Wall clock time and date at job start Tue Mar 31 2020 12:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46821 * 2 1 4 4 C 1.46902 * 110.99900 * 287.46733 * 3 2 1 5 5 C 1.50704 * 109.46767 * 165.96295 * 4 3 2 6 6 H 1.07992 * 120.00235 * 354.72041 * 5 4 3 7 7 C 1.37874 * 119.99786 * 174.72460 * 5 4 3 8 8 N 1.31516 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00141 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47099 * 59.99564 * 9 7 5 11 11 H 1.48498 * 109.47383 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47063 * 300.00036 * 9 7 5 13 13 C 1.46906 * 110.99877 * 163.51684 * 3 2 1 14 14 C 1.50700 * 109.47022 * 293.95350 * 13 3 2 15 15 O 1.21277 * 120.00209 * 359.97438 * 14 13 3 16 16 N 1.34772 * 120.00081 * 180.27435 * 14 13 3 17 17 C 1.39384 * 120.00452 * 174.42059 * 16 14 13 18 18 C 1.39418 * 119.62862 * 185.95144 * 17 16 14 19 19 C 1.38317 * 119.30242 * 179.76948 * 18 17 16 20 20 C 1.38801 * 118.56561 * 0.50306 * 19 18 17 21 21 C 1.39188 * 119.20570 * 359.74542 * 20 19 18 22 22 C 1.48052 * 119.68039 * 179.97438 * 21 20 19 23 23 O 1.21435 * 120.00526 * 0.02562 * 22 21 20 24 24 O 1.34690 * 119.99633 * 180.02562 * 22 21 20 25 25 C 1.45199 * 117.00037 * 179.97438 * 24 22 21 26 26 N 1.31986 * 119.62245 * 6.23151 * 17 16 14 27 27 H 1.09001 * 109.47628 * 308.61799 * 1 2 3 28 28 H 1.09008 * 109.47078 * 68.61928 * 1 2 3 29 29 H 1.08998 * 109.47265 * 188.61178 * 1 2 3 30 30 H 1.08999 * 109.47380 * 239.99683 * 2 1 3 31 31 H 1.08999 * 109.47036 * 119.99669 * 2 1 3 32 32 H 1.08996 * 109.46960 * 285.96291 * 4 3 2 33 33 H 1.09004 * 109.46816 * 45.96580 * 4 3 2 34 34 H 0.97000 * 120.00403 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46865 * 173.95001 * 13 3 2 36 36 H 1.09004 * 109.47036 * 53.95265 * 13 3 2 37 37 H 0.97005 * 120.00076 * 354.42328 * 16 14 13 38 38 H 1.07998 * 120.35445 * 0.02799 * 18 17 16 39 39 H 1.07989 * 120.71775 * 180.24485 * 19 18 17 40 40 H 1.07995 * 120.39455 * 179.76538 * 20 19 18 41 41 H 1.09004 * 109.46620 * 59.99319 * 25 24 22 42 42 H 1.08994 * 109.46920 * 179.97438 * 25 24 22 43 43 H 1.08999 * 109.46794 * 299.99802 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8069 2.0185 -1.3082 5 6 1.9929 3.5086 -1.1809 6 1 2.1595 3.9510 -0.2099 7 6 1.9503 4.3071 -2.3040 8 7 1.7479 3.7684 -3.4866 9 14 2.1802 6.1542 -2.1462 10 1 3.5120 6.4384 -1.5542 11 1 2.0923 6.7806 -3.4897 12 1 1.1195 6.7118 -1.2691 13 6 3.4350 1.4430 0.3891 14 6 3.5790 1.0119 1.8259 15 8 2.5991 0.6886 2.4632 16 7 4.7960 0.9913 2.4046 17 6 4.9169 0.7055 3.7634 18 6 6.1626 0.8079 4.3811 19 6 6.2740 0.5274 5.7309 20 6 5.1356 0.1409 6.4247 21 6 3.9236 0.0534 5.7459 22 6 2.7028 -0.3583 6.4755 23 8 2.7618 -0.6173 7.6604 24 8 1.5268 -0.4455 5.8248 25 6 0.3717 -0.8558 6.6031 26 7 3.8519 0.3354 4.4496 27 1 -0.3634 0.6414 0.8029 28 1 -0.3634 0.3747 -0.9570 29 1 -0.3634 -1.0161 0.1539 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.5263 1.6225 -2.0249 33 1 0.7951 1.8069 -1.6542 34 1 1.7183 4.3301 -4.2769 35 1 3.8008 2.4637 0.2776 36 1 4.0151 0.7772 -0.2499 37 1 5.5878 1.1755 1.8754 38 1 7.0307 1.1073 3.8126 39 1 7.2269 0.6032 6.2333 40 1 5.1896 -0.0888 7.4785 41 1 0.2070 -0.1437 7.4118 42 1 -0.5079 -0.8848 5.9601 43 1 0.5490 -1.8464 7.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346435482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:51 Heat of formation + Delta-G solvation = -76.257383 kcal Electronic energy + Delta-G solvation = -26940.024777 eV Core-core repulsion = 22985.801893 eV Total energy + Delta-G solvation = -3954.222883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10675 -41.29003 -40.13571 -38.04533 -37.59243 -35.89059 -34.69267 -33.67889 -32.25433 -31.38589 -29.64891 -28.85149 -27.18062 -25.93860 -24.60451 -24.13511 -22.51621 -22.02439 -21.16328 -19.62891 -18.66073 -18.49750 -18.04830 -17.53065 -17.50494 -17.01555 -16.80690 -16.51609 -16.24960 -16.08458 -15.50885 -15.39824 -14.86813 -14.77477 -14.39120 -14.23422 -14.13167 -14.09759 -13.39723 -13.25298 -13.20660 -13.02492 -12.90611 -12.66290 -12.56135 -12.29261 -12.09848 -12.05255 -11.92106 -11.84663 -11.60057 -11.34619 -11.02534 -10.94904 -10.57234 -10.09598 -9.41918 -8.97347 -8.16634 -6.26886 -0.56868 0.22177 1.23574 1.43607 1.46825 1.54522 1.58080 1.72737 1.83051 2.43075 2.81869 3.01751 3.15774 3.35673 3.75216 3.78761 3.94268 4.08141 4.19802 4.23710 4.27284 4.27854 4.32502 4.40945 4.56467 4.57109 4.63825 4.72712 4.90059 4.92838 5.04311 5.07092 5.19787 5.21686 5.27308 5.30540 5.37245 5.67499 5.69588 6.03187 6.10226 6.33261 6.52331 6.62247 6.88777 6.93776 7.34721 7.43095 8.93373 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003223 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.364877 B = 8684.338676 C = 9564.399445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.054 3.946 3 N -0.536 5.536 4 C 0.210 3.790 5 C -0.523 4.523 6 H 0.059 0.941 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.276 1.276 13 C 0.050 3.950 14 C 0.504 3.496 15 O -0.487 6.487 16 N -0.651 5.651 17 C 0.338 3.662 18 C -0.152 4.152 19 C -0.042 4.042 20 C -0.132 4.132 21 C 0.083 3.917 22 C 0.521 3.479 23 O -0.519 6.519 24 O -0.349 6.349 25 C 0.027 3.973 26 N -0.478 5.478 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.074 0.926 32 H -0.024 1.024 33 H 0.009 0.991 34 H 0.265 0.735 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.438 0.562 38 H 0.190 0.810 39 H 0.199 0.801 40 H 0.163 0.837 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.483 -8.573 17.933 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 N -0.261 5.261 4 C 0.085 3.915 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.190 4.190 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.202 1.202 13 C -0.081 4.081 14 C 0.290 3.710 15 O -0.356 6.356 16 N -0.302 5.302 17 C 0.104 3.896 18 C -0.175 4.175 19 C -0.067 4.067 20 C -0.154 4.154 21 C -0.053 4.053 22 C 0.365 3.635 23 O -0.409 6.409 24 O -0.263 6.263 25 C -0.066 4.066 26 N -0.196 5.196 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.092 0.908 32 H -0.006 1.006 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.279 0.721 38 H 0.207 0.793 39 H 0.216 0.784 40 H 0.180 0.820 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.537 -8.642 18.393 22.892 hybrid contribution 0.850 0.526 -0.778 1.266 sum 11.387 -8.116 17.615 22.491 Atomic orbital electron populations 1.21600 0.94976 1.01420 1.00824 1.22083 0.96865 0.89073 0.99403 1.61734 1.16010 1.16811 1.31537 1.19424 0.94721 0.93691 0.83697 1.21392 1.48865 0.92582 0.93330 0.92288 1.25817 0.94899 1.03595 0.94737 1.70067 1.50770 1.37433 0.98935 0.85517 0.79190 0.79302 0.77087 1.18622 1.20919 1.20196 1.21840 0.91611 1.03724 0.90921 1.21203 0.82864 0.77187 0.89752 1.90794 1.37926 1.42716 1.64151 1.43579 1.10823 1.69146 1.06651 1.18881 0.90297 0.94735 0.85687 1.22312 0.96640 1.01754 0.96750 1.21938 0.99624 0.92537 0.92649 1.22277 0.91093 0.99254 1.02776 1.19973 0.92059 1.03331 0.89923 1.21214 0.84085 0.73413 0.84744 1.90787 1.86645 1.47479 1.15972 1.86802 1.17880 1.78276 1.43370 1.23605 0.85160 1.00774 0.97067 1.67402 1.32348 1.12224 1.07607 0.93467 0.94271 0.90808 0.96095 0.90781 1.00612 0.97318 0.92666 0.87202 0.90989 0.72147 0.79273 0.78403 0.81958 0.91275 0.86142 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.82 71.98 0.71 -4.29 16 2 C 0.05 2.14 5.24 86.30 0.45 2.59 16 3 N -0.54 -23.92 4.16 -905.35 -3.76 -27.68 16 4 C 0.21 11.03 4.57 85.56 0.39 11.42 16 5 C -0.52 -29.04 8.33 25.60 0.21 -28.82 16 6 H 0.06 3.25 7.63 -2.91 -0.02 3.23 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -54.71 13.29 21.45 0.28 -54.43 16 9 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.05 1.82 5.31 85.56 0.45 2.28 16 14 C 0.50 17.10 7.34 87.66 0.64 17.74 16 15 O -0.49 -20.66 12.76 -3.02 -0.04 -20.69 16 16 N -0.65 -15.38 5.39 -308.42 -1.66 -17.04 16 17 C 0.34 8.16 7.42 133.12 0.99 9.15 16 18 C -0.15 -1.96 9.94 22.57 0.22 -1.73 16 19 C -0.04 -0.45 10.16 22.42 0.23 -0.22 16 20 C -0.13 -2.39 9.63 22.63 0.22 -2.17 16 21 C 0.08 2.31 6.74 41.82 0.28 2.59 16 22 C 0.52 15.89 7.95 70.43 0.56 16.45 16 23 O -0.52 -15.74 16.10 20.05 0.32 -15.42 16 24 O -0.35 -11.19 10.38 -56.00 -0.58 -11.77 16 25 C 0.03 0.60 10.56 113.37 1.20 1.79 16 26 N -0.48 -15.24 7.65 -182.20 -1.39 -16.64 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.57 6.90 -2.38 -0.02 1.55 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.02 0.81 8.05 -2.39 -0.02 0.79 16 31 H 0.07 2.93 5.81 -2.39 -0.01 2.92 16 32 H -0.02 -1.32 8.08 -2.39 -0.02 -1.34 16 33 H 0.01 0.50 6.51 -2.39 -0.02 0.49 16 34 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.11 4.06 7.06 -2.39 -0.02 4.05 16 36 H 0.07 2.28 8.12 -2.38 -0.02 2.26 16 37 H 0.44 6.16 8.70 -92.70 -0.81 5.35 16 38 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.20 0.21 8.06 -2.92 -0.02 0.18 16 40 H 0.16 2.41 7.63 -2.91 -0.02 2.39 16 41 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.12 2.18 8.14 -2.39 -0.02 2.17 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -81.24 368.67 2.45 -78.79 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.23 Total: 11.89 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: 7.02 Total: 27.68 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -6.53 Total: -115.78 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.30 Total: -47.89 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -81.24 2.45 -78.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346435482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.532 kcal (2) G-P(sol) polarization free energy of solvation -81.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds