Wall clock time and date at job start Tue Mar 31 2020 12:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46821 * 2 1 4 4 C 1.46902 * 110.99900 * 287.46733 * 3 2 1 5 5 C 1.50704 * 109.46767 * 165.96295 * 4 3 2 6 6 H 1.07992 * 120.00235 * 354.72041 * 5 4 3 7 7 C 1.37874 * 119.99786 * 174.72460 * 5 4 3 8 8 N 1.31516 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00141 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47099 * 59.99564 * 9 7 5 11 11 H 1.48498 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47063 * 300.00036 * 9 7 5 13 13 C 1.46906 * 110.99877 * 163.51684 * 3 2 1 14 14 C 1.50700 * 109.47022 * 293.95350 * 13 3 2 15 15 O 1.21277 * 120.00209 * 359.97438 * 14 13 3 16 16 N 1.34772 * 120.00081 * 180.27435 * 14 13 3 17 17 C 1.39384 * 120.00452 * 174.42059 * 16 14 13 18 18 C 1.39418 * 119.62862 * 185.95144 * 17 16 14 19 19 C 1.38317 * 119.30242 * 179.76948 * 18 17 16 20 20 C 1.38801 * 118.56561 * 0.50306 * 19 18 17 21 21 C 1.39188 * 119.20570 * 359.74542 * 20 19 18 22 22 C 1.48052 * 119.68039 * 179.97438 * 21 20 19 23 23 O 1.21435 * 120.00526 * 0.02562 * 22 21 20 24 24 O 1.34690 * 119.99633 * 180.02562 * 22 21 20 25 25 C 1.45199 * 117.00037 * 179.97438 * 24 22 21 26 26 N 1.31986 * 119.62245 * 6.23151 * 17 16 14 27 27 H 1.09001 * 109.47628 * 308.61799 * 1 2 3 28 28 H 1.09008 * 109.47078 * 68.61928 * 1 2 3 29 29 H 1.08998 * 109.47265 * 188.61178 * 1 2 3 30 30 H 1.08999 * 109.47380 * 239.99683 * 2 1 3 31 31 H 1.08999 * 109.47036 * 119.99669 * 2 1 3 32 32 H 1.08996 * 109.46960 * 285.96291 * 4 3 2 33 33 H 1.09004 * 109.46816 * 45.96580 * 4 3 2 34 34 H 0.97000 * 120.00403 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46865 * 173.95001 * 13 3 2 36 36 H 1.09004 * 109.47036 * 53.95265 * 13 3 2 37 37 H 0.97005 * 120.00076 * 354.42328 * 16 14 13 38 38 H 1.07998 * 120.35445 * 0.02799 * 18 17 16 39 39 H 1.07989 * 120.71775 * 180.24485 * 19 18 17 40 40 H 1.07995 * 120.39455 * 179.76538 * 20 19 18 41 41 H 1.09004 * 109.46620 * 59.99319 * 25 24 22 42 42 H 1.08994 * 109.46920 * 179.97438 * 25 24 22 43 43 H 1.08999 * 109.46794 * 299.99802 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8069 2.0185 -1.3082 5 6 1.9929 3.5086 -1.1809 6 1 2.1595 3.9510 -0.2099 7 6 1.9503 4.3071 -2.3040 8 7 1.7479 3.7684 -3.4866 9 14 2.1802 6.1542 -2.1462 10 1 3.5120 6.4384 -1.5542 11 1 2.0923 6.7806 -3.4897 12 1 1.1195 6.7118 -1.2691 13 6 3.4350 1.4430 0.3891 14 6 3.5790 1.0119 1.8259 15 8 2.5991 0.6886 2.4632 16 7 4.7960 0.9913 2.4046 17 6 4.9169 0.7055 3.7634 18 6 6.1626 0.8079 4.3811 19 6 6.2740 0.5274 5.7309 20 6 5.1356 0.1409 6.4247 21 6 3.9236 0.0534 5.7459 22 6 2.7028 -0.3583 6.4755 23 8 2.7618 -0.6173 7.6604 24 8 1.5268 -0.4455 5.8248 25 6 0.3717 -0.8558 6.6031 26 7 3.8519 0.3354 4.4496 27 1 -0.3634 0.6414 0.8029 28 1 -0.3634 0.3747 -0.9570 29 1 -0.3634 -1.0161 0.1539 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.5263 1.6225 -2.0249 33 1 0.7951 1.8069 -1.6542 34 1 1.7183 4.3301 -4.2769 35 1 3.8008 2.4637 0.2776 36 1 4.0151 0.7772 -0.2499 37 1 5.5878 1.1755 1.8754 38 1 7.0307 1.1073 3.8126 39 1 7.2269 0.6032 6.2333 40 1 5.1896 -0.0888 7.4785 41 1 0.2070 -0.1437 7.4118 42 1 -0.5079 -0.8848 5.9601 43 1 0.5490 -1.8464 7.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346435482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:53 Heat of formation + Delta-G solvation = -51.438499 kcal Electronic energy + Delta-G solvation = -26938.948549 eV Core-core repulsion = 22985.801893 eV Total energy + Delta-G solvation = -3953.146656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.14000 -40.18077 -38.95882 -36.62835 -36.35164 -34.72167 -32.87951 -32.61506 -31.00891 -30.04130 -28.04518 -27.78003 -25.56145 -25.00702 -23.36950 -22.49822 -21.51851 -20.66709 -19.69544 -18.62861 -17.55902 -16.82021 -16.56169 -16.49103 -16.36801 -16.29306 -15.52091 -15.26944 -14.67590 -14.53956 -14.16138 -13.95454 -13.89955 -13.47634 -13.37538 -13.04711 -12.84999 -12.50379 -12.26552 -12.14011 -11.74595 -11.43600 -11.19546 -11.02432 -10.96343 -10.85031 -10.84170 -10.78702 -10.54928 -10.24711 -10.16342 -10.03907 -9.75626 -9.26880 -8.90496 -8.47872 -8.43328 -7.25267 -6.05103 -4.07151 0.29664 1.02708 2.22051 2.48076 2.81290 3.00423 3.30937 3.36033 3.39444 3.71840 3.99071 4.40302 4.50031 4.65076 4.71240 4.84194 4.99985 5.02657 5.09966 5.10542 5.21100 5.29823 5.44941 5.60741 5.77852 5.78390 5.85099 5.96164 6.07504 6.12837 6.19215 6.26035 6.46593 6.55299 6.73240 6.94302 7.02337 7.24876 7.30934 7.53134 7.79954 7.85980 8.08022 8.15115 8.47386 8.55158 9.01493 9.57643 11.05112 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003223 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.364877 B = 8684.338676 C = 9564.399445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 N -0.519 5.519 4 C 0.193 3.807 5 C -0.511 4.511 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.050 3.950 14 C 0.496 3.504 15 O -0.442 6.442 16 N -0.668 5.668 17 C 0.370 3.630 18 C -0.180 4.180 19 C -0.055 4.055 20 C -0.147 4.147 21 C 0.122 3.878 22 C 0.526 3.474 23 O -0.506 6.506 24 O -0.320 6.320 25 C 0.034 3.966 26 N -0.430 5.430 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.016 0.984 31 H 0.070 0.930 32 H -0.004 1.004 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.418 0.582 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -9.153 16.623 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 N -0.245 5.245 4 C 0.068 3.932 5 C -0.549 4.549 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.081 4.081 14 C 0.282 3.718 15 O -0.307 6.307 16 N -0.316 5.316 17 C 0.135 3.865 18 C -0.204 4.204 19 C -0.081 4.081 20 C -0.169 4.169 21 C -0.015 4.015 22 C 0.369 3.631 23 O -0.394 6.394 24 O -0.234 6.234 25 C -0.060 4.060 26 N -0.148 5.148 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.088 0.912 32 H 0.014 0.986 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.069 0.931 37 H 0.255 0.745 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.458 -9.209 17.046 20.760 hybrid contribution 1.719 0.767 -0.448 1.935 sum 9.177 -8.442 16.598 20.760 Atomic orbital electron populations 1.21647 0.95412 1.00024 1.02318 1.22081 0.96439 0.90121 0.99180 1.61858 1.13183 1.15553 1.33857 1.19809 0.96959 0.94065 0.82373 1.21150 1.48868 0.91508 0.93395 0.91911 1.24981 0.95424 0.98842 0.95206 1.69946 1.49960 1.35653 0.98184 0.86582 0.78720 0.85197 0.77030 1.20318 1.21378 1.20141 1.21850 0.93545 1.03410 0.89334 1.21580 0.81950 0.77689 0.90552 1.90802 1.36106 1.40390 1.63450 1.44010 1.11643 1.69838 1.06134 1.18521 0.89049 0.92929 0.85963 1.21834 0.97359 1.04914 0.96245 1.21340 0.98753 0.94826 0.93143 1.21938 0.91626 1.01226 1.02089 1.19863 0.91212 1.00541 0.89930 1.20837 0.83750 0.73785 0.84688 1.90827 1.86397 1.46495 1.15677 1.86822 1.16688 1.78032 1.41833 1.23357 0.85800 1.00143 0.96713 1.67664 1.29953 1.10795 1.06367 0.91865 0.92902 0.93788 0.96565 0.91158 0.98609 0.94579 0.92837 0.86628 0.93105 0.74532 0.83716 0.83399 0.83380 0.91872 0.87649 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.82 37.16 0.36 -2.18 16 2 C 0.05 0.98 5.24 -3.83 -0.02 0.96 16 3 N -0.52 -11.30 4.16 -237.51 -0.99 -12.29 16 4 C 0.19 4.88 4.57 -4.97 -0.02 4.86 16 5 C -0.51 -13.93 8.33 -34.44 -0.29 -14.22 16 6 H 0.06 1.71 7.63 -52.49 -0.40 1.31 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.05 0.91 5.31 -4.97 -0.03 0.88 16 14 C 0.50 8.43 7.34 -10.99 -0.08 8.35 16 15 O -0.44 -9.13 12.76 5.56 0.07 -9.06 16 16 N -0.67 -8.39 5.39 -11.42 -0.06 -8.45 16 17 C 0.37 4.79 7.42 -154.89 -1.15 3.64 16 18 C -0.18 -1.56 9.94 -39.11 -0.39 -1.95 16 19 C -0.05 -0.43 10.16 -39.34 -0.40 -0.83 16 20 C -0.15 -1.51 9.63 -39.02 -0.38 -1.88 16 21 C 0.12 1.71 6.74 -83.04 -0.56 1.15 16 22 C 0.53 7.78 7.95 34.76 0.28 8.06 16 23 O -0.51 -7.56 16.10 -19.21 -0.31 -7.87 16 24 O -0.32 -4.89 10.38 -40.47 -0.42 -5.31 16 25 C 0.03 0.36 10.56 101.05 1.07 1.43 16 26 N -0.43 -6.86 7.65 -8.94 -0.07 -6.93 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.05 1.02 6.90 -51.92 -0.36 0.66 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 31 H 0.07 1.37 5.81 -51.93 -0.30 1.07 16 32 H 0.00 -0.10 8.08 -51.93 -0.42 -0.52 16 33 H 0.04 0.98 6.51 -51.93 -0.34 0.65 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.12 2.13 7.06 -51.93 -0.37 1.77 16 36 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 37 H 0.42 3.48 8.70 -40.82 -0.36 3.13 16 38 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.15 1.29 7.63 -52.49 -0.40 0.89 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -35.49 368.67 -8.08 -43.57 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.87 Total: 0.16 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.70 Total: 9.75 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.38 Total: -52.94 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.66 Total: -22.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.49 -8.08 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346435482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.869 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds