Wall clock time and date at job start Tue Mar 31 2020 13:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35952 * 116.99878 * 2 1 4 4 C 1.38658 * 120.06361 * 359.97438 * 3 2 1 5 5 C 1.38182 * 119.96832 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.09268 * 359.74353 * 5 4 3 7 7 C 1.38251 * 120.12558 * 0.51122 * 6 5 4 8 8 C 1.50707 * 119.98408 * 179.76776 * 7 6 5 9 9 C 1.52994 * 109.47009 * 264.72455 * 8 7 6 10 10 C 1.50698 * 109.47153 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00330 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 C 1.38334 * 120.03155 * 359.48775 * 7 6 5 26 26 F 1.35099 * 120.04723 * 180.23160 * 25 7 6 27 27 H 1.08997 * 109.47388 * 300.00260 * 1 2 3 28 28 H 1.09003 * 109.46993 * 60.00279 * 1 2 3 29 29 H 1.09001 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.01790 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.95555 * 180.02562 * 5 4 3 32 32 H 1.08002 * 119.93640 * 180.28249 * 6 5 4 33 33 H 1.09003 * 109.47080 * 144.72292 * 8 7 6 34 34 H 1.09002 * 109.46869 * 24.72400 * 8 7 6 35 35 H 1.09005 * 109.47336 * 59.99445 * 9 8 7 36 36 H 1.09009 * 109.47164 * 300.00067 * 9 8 7 37 37 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 39 39 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 40 40 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 41 41 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 42 42 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 43 43 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 44 44 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6052 -0.0011 6 6 3.3024 3.6776 0.0043 7 6 4.0579 2.5198 -0.0005 8 6 5.5627 2.6024 0.0001 9 6 6.0794 2.5039 -1.4366 10 6 7.5841 2.5859 -1.4360 11 8 8.1843 2.7112 -0.3896 12 7 8.2631 2.5210 -2.5985 13 6 9.7259 2.6001 -2.5980 14 6 10.2360 2.6227 -4.0401 15 6 9.9824 1.3703 -4.8390 16 1 9.1127 1.3030 -5.4760 17 6 10.8634 0.3127 -4.7613 18 7 11.9707 0.4294 -4.0615 19 14 10.4841 -1.2862 -5.6497 20 1 10.3636 -1.0262 -7.1068 21 1 11.5806 -2.2584 -5.4090 22 1 9.2066 -1.8452 -5.1391 23 6 10.1881 3.9580 -4.7856 24 6 11.5306 3.3888 -4.3197 25 6 3.4333 1.2855 0.0001 26 9 4.1713 0.1539 0.0002 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2137 2.3201 -0.0014 31 1 1.3342 4.5115 -0.0011 32 1 3.7917 4.6404 0.0085 33 1 5.9714 1.7821 0.5902 34 1 5.8743 3.5525 0.4340 35 1 5.6706 3.3242 -2.0268 36 1 5.7678 1.5537 -1.8705 37 1 7.7831 2.4211 -3.4355 38 1 10.1365 1.7328 -2.0808 39 1 10.0403 3.5102 -2.0870 40 1 12.6247 -0.2870 -4.0654 41 1 9.9731 3.9307 -5.8538 42 1 9.7936 4.8205 -4.2483 43 1 12.0186 3.8771 -3.4762 44 1 12.1989 2.9868 -5.0811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355408420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:58 Heat of formation + Delta-G solvation = -82.956035 kcal Electronic energy + Delta-G solvation = -26221.400326 eV Core-core repulsion = 22246.967006 eV Total energy + Delta-G solvation = -3974.433320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.84007 -40.30024 -39.16562 -37.95101 -36.67834 -33.79643 -33.25271 -31.95185 -30.55945 -29.81125 -27.68994 -26.56082 -25.38183 -23.96417 -22.80981 -21.36155 -21.09934 -19.68891 -19.18726 -18.32334 -17.30460 -17.15397 -16.72712 -16.34930 -16.01918 -15.25742 -15.25082 -14.99316 -14.86954 -14.73932 -14.61476 -14.07136 -13.82023 -13.22517 -13.16585 -12.82145 -12.80632 -12.55412 -12.29381 -12.09562 -11.86030 -11.68784 -11.55363 -11.33565 -11.24115 -10.97285 -10.95287 -10.90710 -10.53493 -10.23251 -9.60664 -9.32454 -9.03305 -8.93248 -8.48110 -8.46755 -8.25100 -8.07006 -6.06499 -4.16601 0.84744 0.99603 2.81277 3.22818 3.27346 3.28430 3.34412 3.35946 3.88630 4.03745 4.36236 4.41076 4.52913 4.70769 4.76089 4.88399 4.94003 4.97431 5.09453 5.11969 5.21251 5.27504 5.34977 5.50969 5.64925 5.75933 5.77046 5.89211 6.03935 6.05019 6.15661 6.23418 6.34735 6.39710 6.48534 6.57606 6.70896 6.89392 6.98407 7.12704 7.30125 7.41028 7.54099 7.81832 8.31266 8.34784 8.84072 8.90090 9.50758 11.00655 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002743 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.086621 B =10204.357328 C =11301.809374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.095 3.905 4 C -0.190 4.190 5 C -0.089 4.089 6 C -0.125 4.125 7 C -0.073 4.073 8 C -0.065 4.065 9 C -0.135 4.135 10 C 0.504 3.496 11 O -0.559 6.559 12 N -0.704 5.704 13 C 0.163 3.837 14 C 0.025 3.975 15 C -0.502 4.502 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.211 4.211 24 C -0.143 4.143 25 C 0.072 3.928 26 F -0.127 7.127 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.065 5.342 7.119 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.048 3.952 4 C -0.209 4.209 5 C -0.107 4.107 6 C -0.143 4.143 7 C -0.074 4.074 8 C -0.102 4.102 9 C -0.175 4.175 10 C 0.290 3.710 11 O -0.439 6.439 12 N -0.352 5.352 13 C 0.039 3.961 14 C 0.024 3.976 15 C -0.539 4.539 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.248 4.248 24 C -0.181 4.181 25 C 0.052 3.948 26 F -0.105 7.105 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.346 5.045 7.964 24.253 hybrid contribution -0.483 -1.096 -0.977 1.546 sum -22.829 3.949 6.987 24.199 Atomic orbital electron populations 1.23106 0.78012 1.04265 1.01397 1.86156 1.21637 1.25846 1.88703 1.19010 0.90772 0.85653 0.99717 1.21103 1.00139 0.91577 1.08050 1.20985 0.94546 0.97134 0.98030 1.20934 0.93439 0.97796 1.02160 1.19927 0.97169 0.90872 0.99431 1.20299 0.87913 1.05183 0.96819 1.21611 0.93400 1.04538 0.97980 1.20444 0.89415 0.76994 0.84182 1.90654 1.70787 1.50880 1.31566 1.46002 1.08867 1.71972 1.08368 1.20992 0.77532 0.99738 0.97788 1.19035 0.97609 0.90160 0.90811 1.20317 1.09780 0.97292 1.26552 0.92246 1.24986 0.95050 0.98342 0.94679 1.69976 1.08230 1.33309 1.39549 0.86690 0.78142 0.83415 0.79948 1.20281 1.21251 1.20078 1.23016 1.03929 0.98134 0.99740 1.22467 0.90686 1.03166 1.01768 1.16863 0.85802 0.82930 1.09174 1.91522 1.76315 1.48635 1.94059 0.92505 0.92441 0.87978 0.84704 0.85056 0.84623 0.89524 0.89299 0.88966 0.88944 0.76489 0.91505 0.94212 0.92796 0.90416 0.91751 0.91837 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.45 10.36 -19.59 -0.20 -3.65 16 3 C 0.09 1.07 6.69 -39.18 -0.26 0.81 16 4 C -0.19 -1.60 9.04 -39.45 -0.36 -1.96 16 5 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 6 C -0.13 -1.14 9.67 -39.57 -0.38 -1.52 16 7 C -0.07 -0.84 5.14 -104.58 -0.54 -1.38 16 8 C -0.06 -0.84 4.41 -27.88 -0.12 -0.96 16 9 C -0.14 -1.84 5.68 -27.89 -0.16 -2.00 16 10 C 0.50 9.25 7.83 -10.98 -0.09 9.17 16 11 O -0.56 -12.21 15.98 5.56 0.09 -12.12 16 12 N -0.70 -13.62 5.48 -60.30 -0.33 -13.95 16 13 C 0.16 3.71 5.50 -4.05 -0.02 3.68 16 14 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 15 C -0.50 -12.98 8.59 -34.44 -0.30 -13.27 16 16 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 17 C 0.07 1.97 5.43 -17.82 -0.10 1.87 16 18 N -0.87 -24.46 12.65 55.43 0.70 -23.76 16 19 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 24 C -0.14 -3.29 9.14 -26.69 -0.24 -3.54 16 25 C 0.07 0.94 7.25 -39.30 -0.28 0.65 16 26 F -0.13 -1.94 16.41 2.25 0.04 -1.90 16 27 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.14 0.77 6.30 -52.49 -0.33 0.44 16 31 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.09 1.28 7.75 -51.93 -0.40 0.88 16 34 H 0.09 1.10 8.01 -51.93 -0.42 0.69 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.40 7.09 8.33 -40.82 -0.34 6.75 16 38 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 39 H 0.04 0.90 8.09 -51.92 -0.42 0.48 16 40 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -31.63 378.59 -8.25 -39.88 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.48 Total: 6.73 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.75 Total: -12.69 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.37 Total: -37.70 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.11 Total: -15.77 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.63 -8.25 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355408420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.077 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds