Wall clock time and date at job start Tue Mar 31 2020 13:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35732 * 116.99635 * 2 1 4 4 C 1.39311 * 120.17216 * 269.97448 * 3 2 1 5 5 N 1.40180 * 120.02730 * 0.04409 * 4 3 2 6 6 C 1.34772 * 119.99977 * 145.27197 * 5 4 3 7 7 O 1.21595 * 120.00312 * 4.49204 * 6 5 4 8 8 N 1.34778 * 119.99835 * 184.48412 * 6 5 4 9 9 C 1.46500 * 120.00155 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47181 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46961 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00002 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00475 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99687 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00474 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46823 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47390 * 120.00299 * 16 14 12 19 19 H 1.48502 * 109.47363 * 240.00808 * 16 14 12 20 20 C 1.38581 * 119.95446 * 180.02562 * 4 3 2 21 21 C 1.38502 * 120.32293 * 0.02562 * 20 4 3 22 22 C 1.37765 * 120.35826 * 359.74117 * 21 20 4 23 23 C 1.39808 * 120.03584 * 0.50997 * 22 21 20 24 24 C 1.47539 * 120.16362 * 179.76746 * 23 22 21 25 25 N 1.34778 * 120.00053 * 359.72867 * 24 23 22 26 26 O 1.21594 * 120.00042 * 179.72330 * 24 23 22 27 27 H 1.09004 * 109.47232 * 60.00536 * 1 2 3 28 28 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47974 * 300.00206 * 1 2 3 30 30 H 0.96998 * 119.99733 * 325.28292 * 5 4 3 31 31 H 0.97000 * 119.99938 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.46861 * 300.00213 * 9 8 6 33 33 H 1.09003 * 109.47004 * 60.00603 * 9 8 6 34 34 H 1.09001 * 109.46653 * 300.00018 * 10 9 8 35 35 H 1.09003 * 109.46979 * 60.00196 * 10 9 8 36 36 H 1.09007 * 109.47006 * 300.00081 * 11 10 9 37 37 H 1.08995 * 109.47452 * 59.99929 * 11 10 9 38 38 H 0.97002 * 119.99936 * 179.97438 * 15 14 12 39 39 H 1.08006 * 119.83543 * 179.97438 * 20 4 3 40 40 H 1.07999 * 119.81653 * 180.02562 * 21 20 4 41 41 H 1.08004 * 119.98176 * 180.26402 * 22 21 20 42 42 H 0.97001 * 119.99715 * 359.97438 * 25 24 23 43 43 H 0.96993 * 119.99900 * 179.72895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 2.3634 1.8331 -1.2044 5 7 2.0468 1.2125 -2.4208 6 6 1.6808 1.9578 -3.4823 7 8 1.7037 3.1714 -3.4101 8 7 1.2894 1.3580 -4.6241 9 6 0.8920 2.1681 -5.7782 10 6 0.4954 1.2483 -6.9347 11 6 0.0810 2.0944 -8.1402 12 6 -0.3091 1.1885 -9.2795 13 1 -0.2662 0.1164 -9.1560 14 6 -0.7219 1.7281 -10.4792 15 7 -0.7746 3.0336 -10.6295 16 14 -1.2061 0.6052 -11.8913 17 1 -1.0606 -0.8112 -11.4695 18 1 -2.6182 0.8660 -12.2694 19 1 -0.3248 0.8678 -13.0573 20 6 2.9930 3.0676 -1.1991 21 6 3.3088 3.6864 -0.0009 22 6 2.9957 3.0837 1.1977 23 6 2.3654 1.8358 1.2099 24 6 2.0334 1.1855 2.4920 25 7 2.3428 1.7918 3.6552 26 8 1.4806 0.1025 2.4991 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 2.0911 0.2466 -2.4984 31 1 1.2709 0.3899 -4.6816 32 1 0.0436 2.7961 -5.5064 33 1 1.7271 2.7982 -6.0846 34 1 1.3436 0.6200 -7.2065 35 1 -0.3398 0.6185 -6.6280 36 1 -0.7671 2.7230 -7.8685 37 1 0.9163 2.7239 -8.4467 38 1 -1.0646 3.4133 -11.4737 39 1 3.2392 3.5492 -2.1340 40 1 3.7990 4.6487 -0.0064 41 1 3.2410 3.5736 2.1285 42 1 2.7841 2.6557 3.6495 43 1 2.1211 1.3661 4.4980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360387226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:44 Heat of formation + Delta-G solvation = -82.407467 kcal Electronic energy + Delta-G solvation = -26125.640428 eV Core-core repulsion = 22171.150857 eV Total energy + Delta-G solvation = -3954.489571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.20525 -40.01687 -38.66356 -37.49911 -35.71072 -34.78197 -33.96780 -33.36301 -31.37709 -30.78990 -29.57376 -27.11586 -26.59273 -24.58033 -23.41531 -22.31528 -21.58653 -20.80345 -20.21162 -18.85616 -18.44115 -17.69955 -17.25864 -16.57465 -16.21618 -16.05200 -15.81954 -15.55283 -15.16821 -14.88802 -14.75685 -14.45764 -14.25084 -14.19305 -14.03857 -13.70985 -12.82318 -12.49956 -12.40796 -12.32665 -11.88021 -11.86006 -11.69519 -10.95754 -10.78643 -10.72259 -10.59492 -10.46129 -10.33263 -10.05511 -9.92991 -9.89445 -9.49317 -9.14735 -9.10758 -8.95847 -8.40147 -8.30969 -6.04567 -4.07663 0.46726 0.84060 2.45460 2.56510 3.06998 3.16059 3.25590 3.28358 3.36062 3.39486 3.73871 4.12421 4.42475 4.42531 4.52455 4.73612 5.00298 5.04984 5.15051 5.23738 5.31447 5.33308 5.53574 5.59086 5.69544 5.72943 5.88367 5.98274 6.10368 6.16402 6.38247 6.40907 6.51265 6.55084 6.66615 6.88509 6.94545 6.96003 7.24778 7.60464 7.72261 7.88075 7.92498 7.94037 8.34577 8.47298 8.99151 9.56778 11.06704 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.002033 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.636686 B =13766.935620 C =14466.708541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.318 6.318 3 C 0.125 3.875 4 C 0.149 3.851 5 N -0.685 5.685 6 C 0.700 3.300 7 O -0.577 6.577 8 N -0.733 5.733 9 C 0.134 3.866 10 C -0.121 4.121 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.082 4.082 21 C -0.113 4.113 22 C -0.095 4.095 23 C -0.149 4.149 24 C 0.564 3.436 25 N -0.854 5.854 26 O -0.522 6.522 27 H 0.041 0.959 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.412 0.588 31 H 0.397 0.603 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.130 0.870 42 H 0.400 0.600 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.477 -1.271 28.588 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.234 6.234 3 C 0.076 3.924 4 C 0.053 3.947 5 N -0.334 5.334 6 C 0.401 3.599 7 O -0.454 6.454 8 N -0.387 5.387 9 C 0.011 3.989 10 C -0.159 4.159 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.103 4.103 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.153 4.153 24 C 0.350 3.650 25 N -0.419 5.419 26 O -0.398 6.398 27 H 0.060 0.940 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.248 0.752 31 H 0.231 0.769 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.172 0.828 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.229 0.771 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.107 -0.925 28.206 29.362 hybrid contribution -0.305 -0.980 -0.563 1.171 sum 7.803 -1.905 27.642 28.785 Atomic orbital electron populations 1.22882 0.78033 1.03353 1.00243 1.85957 1.20332 1.23156 1.93959 1.18370 0.96947 0.87283 0.89759 1.17770 0.98795 0.94249 0.83935 1.42582 1.71249 1.10609 1.08914 1.15988 0.78257 0.85499 0.80194 1.90913 1.60258 1.11608 1.82612 1.45429 1.70389 1.10400 1.12438 1.21607 0.99940 0.93949 0.83408 1.21909 1.00308 0.98564 0.95136 1.19032 0.96877 0.94971 0.90500 1.21232 1.44552 0.93049 0.97215 0.92575 1.25034 0.95678 0.95027 0.98782 1.69974 1.47619 1.10214 1.25417 0.86520 0.78161 0.80900 0.82308 1.19760 1.21003 1.20990 1.21598 0.94457 0.93960 1.00290 1.21039 1.00316 1.00479 0.91315 1.21142 0.98200 0.93382 0.98762 1.19981 1.06366 0.96327 0.92668 1.18030 0.78265 0.84755 0.83942 1.43753 1.64649 1.25216 1.08264 1.90864 1.41206 1.20302 1.87456 0.94013 0.88689 0.93367 0.75222 0.76921 0.91672 0.91613 0.92631 0.92658 0.96220 0.96198 0.92962 0.82834 0.84620 0.85269 0.77075 0.76481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.49 101.05 1.06 1.58 16 2 O -0.32 -3.92 8.40 -40.81 -0.34 -4.26 16 3 C 0.12 1.47 5.75 -38.54 -0.22 1.25 16 4 C 0.15 1.78 6.32 -83.51 -0.53 1.25 16 5 N -0.69 -7.96 5.20 -14.13 -0.07 -8.03 16 6 C 0.70 10.09 8.41 -86.92 -0.73 9.36 16 7 O -0.58 -10.19 13.76 5.28 0.07 -10.12 16 8 N -0.73 -9.98 5.56 -65.22 -0.36 -10.34 16 9 C 0.13 2.25 5.67 -4.04 -0.02 2.23 16 10 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 12 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 13 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.08 -0.93 8.69 -39.36 -0.34 -1.27 16 21 C -0.11 -0.94 10.02 -39.66 -0.40 -1.33 16 22 C -0.10 -0.70 9.53 -39.17 -0.37 -1.07 16 23 C -0.15 -1.50 5.88 -104.87 -0.62 -2.11 16 24 C 0.56 5.66 8.04 -12.47 -0.10 5.56 16 25 N -0.85 -4.52 8.82 30.46 0.27 -4.25 16 26 O -0.52 -7.13 14.84 -16.63 -0.25 -7.38 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 30 H 0.41 3.86 8.58 -40.82 -0.35 3.51 16 31 H 0.40 4.30 8.49 -40.82 -0.35 3.95 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.15 1.97 6.18 -52.48 -0.32 1.65 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.45 6.40 -52.48 -0.34 0.11 16 42 H 0.40 0.95 6.86 -40.82 -0.28 0.67 16 43 H 0.40 1.63 8.93 -40.82 -0.36 1.27 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -35.59 366.51 -8.15 -43.73 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.74 Total: 4.38 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.96 Total: 0.25 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.57 Total: -48.43 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.52 Total: -21.76 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.59 -8.15 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360387226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.676 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds