Wall clock time and date at job start Tue Mar 31 2020 12:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46999 * 2 1 4 4 C 1.34773 * 119.99939 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00118 * 359.97438 * 4 3 2 6 6 C 1.50706 * 120.00085 * 179.97438 * 4 3 2 7 7 C 1.50699 * 109.47133 * 180.02562 * 6 4 3 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99823 * 180.02562 * 7 6 4 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 H 1.08995 * 109.47213 * 300.00195 * 1 2 3 28 28 H 1.08996 * 109.46876 * 60.00445 * 1 2 3 29 29 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47069 * 240.00085 * 2 1 3 31 31 H 1.09002 * 109.47099 * 119.99941 * 2 1 3 32 32 H 0.96998 * 120.00317 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.47082 * 59.99968 * 6 4 3 34 34 H 1.09002 * 109.47217 * 300.00112 * 6 4 3 35 35 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 36 36 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 37 37 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 38 38 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 39 39 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 40 40 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 41 41 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 42 42 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 43 43 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6275 0.0005 5 8 4.1315 0.7057 0.0015 6 6 3.8457 3.0484 -0.0001 7 6 5.3527 3.0484 0.0001 8 8 5.9591 1.9981 0.0010 9 7 6.0265 4.2156 0.0001 10 6 7.4223 4.2156 0.0008 11 7 8.0783 3.0669 -0.0040 12 6 9.3970 3.0217 0.0025 13 6 10.1475 4.1809 0.0085 14 6 9.5018 5.4093 0.0072 15 6 8.1139 5.4268 -0.0007 16 8 7.4386 6.6069 -0.0018 17 6 8.2215 7.8024 0.0050 18 6 7.2942 9.0194 0.0021 19 6 8.1198 10.2800 0.0099 20 1 9.1981 10.2193 0.0168 21 6 7.4987 11.5110 0.0094 22 7 6.1856 11.5849 0.0015 23 14 8.5221 13.0736 0.0183 24 1 9.3854 13.1069 -1.1894 25 1 7.6221 14.2548 0.0156 26 1 9.3724 13.1015 1.2355 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3880 2.1185 -0.0004 33 1 3.4819 3.5627 0.8894 34 1 3.4828 3.5617 -0.8905 35 1 5.5415 5.0556 -0.0003 36 1 9.8968 2.0643 0.0027 37 1 11.2263 4.1320 0.0142 38 1 10.0660 6.3302 0.0114 39 1 8.8553 7.8268 -0.8815 40 1 8.8455 7.8230 0.8985 41 1 6.6704 8.9986 -0.8915 42 1 6.6601 8.9952 0.8884 43 1 5.7486 12.4509 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357426213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:05 Heat of formation + Delta-G solvation = -93.719519 kcal Electronic energy + Delta-G solvation = -25903.178856 eV Core-core repulsion = 21948.198757 eV Total energy + Delta-G solvation = -3954.980098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07197 -41.07429 -39.76202 -38.98826 -36.30172 -35.79254 -35.40999 -33.03373 -32.70463 -32.08438 -30.83486 -29.72081 -27.14778 -25.23610 -24.24458 -23.70352 -22.79173 -21.96287 -21.12790 -19.61333 -18.89450 -18.52196 -18.02478 -17.56606 -17.27482 -17.07250 -16.94381 -16.59455 -16.37040 -16.07671 -15.83840 -15.18843 -15.17005 -14.80677 -14.52356 -14.42627 -14.32450 -14.11491 -13.61817 -13.29256 -13.25420 -13.01455 -12.79356 -12.71392 -12.66740 -12.43638 -12.32505 -11.81948 -11.67454 -11.62263 -11.43676 -11.35893 -10.81662 -10.58040 -10.39162 -10.06378 -10.05276 -8.83362 -8.23838 -6.35841 0.11099 0.30055 1.44017 1.46207 1.53945 1.62596 1.66379 1.74739 2.12580 2.39604 2.45920 2.88969 3.11384 3.32379 3.60277 3.83644 3.86940 4.08212 4.15431 4.22292 4.22734 4.32008 4.35927 4.36335 4.42305 4.48180 4.53928 4.77180 4.96376 4.98083 5.07721 5.14633 5.28515 5.30281 5.33210 5.50549 5.53822 5.55029 5.75810 6.10417 6.24262 6.35580 6.58963 6.78647 6.98852 7.29001 7.33843 7.39496 8.88422 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002498 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.851643 B =11206.780074 C =13287.261303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 N -0.718 5.718 4 C 0.507 3.493 5 O -0.557 6.557 6 C -0.153 4.153 7 C 0.493 3.507 8 O -0.488 6.488 9 N -0.650 5.650 10 C 0.313 3.687 11 N -0.479 5.479 12 C 0.070 3.930 13 C -0.146 4.146 14 C -0.149 4.149 15 C 0.043 3.957 16 O -0.325 6.325 17 C 0.083 3.917 18 C 0.031 3.969 19 C -0.545 4.545 20 H 0.069 0.931 21 C 0.005 3.995 22 N -0.927 5.927 23 Si 0.969 3.031 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.419 0.581 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.431 0.569 36 H 0.181 0.819 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -16.712 0.024 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 N -0.373 5.373 4 C 0.292 3.708 5 O -0.434 6.434 6 C -0.195 4.195 7 C 0.279 3.721 8 O -0.357 6.357 9 N -0.301 5.301 10 C 0.080 3.920 11 N -0.194 5.194 12 C -0.086 4.086 13 C -0.167 4.167 14 C -0.176 4.176 15 C -0.007 4.007 16 O -0.238 6.238 17 C 0.008 3.992 18 C -0.006 4.006 19 C -0.583 4.583 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.793 3.207 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.191 1.191 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.257 0.743 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.270 0.730 36 H 0.198 0.802 37 H 0.192 0.808 38 H 0.175 0.825 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.838 -18.809 0.016 20.014 hybrid contribution 0.452 2.408 0.003 2.450 sum -6.386 -16.402 0.019 17.601 Atomic orbital electron populations 1.21944 0.91560 1.04126 1.03498 1.21334 0.96321 0.82559 1.01068 1.45902 1.06066 1.09882 1.75467 1.20440 0.82954 0.91079 0.76330 1.90863 1.56180 1.47335 1.48975 1.21646 0.90667 0.96495 1.10657 1.21000 0.91018 0.83012 0.77076 1.90920 1.70020 1.31194 1.43568 1.43564 1.02936 1.11076 1.72490 1.18038 0.85672 0.87092 1.01168 1.67700 1.11768 1.25323 1.14626 1.23003 0.87633 1.00289 0.97688 1.22251 1.03089 0.90976 1.00350 1.21905 0.91958 1.01335 1.02371 1.19706 0.92495 0.85797 1.02747 1.86017 1.37009 1.12323 1.88492 1.22964 0.94519 0.80846 1.00823 1.18935 0.94910 0.90363 0.96434 1.21376 0.93820 0.91173 1.51957 0.91234 1.25929 0.96141 1.02957 0.94383 1.70081 1.09764 1.26172 1.50648 0.85443 0.78316 0.77682 0.79281 1.19072 1.21017 1.19057 0.90919 0.90925 0.90030 0.93060 0.93060 0.74334 0.81950 0.81960 0.73007 0.80223 0.80805 0.82459 0.91900 0.91892 0.97809 0.97809 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.03 71.98 0.72 -0.33 16 2 C 0.11 1.61 6.39 86.38 0.55 2.16 16 3 N -0.72 -10.15 5.56 -463.06 -2.57 -12.72 16 4 C 0.51 11.63 7.82 87.66 0.69 12.31 16 5 O -0.56 -20.01 14.18 20.42 0.29 -19.72 16 6 C -0.15 -2.57 6.19 29.10 0.18 -2.39 16 7 C 0.49 14.58 7.79 87.66 0.68 15.26 16 8 O -0.49 -19.72 12.43 20.42 0.25 -19.47 16 9 N -0.65 -18.89 5.39 -308.03 -1.66 -20.56 16 10 C 0.31 10.64 7.45 132.98 0.99 11.63 16 11 N -0.48 -16.91 7.88 -192.58 -1.52 -18.43 16 12 C 0.07 1.93 11.17 84.64 0.95 2.87 16 13 C -0.15 -3.39 10.10 22.36 0.23 -3.16 16 14 C -0.15 -4.13 9.14 22.53 0.21 -3.93 16 15 C 0.04 1.43 6.72 22.70 0.15 1.58 16 16 O -0.33 -11.77 9.39 -93.25 -0.88 -12.65 16 17 C 0.08 3.18 4.70 71.98 0.34 3.52 16 18 C 0.03 1.52 5.34 29.85 0.16 1.68 16 19 C -0.55 -28.69 9.11 25.60 0.23 -28.46 16 20 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 21 C 0.00 0.26 5.46 84.65 0.46 0.72 16 22 N -0.93 -53.28 13.29 21.45 0.28 -53.00 16 23 Si 0.97 41.45 29.54 68.60 2.03 43.48 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.42 2.57 8.47 -92.71 -0.79 1.79 16 33 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.43 10.41 8.04 -92.71 -0.75 9.66 16 36 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 37 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.16 3.88 6.44 -2.91 -0.02 3.86 16 39 H 0.06 2.26 7.70 -2.39 -0.02 2.24 16 40 H 0.06 2.27 7.70 -2.39 -0.02 2.25 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -84.16 370.17 2.28 -81.88 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.48 Total: 17.71 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 6.54 Total: 13.48 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -5.46 Total: -104.70 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.33 Total: -51.84 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -84.16 2.28 -81.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357426213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.843 kcal (2) G-P(sol) polarization free energy of solvation -84.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds