Wall clock time and date at job start Tue Mar 31 2020 13:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45197 * 109.47362 * 2 1 4 4 C 1.34712 * 117.00161 * 179.97438 * 3 2 1 5 5 O 1.21467 * 119.99851 * 0.02562 * 4 3 2 6 6 C 1.47739 * 119.99992 * 180.02562 * 4 3 2 7 7 C 1.39635 * 120.53040 * 0.02562 * 6 4 3 8 8 N 1.31644 * 120.71111 * 180.02562 * 7 6 4 9 9 C 1.31895 * 121.96502 * 359.97390 * 8 7 6 10 10 C 1.50700 * 119.50002 * 180.02562 * 9 8 7 11 11 C 1.38944 * 120.99460 * 0.02562 * 9 8 7 12 12 N 1.40006 * 120.41408 * 180.02562 * 11 9 8 13 13 C 1.34774 * 119.99724 * 155.69893 * 12 11 9 14 14 O 1.21585 * 120.00277 * 354.30779 * 13 12 11 15 15 N 1.34784 * 120.00031 * 174.31488 * 13 12 11 16 16 C 1.46494 * 119.99919 * 180.27043 * 15 13 12 17 17 H 1.09005 * 109.47418 * 34.72518 * 16 15 13 18 18 C 1.53000 * 109.47210 * 274.72352 * 16 15 13 19 19 C 1.50699 * 109.46912 * 154.72425 * 16 15 13 20 20 H 1.08003 * 120.00499 * 25.05093 * 19 16 15 21 21 C 1.37883 * 120.00236 * 205.04615 * 19 16 15 22 22 N 1.31505 * 120.00464 * 185.00600 * 21 19 16 23 23 Si 1.86803 * 119.99751 * 5.01154 * 21 19 16 24 24 H 1.48504 * 109.47077 * 94.95525 * 23 21 19 25 25 H 1.48496 * 109.47114 * 214.95730 * 23 21 19 26 26 H 1.48509 * 109.47073 * 334.95898 * 23 21 19 27 27 C 1.39008 * 119.16653 * 0.27370 * 11 9 8 28 28 H 1.09004 * 109.46829 * 59.99732 * 1 2 3 29 29 H 1.08995 * 109.47355 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47145 * 299.99980 * 1 2 3 31 31 H 1.09008 * 109.46961 * 240.00317 * 2 1 3 32 32 H 1.08999 * 109.47379 * 120.00740 * 2 1 3 33 33 H 1.07997 * 119.63781 * 359.97438 * 7 6 4 34 34 H 1.09005 * 109.47322 * 269.97700 * 10 9 8 35 35 H 1.09003 * 109.47406 * 29.97956 * 10 9 8 36 36 H 1.08997 * 109.47228 * 149.98153 * 10 9 8 37 37 H 0.97001 * 120.00413 * 335.69164 * 12 11 9 38 38 H 0.96995 * 119.99420 * 359.97438 * 15 13 12 39 39 H 1.08997 * 109.47572 * 305.00314 * 18 16 15 40 40 H 1.08998 * 109.47354 * 65.00830 * 18 16 15 41 41 H 1.09011 * 109.47106 * 185.00108 * 18 16 15 42 42 H 0.96998 * 120.00185 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.88636 * 179.70318 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3495 1.5454 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9142 2.9106 0.0011 7 6 3.0739 4.0258 0.0017 8 7 3.5733 5.2439 0.0017 9 6 4.8735 5.4655 0.0018 10 6 5.3846 6.8832 0.0024 11 6 5.7790 4.4116 0.0012 12 7 7.1567 4.6609 0.0018 13 6 8.0089 3.7337 0.4817 14 8 7.5778 2.7261 1.0082 15 7 9.3393 3.9233 0.3780 16 6 10.2657 2.9127 0.8943 17 1 9.8388 1.9203 0.7488 18 6 10.5019 3.1525 2.3868 19 6 11.5762 3.0089 0.1565 20 1 11.8705 3.9413 -0.3024 21 6 12.3997 1.9067 0.0672 22 7 13.5858 2.0153 -0.4902 23 14 11.8305 0.2588 0.7380 24 1 11.2300 -0.5416 -0.3593 25 1 12.9916 -0.4723 1.3058 26 1 10.8171 0.4803 1.8008 27 6 5.2998 3.1068 -0.0052 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0029 3.8875 0.0013 34 1 5.5082 7.2254 -1.0252 35 1 4.6705 7.5267 0.5163 36 1 6.3449 6.9230 0.5165 37 1 7.4978 5.5008 -0.3433 38 1 9.6833 4.7270 -0.0423 39 1 10.8450 4.1755 2.5407 40 1 9.5712 2.9955 2.9319 41 1 11.2581 2.4569 2.7514 42 1 14.1650 1.2398 -0.5532 43 1 5.9787 2.2669 -0.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360155290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:32 Heat of formation + Delta-G solvation = -103.615039 kcal Electronic energy + Delta-G solvation = -26705.706784 eV Core-core repulsion = 22750.297584 eV Total energy + Delta-G solvation = -3955.409200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35918 -41.45853 -40.47745 -37.80946 -37.24239 -36.19442 -34.50055 -34.32174 -32.63339 -32.44350 -30.85250 -29.14132 -27.30037 -25.24744 -25.19514 -23.59966 -23.09248 -22.07250 -21.71096 -20.23943 -19.54618 -18.82070 -18.16639 -17.74486 -17.70359 -17.23975 -16.95220 -16.44288 -16.28582 -15.89770 -15.58022 -15.13609 -15.06434 -14.70865 -14.62492 -14.35731 -14.28862 -13.66301 -13.51877 -13.36252 -13.34716 -13.14620 -13.09383 -12.96712 -12.81819 -12.56414 -12.41364 -12.21375 -12.07066 -11.85229 -11.59567 -11.45056 -11.25751 -10.87539 -10.83308 -10.58492 -10.01940 -9.26648 -8.40301 -6.45249 -0.68796 0.01178 1.25722 1.28302 1.34095 1.36362 1.45108 1.56585 2.01607 2.26019 2.64414 2.95307 3.12449 3.25268 3.48821 3.55354 3.76763 3.89630 3.98525 4.06041 4.11058 4.32941 4.44064 4.61891 4.67959 4.71767 4.77318 4.80451 4.84835 4.93390 4.93718 5.03752 5.05826 5.09291 5.22455 5.31957 5.34432 5.44670 5.55573 5.63086 5.83572 6.21970 6.51326 6.59055 6.70223 7.03645 7.20499 7.47729 8.74451 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.003344 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.800555 B = 8371.026775 C =10131.396953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.344 6.344 4 C 0.519 3.481 5 O -0.538 6.538 6 C -0.178 4.178 7 C 0.150 3.850 8 N -0.472 5.472 9 C 0.141 3.859 10 C -0.110 4.110 11 C 0.110 3.890 12 N -0.661 5.661 13 C 0.693 3.307 14 O -0.619 6.619 15 N -0.705 5.705 16 C 0.254 3.746 17 H 0.027 0.973 18 C -0.144 4.144 19 C -0.525 4.525 20 H 0.063 0.937 21 C 0.036 3.964 22 N -0.928 5.928 23 Si 0.917 3.083 24 H -0.280 1.280 25 H -0.275 1.275 26 H -0.251 1.251 27 C -0.049 4.049 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.200 0.800 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.430 0.570 38 H 0.408 0.592 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.048 0.952 42 H 0.270 0.730 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.537 7.558 0.065 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.261 6.261 4 C 0.364 3.636 5 O -0.429 6.429 6 C -0.182 4.182 7 C -0.009 4.009 8 N -0.181 5.181 9 C 0.000 4.000 10 C -0.167 4.167 11 C 0.011 3.989 12 N -0.310 5.310 13 C 0.393 3.607 14 O -0.500 6.500 15 N -0.357 5.357 16 C 0.149 3.851 17 H 0.045 0.955 18 C -0.203 4.203 19 C -0.563 4.563 20 H 0.081 0.919 21 C -0.164 4.164 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.206 1.206 25 H -0.200 1.200 26 H -0.175 1.175 27 C -0.078 4.078 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.217 0.783 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.270 0.730 38 H 0.244 0.756 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.971 6.964 0.489 26.893 hybrid contribution 1.484 -1.609 -0.191 2.197 sum -24.487 5.355 0.298 25.068 Atomic orbital electron populations 1.21825 0.89457 1.04553 1.04156 1.23402 0.97562 0.78636 1.02606 1.86509 1.21706 1.34132 1.83708 1.21033 0.81287 0.89241 0.72033 1.90873 1.61430 1.43481 1.47112 1.19994 0.93656 0.92229 1.12289 1.23406 1.01441 0.85241 0.90837 1.67740 1.12983 1.23586 1.13779 1.21870 0.87831 0.96780 0.93519 1.20955 1.02467 0.87877 1.05362 1.18300 0.84104 0.93458 1.03085 1.42367 1.02814 1.21030 1.64824 1.16260 0.82147 0.83128 0.79179 1.90876 1.77341 1.30616 1.51182 1.45371 1.02659 1.25317 1.62378 1.18795 0.86898 0.87749 0.91627 0.95548 1.22191 0.99315 1.01862 0.96882 1.21158 1.01659 0.98593 1.34922 0.91908 1.25466 0.94616 1.01601 0.94741 1.69957 1.09518 1.31859 1.45338 0.86207 0.78756 0.80927 0.79922 1.20594 1.19996 1.17489 1.21916 0.94712 0.98023 0.93120 0.90710 0.88182 0.90844 0.91342 0.91582 0.78284 0.87321 0.88388 0.89352 0.72994 0.75563 0.91802 0.94815 0.93284 0.92020 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.91 6.19 71.98 0.45 1.36 16 3 O -0.34 -7.68 9.50 -56.22 -0.53 -8.21 16 4 C 0.52 15.37 7.91 70.33 0.56 15.93 16 5 O -0.54 -20.30 16.21 19.94 0.32 -19.97 16 6 C -0.18 -5.00 5.89 -20.02 -0.12 -5.12 16 7 C 0.15 3.23 10.78 85.06 0.92 4.15 16 8 N -0.47 -10.18 10.25 -182.34 -1.87 -12.05 16 9 C 0.14 2.95 6.80 42.72 0.29 3.24 16 10 C -0.11 -1.32 9.61 71.24 0.68 -0.64 16 11 C 0.11 2.98 6.42 38.19 0.25 3.23 16 12 N -0.66 -17.31 4.99 -316.96 -1.58 -18.89 16 13 C 0.69 25.49 8.35 179.05 1.50 26.99 16 14 O -0.62 -28.44 13.20 -3.99 -0.05 -28.50 16 15 N -0.70 -26.29 5.07 -461.41 -2.34 -28.64 16 16 C 0.25 11.73 2.09 44.25 0.09 11.82 16 17 H 0.03 1.37 5.15 -2.38 -0.01 1.36 16 18 C -0.14 -6.08 9.05 71.98 0.65 -5.43 16 19 C -0.52 -27.61 9.06 25.60 0.23 -27.38 16 20 H 0.06 3.45 8.02 -2.91 -0.02 3.43 16 21 C 0.04 2.02 5.47 84.66 0.46 2.48 16 22 N -0.93 -54.66 13.96 21.45 0.30 -54.36 16 23 Si 0.92 44.43 26.34 68.60 1.81 46.24 16 24 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.25 -11.94 5.96 99.48 0.59 -11.35 16 27 C -0.05 -1.64 8.36 22.87 0.19 -1.45 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.20 2.98 7.62 -2.91 -0.02 2.96 16 34 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.90 6.95 -2.39 -0.02 0.88 16 37 H 0.43 7.43 7.40 -92.71 -0.69 6.74 16 38 H 0.41 12.57 8.58 -92.71 -0.80 11.77 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 2.12 6.89 -2.38 -0.02 2.10 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.14 5.68 5.56 -2.91 -0.02 5.66 16 Total: -1.00 -75.52 363.72 2.41 -73.11 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -0.53 Total: 22.76 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 6.89 Total: 28.50 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -5.49 Total: -113.93 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.26 Total: -56.68 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.81 Total: 46.24 kcal Total: -75.52 2.41 -73.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360155290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.506 kcal (2) G-P(sol) polarization free energy of solvation -75.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds