Wall clock time and date at job start Tue Mar 31 2020 13:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35952 * 116.99878 * 2 1 4 4 C 1.38658 * 120.06361 * 359.97438 * 3 2 1 5 5 C 1.38182 * 119.96832 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.09268 * 359.74353 * 5 4 3 7 7 C 1.38251 * 120.12558 * 0.51122 * 6 5 4 8 8 C 1.50707 * 119.98408 * 179.76776 * 7 6 5 9 9 C 1.52994 * 109.47009 * 264.72455 * 8 7 6 10 10 C 1.50698 * 109.47153 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00330 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00135 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00258 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47269 * 184.79147 * 13 12 10 15 15 C 1.50694 * 115.55114 * 294.81128 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20873 * 15 14 13 17 17 C 1.37875 * 120.00314 * 274.92789 * 15 14 13 18 18 N 1.31509 * 119.99913 * 355.42420 * 17 15 14 19 19 Si 1.86807 * 120.00040 * 175.41703 * 17 15 14 20 20 H 1.48494 * 109.47052 * 60.00642 * 19 17 15 21 21 H 1.48500 * 109.47055 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47106 * 300.00083 * 19 17 15 23 23 C 1.53003 * 117.49834 * 80.48431 * 14 13 12 24 24 C 1.53006 * 117.49908 * 149.14426 * 14 13 12 25 25 C 1.38334 * 120.03155 * 359.48775 * 7 6 5 26 26 F 1.35099 * 120.04723 * 180.23160 * 25 7 6 27 27 H 1.08997 * 109.47388 * 300.00260 * 1 2 3 28 28 H 1.09003 * 109.46993 * 60.00279 * 1 2 3 29 29 H 1.09001 * 109.47480 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.01790 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.95555 * 180.02562 * 5 4 3 32 32 H 1.08002 * 119.93640 * 180.28249 * 6 5 4 33 33 H 1.09003 * 109.47080 * 144.72292 * 8 7 6 34 34 H 1.09002 * 109.46869 * 24.72400 * 8 7 6 35 35 H 1.09005 * 109.47336 * 59.99445 * 9 8 7 36 36 H 1.09009 * 109.47164 * 300.00067 * 9 8 7 37 37 H 0.96999 * 119.99637 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47395 * 64.78624 * 13 12 10 39 39 H 1.09007 * 109.47080 * 304.78945 * 13 12 10 40 40 H 0.97001 * 119.99960 * 184.99387 * 18 17 15 41 41 H 1.09003 * 117.50034 * 214.99852 * 23 14 13 42 42 H 1.09002 * 117.49971 * 0.02686 * 23 14 13 43 43 H 1.08996 * 117.49810 * 359.97342 * 24 14 13 44 44 H 1.08995 * 117.50078 * 144.97442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6052 -0.0011 6 6 3.3024 3.6776 0.0043 7 6 4.0579 2.5198 -0.0005 8 6 5.5627 2.6024 0.0001 9 6 6.0794 2.5039 -1.4366 10 6 7.5841 2.5859 -1.4360 11 8 8.1843 2.7112 -0.3896 12 7 8.2631 2.5210 -2.5985 13 6 9.7259 2.6001 -2.5980 14 6 10.2360 2.6227 -4.0401 15 6 9.9824 1.3703 -4.8390 16 1 9.1127 1.3030 -5.4760 17 6 10.8634 0.3127 -4.7613 18 7 11.9707 0.4294 -4.0615 19 14 10.4841 -1.2862 -5.6497 20 1 10.3636 -1.0262 -7.1068 21 1 11.5806 -2.2584 -5.4090 22 1 9.2066 -1.8452 -5.1391 23 6 10.1881 3.9580 -4.7856 24 6 11.5306 3.3888 -4.3197 25 6 3.4333 1.2855 0.0001 26 9 4.1713 0.1539 0.0002 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2137 2.3201 -0.0014 31 1 1.3342 4.5115 -0.0011 32 1 3.7917 4.6404 0.0085 33 1 5.9714 1.7821 0.5902 34 1 5.8743 3.5525 0.4340 35 1 5.6706 3.3242 -2.0268 36 1 5.7678 1.5537 -1.8705 37 1 7.7831 2.4211 -3.4355 38 1 10.1365 1.7328 -2.0808 39 1 10.0403 3.5102 -2.0870 40 1 12.6247 -0.2870 -4.0654 41 1 9.9731 3.9307 -5.8538 42 1 9.7936 4.8205 -4.2483 43 1 12.0186 3.8771 -3.4762 44 1 12.1989 2.9868 -5.0811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355408420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:57 Heat of formation + Delta-G solvation = -101.724285 kcal Electronic energy + Delta-G solvation = -26222.214178 eV Core-core repulsion = 22246.967006 eV Total energy + Delta-G solvation = -3975.247173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83468 -41.05422 -40.63759 -38.80103 -38.40019 -34.93820 -34.77430 -33.95849 -31.26911 -30.76821 -28.39667 -28.05198 -27.21602 -25.16826 -23.53380 -22.94214 -22.15849 -21.36797 -20.88043 -19.09736 -18.39442 -18.09738 -17.97797 -17.61895 -17.15025 -16.74537 -16.58611 -16.42555 -16.03432 -15.71330 -15.58090 -15.47211 -15.07374 -14.54678 -14.47897 -14.21697 -13.81096 -13.67480 -13.49215 -13.38183 -13.00662 -12.94109 -12.90876 -12.80828 -12.48132 -12.39776 -12.06381 -12.01661 -11.96602 -11.93491 -11.42471 -10.95476 -10.90668 -10.44227 -10.04759 -9.83090 -9.73361 -9.20955 -8.10321 -6.24592 0.09850 0.27400 1.41695 1.44529 1.49885 1.73890 2.18951 2.36231 2.42550 2.61715 3.17824 3.28449 3.47894 3.62574 3.85961 3.93676 4.06280 4.06579 4.23333 4.27457 4.33592 4.39049 4.39680 4.49575 4.55734 4.62526 4.66633 4.72130 4.73594 4.88994 5.00534 5.01305 5.05387 5.09203 5.16434 5.29119 5.34160 5.46217 5.56378 5.61400 5.69960 5.71960 5.77675 6.32260 6.36073 6.77062 6.84460 7.39017 7.45495 8.96506 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015517 B = 0.002743 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.086621 B =10204.357328 C =11301.809374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.341 6.341 3 C 0.082 3.918 4 C -0.182 4.182 5 C -0.076 4.076 6 C -0.124 4.124 7 C -0.081 4.081 8 C -0.059 4.059 9 C -0.122 4.122 10 C 0.502 3.498 11 O -0.597 6.597 12 N -0.701 5.701 13 C 0.178 3.822 14 C 0.002 3.998 15 C -0.506 4.506 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.291 1.291 22 H -0.274 1.274 23 C -0.174 4.174 24 C -0.155 4.155 25 C 0.030 3.970 26 F -0.153 7.153 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.158 0.842 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.022 0.978 39 H 0.040 0.960 40 H 0.259 0.741 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.583 7.254 6.293 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.255 6.255 3 C 0.036 3.964 4 C -0.200 4.200 5 C -0.094 4.094 6 C -0.142 4.142 7 C -0.082 4.082 8 C -0.097 4.097 9 C -0.161 4.161 10 C 0.290 3.710 11 O -0.479 6.479 12 N -0.350 5.350 13 C 0.054 3.946 14 C 0.001 3.999 15 C -0.544 4.544 16 H 0.082 0.918 17 C -0.177 4.177 18 N -0.546 5.546 19 Si 0.775 3.225 20 H -0.192 1.192 21 H -0.217 1.217 22 H -0.199 1.199 23 C -0.212 4.212 24 C -0.194 4.194 25 C 0.011 3.989 26 F -0.132 7.132 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.184 0.816 31 H 0.188 0.812 32 H 0.176 0.824 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.247 0.753 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.906 6.962 7.112 27.752 hybrid contribution 0.513 -1.648 -0.680 1.855 sum -25.393 5.313 6.432 26.729 Atomic orbital electron populations 1.23424 0.75627 1.05720 1.02888 1.86116 1.24235 1.26385 1.88806 1.19222 0.90369 0.86779 1.00035 1.21512 1.01580 0.90710 1.06239 1.21449 0.94165 0.98257 0.95511 1.21242 0.94216 0.97592 1.01153 1.19811 0.96061 0.91427 1.00931 1.20170 0.89398 1.04215 0.95880 1.21590 0.89334 1.05996 0.99193 1.21276 0.91319 0.75364 0.83039 1.90636 1.72072 1.52373 1.32850 1.45916 1.07484 1.72219 1.09383 1.20556 0.79552 0.97650 0.96870 1.19055 0.98556 0.91028 0.91234 1.20671 1.09467 0.98116 1.26151 0.91750 1.25710 0.95070 1.01265 0.95675 1.70104 1.09181 1.34023 1.41256 0.85764 0.77568 0.79863 0.79350 1.19182 1.21725 1.19936 1.23000 1.01039 0.97056 1.00057 1.22392 0.91128 1.04099 1.01745 1.17344 0.86915 0.82689 1.11990 1.91439 1.77097 1.50087 1.94606 0.90872 0.90902 0.86791 0.81625 0.81246 0.82411 0.92535 0.88719 0.85384 0.88765 0.75312 0.95970 0.94200 0.93226 0.89635 0.89182 0.91296 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.40 10.36 -93.01 -0.96 -8.36 16 3 C 0.08 1.76 6.69 22.53 0.15 1.91 16 4 C -0.18 -2.45 9.04 22.36 0.20 -2.24 16 5 C -0.08 -0.85 10.04 22.26 0.22 -0.63 16 6 C -0.12 -1.87 9.67 22.28 0.22 -1.65 16 7 C -0.08 -1.81 5.14 -19.84 -0.10 -1.91 16 8 C -0.06 -1.53 4.41 29.85 0.13 -1.40 16 9 C -0.12 -3.20 5.68 29.85 0.17 -3.03 16 10 C 0.50 18.45 7.83 87.66 0.69 19.13 16 11 O -0.60 -26.74 15.98 -3.02 -0.05 -26.79 16 12 N -0.70 -26.95 5.48 -463.07 -2.54 -29.49 16 13 C 0.18 8.26 5.50 86.38 0.48 8.74 16 14 C 0.00 0.09 1.47 -52.93 -0.08 0.02 16 15 C -0.51 -26.15 8.59 25.60 0.22 -25.93 16 16 H 0.06 3.19 7.82 -2.91 -0.02 3.16 16 17 C 0.02 1.27 5.43 84.65 0.46 1.73 16 18 N -0.91 -52.19 12.65 21.45 0.27 -51.92 16 19 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C -0.17 -6.94 9.96 30.62 0.30 -6.63 16 24 C -0.16 -7.18 9.14 30.62 0.28 -6.90 16 25 C 0.03 0.80 7.25 22.45 0.16 0.96 16 26 F -0.15 -5.00 16.41 44.97 0.74 -4.26 16 27 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.48 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.17 1.12 6.30 -2.91 -0.02 1.10 16 31 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 34 H 0.09 2.29 8.01 -2.39 -0.02 2.27 16 35 H 0.13 2.47 8.14 -2.38 -0.02 2.46 16 36 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.41 14.06 8.33 -92.71 -0.77 13.29 16 38 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 1.82 8.09 -2.38 -0.02 1.80 16 40 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 41 H 0.09 3.28 8.14 -2.39 -0.02 3.27 16 42 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -71.94 378.59 4.34 -67.60 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.24 Total: 24.72 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 4.61 Total: -16.55 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.27 Total: -81.41 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.01 Total: -35.15 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.74 Total: -4.26 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.94 4.34 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355408420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.122 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds