delta-G solvation = -3953.032811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01833 -40.22930 -38.76966 -37.80152 -35.78105 -34.71165 -33.45916 -31.94933 -31.43640 -30.73950 -29.17344 -28.05010 -26.15483 -25.64373 -23.65708 -22.81004 -21.16461 -20.45587 -19.49530 -18.32813 -17.81258 -17.66791 -16.59641 -16.56471 -16.51838 -16.14103 -15.83380 -15.46773 -15.15514 -14.84399 -14.29658 -14.03278 -14.00128 -13.73176 -13.48827 -13.25208 -13.07239 -12.98589 -12.88818 -12.58050 -12.37913 -12.27901 -12.12593 -12.05843 -11.26114 -11.00657 -10.69006 -10.41760 -10.29462 -10.17350 -9.96030 -9.83201 -9.45919 -9.24615 -9.01764 -8.95580 -8.71669 -7.70331 -6.22130 -4.23939 1.19382 1.42320 2.38509 2.42967 2.73208 3.02058 3.19905 3.27818 3.30207 3.43103 3.98962 4.10007 4.28854 4.29652 4.62241 4.73266 4.86551 4.88223 4.91748 4.93144 4.98084 5.10783 5.11540 5.22814 5.24608 5.28148 5.45056 5.50243 5.76144 5.77886 6.02447 6.08949 6.16126 6.28879 6.37181 6.56170 6.92012 6.96510 7.09729 7.22516 7.48782 7.62616 7.92477 8.08501 8.28993 8.36421 8.78257 9.37319 10.90325 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.003044 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.988683 B = 9197.437203 C =11612.056598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.073 3.927 4 C 0.513 3.487 5 O -0.490 6.490 6 C -0.164 4.164 7 C 0.499 3.501 8 O -0.433 6.433 9 N -0.655 5.655 10 C 0.332 3.668 11 N -0.444 5.444 12 C 0.078 3.922 13 C -0.160 4.160 14 C -0.146 4.146 15 C 0.064 3.936 16 O -0.320 6.320 17 C 0.073 3.927 18 C -0.007 4.007 19 C -0.529 4.529 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.882 3.118 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.421 0.579 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.057 4.516 -0.139 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.366 5.366 3 C -0.070 4.070 4 C 0.299 3.701 5 O -0.361 6.361 6 C -0.207 4.207 7 C 0.282 3.718 8 O -0.298 6.298 9 N -0.305 5.305 10 C 0.099 3.901 11 N -0.159 5.159 12 C -0.078 4.078 13 C -0.182 4.182 14 C -0.172 4.172 15 C 0.013 3.987 16 O -0.233 6.233 17 C -0.001 4.001 18 C -0.044 4.044 19 C -0.567 4.567 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.709 3.291 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.188 1.188 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.259 0.741 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.785 3.790 -0.149 24.085 hybrid contribution 1.524 1.164 0.036 1.918 sum -22.260 4.954 -0.113 22.805 Atomic orbital electron populations 1.21587 0.78941 1.03100 1.01859 1.47748 1.07182 1.06172 1.75488 1.21886 0.97525 0.85400 1.02195 1.20000 0.89126 0.83594 0.77401 1.90877 1.69252 1.30031 1.45946 1.21632 0.95025 0.97211 1.06868 1.20083 0.81995 0.90904 0.78810 1.90949 1.53326 1.44563 1.40920 1.43446 1.08146 1.05749 1.73124 1.17780 0.85556 0.86103 1.00686 1.67649 1.35510 0.99289 1.13466 1.22442 0.94416 0.92317 0.98655 1.21911 0.93686 1.00088 1.02479 1.21629 1.01569 0.91081 1.02941 1.19529 0.89072 0.88868 1.01221 1.86034 1.18338 1.30995 1.87957 1.23136 0.74856 1.01380 1.00690 1.19579 0.94710 0.92298 0.97860 1.20815 0.87676 0.95560 1.52663 0.90730 1.24943 0.94698 0.99308 0.94074 1.69888 1.00015 1.33593 1.49853 0.86743 0.78853 0.84831 0.78718 1.20061 1.21166 1.18795 0.92802 0.91295 0.90454 0.90082 0.91849 0.91858 0.85778 0.85784 0.74145 0.82564 0.84690 0.83618 0.92331 0.92353 0.95386 0.95824 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.48 59.85 0.63 1.26 16 2 N -0.63 -5.19 3.27 -189.52 -0.62 -5.81 16 3 C 0.07 0.31 10.60 59.85 0.63 0.95 16 4 C 0.51 6.00 7.67 -10.98 -0.08 5.92 16 5 O -0.49 -8.29 13.76 -18.96 -0.26 -8.55 16 6 C -0.16 -1.47 4.50 -29.03 -0.13 -1.60 16 7 C 0.50 7.04 7.79 -10.99 -0.09 6.95 16 8 O -0.43 -8.19 12.43 -18.96 -0.24 -8.43 16 9 N -0.66 -8.95 5.39 -11.29 -0.06 -9.01 16 10 C 0.33 5.37 7.45 -154.43 -1.15 4.22 16 11 N -0.44 -7.56 7.88 -12.22 -0.10 -7.66 16 12 C 0.08 1.09 11.17 -17.55 -0.20 0.89 16 13 C -0.16 -2.01 10.10 -39.44 -0.40 -2.40 16 14 C -0.15 -2.08 9.14 -39.17 -0.36 -2.44 16 15 C 0.06 1.03 6.72 -38.91 -0.26 0.77 16 16 O -0.32 -5.44 9.39 -19.66 -0.18 -5.63 16 17 C 0.07 1.36 4.70 37.16 0.17 1.53 16 18 C -0.01 -0.15 4.41 -27.88 -0.12 -0.28 16 19 C -0.53 -14.11 9.66 -34.44 -0.33 -14.44 16 20 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 23 Si 0.88 20.32 27.47 -169.99 -4.67 15.65 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 29 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 30 H 0.08 0.24 5.77 -51.93 -0.30 -0.06 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.12 0.72 7.79 -51.93 -0.40 0.32 16 34 H 0.12 0.72 7.79 -51.93 -0.40 0.31 16 35 H 0.42 4.66 8.04 -40.82 -0.33 4.34 16 36 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.15 1.94 6.44 -52.49 -0.34 1.60 16 39 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 40 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 41 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 42 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -37.39 362.47 -7.52 -44.91 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.85 Total: 1.32 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.78 Total: 3.23 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.00 Total: -47.97 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.68 Total: -22.61 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.67 Total: 15.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.39 -7.52 -44.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345967192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.903 kcal (2) G-P(sol) polarization free energy of solvation -37.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds