Wall clock time and date at job start Tue Mar 31 2020 13:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.47362 * 2 1 4 4 C 1.34712 * 117.00161 * 179.97438 * 3 2 1 5 5 O 1.21467 * 119.99851 * 0.02562 * 4 3 2 6 6 C 1.47739 * 119.99992 * 180.02562 * 4 3 2 7 7 C 1.39635 * 120.53040 * 0.02562 * 6 4 3 8 8 N 1.31644 * 120.71111 * 180.02562 * 7 6 4 9 9 C 1.31895 * 121.96502 * 359.97390 * 8 7 6 10 10 C 1.50700 * 119.50002 * 180.02562 * 9 8 7 11 11 C 1.38944 * 120.99460 * 0.02562 * 9 8 7 12 12 N 1.40006 * 120.41408 * 180.02562 * 11 9 8 13 13 C 1.34774 * 119.99724 * 155.69893 * 12 11 9 14 14 O 1.21585 * 120.00277 * 354.30779 * 13 12 11 15 15 N 1.34784 * 120.00031 * 174.31488 * 13 12 11 16 16 C 1.46494 * 119.99919 * 180.27043 * 15 13 12 17 17 H 1.09005 * 109.47418 * 34.72518 * 16 15 13 18 18 C 1.53000 * 109.47210 * 274.72352 * 16 15 13 19 19 C 1.50699 * 109.46912 * 154.72425 * 16 15 13 20 20 H 1.08003 * 120.00499 * 25.05093 * 19 16 15 21 21 C 1.37883 * 120.00236 * 205.04615 * 19 16 15 22 22 N 1.31505 * 120.00464 * 185.00600 * 21 19 16 23 23 Si 1.86803 * 119.99751 * 5.01154 * 21 19 16 24 24 H 1.48504 * 109.47077 * 94.95525 * 23 21 19 25 25 H 1.48496 * 109.47114 * 214.95730 * 23 21 19 26 26 H 1.48509 * 109.47073 * 334.95898 * 23 21 19 27 27 C 1.39008 * 119.16653 * 0.27370 * 11 9 8 28 28 H 1.09004 * 109.46829 * 59.99732 * 1 2 3 29 29 H 1.08995 * 109.47355 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47145 * 299.99980 * 1 2 3 31 31 H 1.09008 * 109.46961 * 240.00317 * 2 1 3 32 32 H 1.08999 * 109.47379 * 120.00740 * 2 1 3 33 33 H 1.07997 * 119.63781 * 359.97438 * 7 6 4 34 34 H 1.09005 * 109.47322 * 269.97700 * 10 9 8 35 35 H 1.09003 * 109.47406 * 29.97956 * 10 9 8 36 36 H 1.08997 * 109.47228 * 149.98153 * 10 9 8 37 37 H 0.97001 * 120.00413 * 335.69164 * 12 11 9 38 38 H 0.96995 * 119.99420 * 359.97438 * 15 13 12 39 39 H 1.08997 * 109.47572 * 305.00314 * 18 16 15 40 40 H 1.08998 * 109.47354 * 65.00830 * 18 16 15 41 41 H 1.09011 * 109.47106 * 185.00108 * 18 16 15 42 42 H 0.96998 * 120.00185 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.88636 * 179.70318 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9142 2.9106 0.0011 7 6 3.0739 4.0258 0.0017 8 7 3.5733 5.2439 0.0017 9 6 4.8735 5.4655 0.0018 10 6 5.3846 6.8832 0.0024 11 6 5.7790 4.4116 0.0012 12 7 7.1567 4.6609 0.0018 13 6 8.0089 3.7337 0.4817 14 8 7.5778 2.7261 1.0082 15 7 9.3393 3.9233 0.3780 16 6 10.2657 2.9127 0.8943 17 1 9.8388 1.9203 0.7488 18 6 10.5019 3.1525 2.3868 19 6 11.5762 3.0089 0.1565 20 1 11.8705 3.9413 -0.3024 21 6 12.3997 1.9067 0.0672 22 7 13.5858 2.0153 -0.4902 23 14 11.8305 0.2588 0.7380 24 1 11.2300 -0.5416 -0.3593 25 1 12.9916 -0.4723 1.3058 26 1 10.8171 0.4803 1.8008 27 6 5.2998 3.1068 -0.0052 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0029 3.8875 0.0013 34 1 5.5082 7.2254 -1.0252 35 1 4.6705 7.5267 0.5163 36 1 6.3449 6.9230 0.5165 37 1 7.4978 5.5008 -0.3433 38 1 9.6833 4.7270 -0.0423 39 1 10.8450 4.1755 2.5407 40 1 9.5712 2.9955 2.9319 41 1 11.2581 2.4569 2.7514 42 1 14.1650 1.2398 -0.5532 43 1 5.9787 2.2669 -0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360155290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:33 Heat of formation + Delta-G solvation = -79.788114 kcal Electronic energy + Delta-G solvation = -26704.673571 eV Core-core repulsion = 22750.297584 eV Total energy + Delta-G solvation = -3954.375987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.21958 -40.27755 -39.21058 -36.74718 -35.70956 -34.72275 -33.30812 -32.54863 -31.90293 -31.09575 -29.42789 -28.16754 -25.32293 -24.34749 -24.02485 -22.79710 -21.60325 -20.96303 -20.06833 -18.75585 -18.40911 -17.43572 -16.74277 -16.58883 -16.50068 -16.08301 -15.61759 -15.15214 -14.91710 -14.49358 -14.27280 -14.15641 -13.75697 -13.40532 -13.23412 -13.08289 -12.72492 -12.65508 -12.51263 -12.44501 -12.34570 -12.17206 -11.90054 -11.72933 -11.22246 -10.98759 -10.91109 -10.83479 -10.75623 -10.55517 -10.06696 -9.85371 -9.75336 -9.38366 -9.26732 -8.75606 -8.45374 -8.05752 -6.27435 -4.31043 0.36694 1.13384 2.35790 2.38330 2.82499 3.24398 3.33503 3.39253 3.41519 3.76028 4.03272 4.29621 4.46652 4.47185 4.56382 4.65520 4.70817 4.83083 4.97052 4.99885 5.04751 5.13500 5.33015 5.36767 5.37556 5.47483 5.63709 5.73742 5.80955 6.08918 6.12210 6.22159 6.27261 6.46510 6.61808 6.68355 6.75935 6.97846 7.24686 7.31788 7.45731 7.58572 7.72169 8.14959 8.49472 8.71375 8.91198 9.33833 10.84127 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.003344 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.800555 B = 8371.026775 C =10131.396953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.515 3.485 5 O -0.493 6.493 6 C -0.163 4.163 7 C 0.129 3.871 8 N -0.469 5.469 9 C 0.119 3.881 10 C -0.108 4.108 11 C 0.128 3.872 12 N -0.683 5.683 13 C 0.690 3.310 14 O -0.579 6.579 15 N -0.708 5.708 16 C 0.248 3.752 17 H 0.052 0.948 18 C -0.151 4.151 19 C -0.534 4.534 20 H 0.079 0.921 21 C 0.082 3.918 22 N -0.888 5.888 23 Si 0.869 3.131 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.254 1.254 27 C -0.026 4.026 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.170 0.830 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.409 0.591 38 H 0.393 0.607 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.055 0.945 42 H 0.268 0.732 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.975 5.575 -0.180 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.272 6.272 4 C 0.358 3.642 5 O -0.381 6.381 6 C -0.167 4.167 7 C -0.031 4.031 8 N -0.178 5.178 9 C -0.021 4.021 10 C -0.165 4.165 11 C 0.028 3.972 12 N -0.330 5.330 13 C 0.391 3.609 14 O -0.457 6.457 15 N -0.359 5.359 16 C 0.146 3.854 17 H 0.070 0.930 18 C -0.210 4.210 19 C -0.572 4.572 20 H 0.097 0.903 21 C -0.122 4.122 22 N -0.524 5.524 23 Si 0.695 3.305 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.178 1.178 27 C -0.054 4.054 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.187 0.813 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.226 0.774 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -23.352 4.912 0.264 23.864 hybrid contribution 0.844 -1.083 -0.072 1.375 sum -22.508 3.829 0.192 22.832 Atomic orbital electron populations 1.21808 0.92461 1.03031 1.03579 1.23062 0.95322 0.79858 1.02932 1.86508 1.23599 1.32614 1.84520 1.20867 0.80631 0.89487 0.73169 1.90896 1.60266 1.42151 1.44748 1.19977 0.94181 0.91615 1.10965 1.22963 1.00418 0.86180 0.93540 1.67541 1.13016 1.23846 1.13378 1.21278 0.88405 0.95647 0.96810 1.20751 1.01760 0.90578 1.03460 1.18200 0.83984 0.93554 1.01419 1.42803 1.03325 1.21257 1.65640 1.16249 0.82194 0.83054 0.79441 1.90878 1.76706 1.28659 1.49482 1.45811 1.02667 1.25477 1.61906 1.19114 0.87802 0.87721 0.90798 0.93042 1.22308 0.99337 1.00983 0.98332 1.20963 1.00776 0.99529 1.35905 0.90288 1.24854 0.94494 0.98802 0.94076 1.69872 1.08372 1.30934 1.43248 0.86973 0.78983 0.83998 0.80559 1.19987 1.20935 1.17816 1.22134 0.94078 0.98061 0.91159 0.91401 0.90180 0.91382 0.91036 0.91010 0.81324 0.89811 0.89614 0.90551 0.75422 0.77363 0.93540 0.95138 0.92570 0.92191 0.80707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.35 -4.09 9.50 -40.53 -0.38 -4.47 16 4 C 0.52 7.48 7.91 34.61 0.27 7.75 16 5 O -0.49 -8.79 16.21 -19.24 -0.31 -9.11 16 6 C -0.16 -2.31 5.89 -104.86 -0.62 -2.93 16 7 C 0.13 1.54 10.78 -17.11 -0.18 1.35 16 8 N -0.47 -5.77 10.25 -8.98 -0.09 -5.87 16 9 C 0.12 1.42 6.80 -82.30 -0.56 0.86 16 10 C -0.11 -0.88 9.61 36.01 0.35 -0.53 16 11 C 0.13 1.82 6.42 -83.58 -0.54 1.28 16 12 N -0.68 -9.38 4.99 -14.15 -0.07 -9.45 16 13 C 0.69 12.76 8.35 -86.91 -0.73 12.03 16 14 O -0.58 -12.95 13.20 5.29 0.07 -12.88 16 15 N -0.71 -13.39 5.07 -59.81 -0.30 -13.69 16 16 C 0.25 5.74 2.09 -69.09 -0.14 5.60 16 17 H 0.05 1.32 5.15 -51.93 -0.27 1.05 16 18 C -0.15 -3.25 9.05 37.16 0.34 -2.91 16 19 C -0.53 -13.95 9.06 -34.44 -0.31 -14.26 16 20 H 0.08 2.16 8.02 -52.48 -0.42 1.74 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 22 N -0.89 -25.78 13.96 55.43 0.77 -25.01 16 23 Si 0.87 21.23 26.34 -169.99 -4.48 16.75 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.25 -6.11 5.96 56.52 0.34 -5.78 16 27 C -0.03 -0.43 8.36 -38.66 -0.32 -0.75 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.17 1.55 7.62 -52.49 -0.40 1.15 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.55 6.95 -51.93 -0.36 0.19 16 37 H 0.41 4.06 7.40 -40.82 -0.30 3.76 16 38 H 0.39 6.29 8.58 -40.82 -0.35 5.94 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.23 6.89 -51.92 -0.36 0.88 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.18 3.41 5.56 -52.49 -0.29 3.12 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -33.66 363.72 -7.00 -40.66 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.75 Total: 7.66 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -1.93 Total: 9.92 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.31 Total: -54.02 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.63 Total: -26.46 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.48 Total: 16.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.66 -7.00 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360155290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.128 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds