Wall clock time and date at job start Tue Mar 31 2020 13:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99923 * 2 1 4 4 C 1.34773 * 119.99939 * 180.02562 * 2 1 3 5 5 O 1.21279 * 120.00118 * 359.97438 * 4 2 1 6 6 C 1.50706 * 120.00085 * 179.97438 * 4 2 1 7 7 C 1.50699 * 109.47133 * 180.02562 * 6 4 2 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99823 * 180.02562 * 7 6 4 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.08999 * 109.47112 * 269.99846 * 1 2 3 28 28 H 1.09002 * 109.47419 * 29.99759 * 1 2 3 29 29 H 1.09001 * 109.47030 * 149.99691 * 1 2 3 30 30 H 1.08999 * 109.46988 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47398 * 299.99845 * 3 2 1 32 32 H 1.08993 * 109.47048 * 60.00428 * 3 2 1 33 33 H 1.08995 * 109.47082 * 59.99968 * 6 4 2 34 34 H 1.09002 * 109.47217 * 300.00112 * 6 4 2 35 35 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 36 36 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 37 37 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 38 38 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 40 40 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 41 41 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 42 42 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 43 43 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1482 -2.5880 -0.0023 8 8 3.3601 -3.5098 -0.0021 9 7 5.4732 -2.8343 -0.0024 10 6 5.9385 -4.1503 -0.0029 11 7 5.0742 -5.1516 -0.0086 12 6 5.4711 -6.4099 -0.0033 13 6 6.8142 -6.7311 0.0025 14 6 7.7571 -5.7129 0.0021 15 6 7.3109 -4.3986 -0.0047 16 8 8.1985 -3.3685 -0.0048 17 6 9.5866 -3.7082 0.0017 18 6 10.4249 -2.4283 -0.0001 19 6 11.8887 -2.7865 0.0074 20 1 12.1908 -3.8234 0.0133 21 6 12.8422 -1.7907 0.0078 22 7 14.1196 -2.1033 0.0148 23 14 12.3196 0.0028 -0.0018 24 1 12.1747 0.4835 1.3957 25 1 13.3482 0.8144 -0.7004 26 1 11.0201 0.1360 -0.7082 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2691 1.0696 -0.0005 31 1 1.9342 1.8403 -0.8900 32 1 1.9342 1.8402 0.8900 33 1 4.0096 -0.6536 0.8888 34 1 4.0089 -0.6532 -0.8911 35 1 6.1036 -2.0970 -0.0022 36 1 4.7350 -7.2002 -0.0037 37 1 7.1277 -7.7646 0.0073 38 1 8.8134 -5.9379 0.0061 39 1 9.8208 -4.2968 -0.8853 40 1 9.8140 -4.2905 0.8947 41 1 10.1974 -1.8463 -0.8932 42 1 10.1907 -1.8393 0.8867 43 1 14.7904 -1.4026 0.0147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345967192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:29 Heat of formation + Delta-G solvation = -74.814697 kcal Electronic energy + Delta-G solvation = -26299.146891 eV Core-core repulsion = 22344.986567 eV Total energy + Delta-G solvation = -3954.160324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10356 -41.17430 -39.82579 -39.02183 -36.55230 -35.83493 -35.36027 -33.08836 -32.80556 -31.99209 -30.28007 -28.57484 -27.29689 -26.78831 -24.90060 -23.98326 -22.61747 -21.68495 -20.34482 -19.59125 -19.02275 -18.69069 -18.21629 -17.54728 -17.36096 -17.05669 -16.97165 -16.52233 -16.24826 -16.10277 -15.82518 -15.25678 -15.03013 -14.81059 -14.64637 -14.26505 -14.21090 -14.07460 -13.74846 -13.38854 -13.34808 -13.31495 -12.95288 -12.87250 -12.82274 -12.67761 -12.17102 -11.84729 -11.78028 -11.61523 -11.44702 -11.32393 -10.82104 -10.77731 -10.41430 -10.06975 -9.66064 -8.85322 -8.30628 -6.37922 0.09750 0.28066 1.41205 1.42909 1.54718 1.58169 1.61744 1.72709 2.09967 2.24820 2.37550 2.87541 3.05143 3.29149 3.47056 3.70214 3.84638 4.05586 4.15118 4.23040 4.26588 4.28542 4.31979 4.43197 4.44818 4.48426 4.54490 4.69757 4.81235 4.92152 4.95042 5.01036 5.08888 5.14281 5.28622 5.36251 5.50824 5.52758 5.60819 6.19041 6.22146 6.29167 6.34673 6.69034 6.96945 7.18554 7.27442 7.36673 8.84993 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.003044 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.988683 B = 9197.437203 C =11612.056598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.624 5.624 3 C 0.064 3.936 4 C 0.503 3.497 5 O -0.557 6.557 6 C -0.152 4.152 7 C 0.494 3.506 8 O -0.488 6.488 9 N -0.648 5.648 10 C 0.316 3.684 11 N -0.479 5.479 12 C 0.072 3.928 13 C -0.147 4.147 14 C -0.150 4.150 15 C 0.046 3.954 16 O -0.320 6.320 17 C 0.085 3.915 18 C -0.004 4.004 19 C -0.537 4.537 20 H 0.040 0.960 21 C 0.009 3.991 22 N -0.946 5.946 23 Si 0.951 3.049 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.240 1.240 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.432 0.568 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.154 0.846 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.859 6.754 -0.151 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.358 5.358 3 C -0.077 4.077 4 C 0.290 3.710 5 O -0.434 6.434 6 C -0.193 4.193 7 C 0.279 3.721 8 O -0.357 6.357 9 N -0.299 5.299 10 C 0.084 3.916 11 N -0.195 5.195 12 C -0.084 4.084 13 C -0.168 4.168 14 C -0.176 4.176 15 C -0.005 4.005 16 O -0.233 6.233 17 C 0.011 3.989 18 C -0.042 4.042 19 C -0.575 4.575 20 H 0.058 0.942 21 C -0.189 4.189 22 N -0.586 5.586 23 Si 0.774 3.226 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.163 1.163 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.272 0.728 36 H 0.197 0.803 37 H 0.189 0.811 38 H 0.172 0.828 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.589 6.097 -0.161 25.334 hybrid contribution 1.736 0.359 0.044 1.774 sum -22.852 6.456 -0.118 23.747 Atomic orbital electron populations 1.21677 0.78808 1.03310 1.02133 1.47901 1.07660 1.06715 1.73558 1.22216 0.98241 0.83578 1.03701 1.20539 0.90287 0.83580 0.76619 1.90854 1.70608 1.32545 1.49377 1.21697 0.93056 0.94163 1.10425 1.20987 0.81459 0.92542 0.77101 1.90928 1.54557 1.46750 1.43469 1.43517 1.08506 1.05342 1.72528 1.18002 0.85624 0.87028 1.00992 1.67704 1.36546 1.00582 1.14647 1.22978 0.95798 0.92053 0.97575 1.22242 0.92662 1.01480 1.00425 1.21893 1.02419 0.90981 1.02339 1.19615 0.88780 0.89249 1.02870 1.85959 1.17371 1.31395 1.88602 1.22766 0.75651 0.99503 1.00985 1.19430 0.92413 0.94055 0.98272 1.21137 0.90429 0.94125 1.51765 0.94206 1.25947 0.94538 1.04669 0.93719 1.70042 1.01512 1.35300 1.51728 0.85643 0.79306 0.78295 0.79365 1.19033 1.21221 1.16316 0.92551 0.88144 0.93110 0.88234 0.90247 0.90421 0.81925 0.81914 0.72806 0.80291 0.81055 0.82797 0.92153 0.92142 0.94853 0.94984 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.48 127.77 1.34 2.47 16 2 N -0.62 -9.11 3.27 -871.91 -2.85 -11.96 16 3 C 0.06 0.30 10.60 127.77 1.35 1.65 16 4 C 0.50 11.38 7.67 87.66 0.67 12.05 16 5 O -0.56 -19.73 13.76 20.42 0.28 -19.45 16 6 C -0.15 -2.33 4.50 29.10 0.13 -2.20 16 7 C 0.49 13.64 7.79 87.66 0.68 14.32 16 8 O -0.49 -19.09 12.43 20.42 0.25 -18.83 16 9 N -0.65 -17.03 5.39 -308.03 -1.66 -18.69 16 10 C 0.32 10.08 7.45 132.98 0.99 11.07 16 11 N -0.48 -16.30 7.88 -192.58 -1.52 -17.82 16 12 C 0.07 1.93 11.17 84.64 0.95 2.88 16 13 C -0.15 -3.38 10.10 22.36 0.23 -3.15 16 14 C -0.15 -4.05 9.14 22.53 0.21 -3.85 16 15 C 0.05 1.41 6.72 22.70 0.15 1.56 16 16 O -0.32 -10.36 9.39 -93.25 -0.88 -11.24 16 17 C 0.09 3.06 4.70 71.98 0.34 3.40 16 18 C 0.00 -0.18 4.41 29.85 0.13 -0.05 16 19 C -0.54 -28.69 9.66 25.60 0.25 -28.44 16 20 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 21 C 0.01 0.50 5.47 84.65 0.46 0.96 16 22 N -0.95 -56.42 13.96 21.45 0.30 -56.13 16 23 Si 0.95 40.80 27.47 68.60 1.88 42.68 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 29 H 0.05 0.97 7.42 -2.39 -0.02 0.96 16 30 H 0.10 0.10 5.77 -2.39 -0.01 0.09 16 31 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.16 1.23 7.79 -2.39 -0.02 1.21 16 34 H 0.16 1.22 7.79 -2.39 -0.02 1.20 16 35 H 0.43 8.71 8.04 -92.71 -0.75 7.96 16 36 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.15 3.85 6.44 -2.91 -0.02 3.83 16 39 H 0.06 2.12 7.70 -2.39 -0.02 2.10 16 40 H 0.06 2.12 7.70 -2.39 -0.02 2.10 16 41 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 42 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -86.47 362.47 3.93 -82.54 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.24 Total: 16.22 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 7.88 Total: 12.67 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -5.73 Total: -104.60 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.34 Total: -49.51 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.88 Total: 42.68 kcal Total: -86.47 3.93 -82.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345967192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.725 kcal (2) G-P(sol) polarization free energy of solvation -86.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds