Wall clock time and date at job start Tue Mar 31 2020 13:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35732 * 116.99635 * 2 1 4 4 C 1.39311 * 120.17216 * 269.97448 * 3 2 1 5 5 N 1.40180 * 120.02730 * 0.04409 * 4 3 2 6 6 C 1.34772 * 119.99977 * 145.27197 * 5 4 3 7 7 O 1.21595 * 120.00312 * 4.49204 * 6 5 4 8 8 N 1.34778 * 119.99835 * 184.48412 * 6 5 4 9 9 C 1.46500 * 120.00155 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47181 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46961 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00002 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00475 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99687 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00474 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46823 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47390 * 120.00299 * 16 14 12 19 19 H 1.48502 * 109.47363 * 240.00808 * 16 14 12 20 20 C 1.38581 * 119.95446 * 180.02562 * 4 3 2 21 21 C 1.38502 * 120.32293 * 0.02562 * 20 4 3 22 22 C 1.37765 * 120.35826 * 359.74117 * 21 20 4 23 23 C 1.39808 * 120.03584 * 0.50997 * 22 21 20 24 24 C 1.47539 * 120.16362 * 179.76746 * 23 22 21 25 25 N 1.34778 * 120.00053 * 359.72867 * 24 23 22 26 26 O 1.21594 * 120.00042 * 179.72330 * 24 23 22 27 27 H 1.09004 * 109.47232 * 60.00536 * 1 2 3 28 28 H 1.09003 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47974 * 300.00206 * 1 2 3 30 30 H 0.96998 * 119.99733 * 325.28292 * 5 4 3 31 31 H 0.97000 * 119.99938 * 0.02562 * 8 6 5 32 32 H 1.09002 * 109.46861 * 300.00213 * 9 8 6 33 33 H 1.09003 * 109.47004 * 60.00603 * 9 8 6 34 34 H 1.09001 * 109.46653 * 300.00018 * 10 9 8 35 35 H 1.09003 * 109.46979 * 60.00196 * 10 9 8 36 36 H 1.09007 * 109.47006 * 300.00081 * 11 10 9 37 37 H 1.08995 * 109.47452 * 59.99929 * 11 10 9 38 38 H 0.97002 * 119.99936 * 179.97438 * 15 14 12 39 39 H 1.08006 * 119.83543 * 179.97438 * 20 4 3 40 40 H 1.07999 * 119.81653 * 180.02562 * 21 20 4 41 41 H 1.08004 * 119.98176 * 180.26402 * 22 21 20 42 42 H 0.97001 * 119.99715 * 359.97438 * 25 24 23 43 43 H 0.96993 * 119.99900 * 179.72895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 2.3634 1.8331 -1.2044 5 7 2.0468 1.2125 -2.4208 6 6 1.6808 1.9578 -3.4823 7 8 1.7037 3.1714 -3.4101 8 7 1.2894 1.3580 -4.6241 9 6 0.8920 2.1681 -5.7782 10 6 0.4954 1.2483 -6.9347 11 6 0.0810 2.0944 -8.1402 12 6 -0.3091 1.1885 -9.2795 13 1 -0.2662 0.1164 -9.1560 14 6 -0.7219 1.7281 -10.4792 15 7 -0.7746 3.0336 -10.6295 16 14 -1.2061 0.6052 -11.8913 17 1 -1.0606 -0.8112 -11.4695 18 1 -2.6182 0.8660 -12.2694 19 1 -0.3248 0.8678 -13.0573 20 6 2.9930 3.0676 -1.1991 21 6 3.3088 3.6864 -0.0009 22 6 2.9957 3.0837 1.1977 23 6 2.3654 1.8358 1.2099 24 6 2.0334 1.1855 2.4920 25 7 2.3428 1.7918 3.6552 26 8 1.4806 0.1025 2.4991 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 2.0911 0.2466 -2.4984 31 1 1.2709 0.3899 -4.6816 32 1 0.0436 2.7961 -5.5064 33 1 1.7271 2.7982 -6.0846 34 1 1.3436 0.6200 -7.2065 35 1 -0.3398 0.6185 -6.6280 36 1 -0.7671 2.7230 -7.8685 37 1 0.9163 2.7239 -8.4467 38 1 -1.0646 3.4133 -11.4737 39 1 3.2392 3.5492 -2.1340 40 1 3.7990 4.6487 -0.0064 41 1 3.2410 3.5736 2.1285 42 1 2.7841 2.6557 3.6495 43 1 2.1211 1.3661 4.4980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360387226.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:43 Heat of formation + Delta-G solvation = -109.504757 kcal Electronic energy + Delta-G solvation = -26126.815454 eV Core-core repulsion = 22171.150857 eV Total energy + Delta-G solvation = -3955.664598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09812 -40.98491 -39.51122 -38.32468 -37.08823 -35.83919 -35.24283 -34.61789 -33.05493 -31.56524 -30.54270 -28.46578 -27.79981 -25.50592 -24.94626 -23.27004 -22.54080 -22.31573 -21.28258 -19.73651 -19.38052 -18.64982 -18.37129 -17.99781 -17.27296 -17.00269 -16.67770 -16.60979 -16.52985 -16.08965 -15.83833 -15.59336 -15.48849 -15.32335 -14.89856 -14.62633 -14.28040 -13.75504 -13.72539 -13.48094 -13.23352 -13.13901 -12.78902 -12.55132 -12.52233 -12.34694 -11.71135 -11.67088 -11.58278 -11.35782 -11.26683 -11.17173 -10.79394 -10.62698 -10.55768 -10.21814 -9.86752 -9.17588 -8.19609 -6.30579 -0.30418 0.08063 1.40590 1.41629 1.43175 1.55065 1.75510 2.03954 2.41620 2.45533 2.53004 2.95751 3.10208 3.14368 3.79871 3.90292 4.05803 4.11878 4.22705 4.24790 4.31540 4.34220 4.43104 4.55578 4.57499 4.73830 4.94282 4.95453 5.02046 5.08129 5.17125 5.26856 5.36034 5.44526 5.52984 5.69776 5.71730 5.81801 5.85117 5.91081 6.22979 6.40249 6.46117 6.85193 6.88443 7.33267 7.35908 7.38967 8.92573 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.002033 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.636686 B =13766.935620 C =14466.708541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.331 6.331 3 C 0.107 3.893 4 C 0.126 3.874 5 N -0.672 5.672 6 C 0.701 3.299 7 O -0.612 6.612 8 N -0.723 5.723 9 C 0.150 3.850 10 C -0.102 4.102 11 C 0.024 3.976 12 C -0.540 4.540 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.259 1.259 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.099 4.099 21 C -0.107 4.107 22 C -0.074 4.074 23 C -0.160 4.160 24 C 0.560 3.440 25 N -0.828 5.828 26 O -0.567 6.567 27 H 0.040 0.960 28 H 0.108 0.892 29 H 0.039 0.961 30 H 0.422 0.578 31 H 0.413 0.587 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.067 0.933 36 H -0.007 1.007 37 H -0.006 1.006 38 H 0.263 0.737 39 H 0.134 0.866 40 H 0.166 0.834 41 H 0.176 0.824 42 H 0.417 0.583 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.223 -1.948 30.350 31.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.247 6.247 3 C 0.060 3.940 4 C 0.030 3.970 5 N -0.321 5.321 6 C 0.402 3.598 7 O -0.491 6.491 8 N -0.378 5.378 9 C 0.026 3.974 10 C -0.140 4.140 11 C -0.014 4.014 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.202 4.202 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.183 1.183 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.093 4.093 23 C -0.164 4.164 24 C 0.346 3.654 25 N -0.394 5.394 26 O -0.446 6.446 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.259 0.741 31 H 0.250 0.750 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.012 0.988 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.152 0.848 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.249 0.751 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.887 -1.621 30.037 31.366 hybrid contribution -0.482 -0.682 -0.981 1.288 sum 8.405 -2.303 29.056 30.335 Atomic orbital electron populations 1.22909 0.77587 1.04101 0.99685 1.85930 1.20921 1.23823 1.94046 1.18574 0.97635 0.87473 0.90362 1.17929 1.00214 0.94972 0.83851 1.42341 1.70519 1.10891 1.08301 1.16025 0.78029 0.85140 0.80627 1.90892 1.61688 1.13270 1.83297 1.45067 1.70248 1.10950 1.11491 1.21158 0.98960 0.93476 0.83827 1.21604 1.01139 0.97913 0.93344 1.18942 0.94933 0.94933 0.92613 1.21710 1.44115 0.93855 0.98076 0.91608 1.26011 0.95703 0.96538 1.01909 1.70112 1.48757 1.12259 1.26304 0.85377 0.77697 0.79286 0.78541 1.18297 1.20645 1.20585 1.21622 0.95429 0.93998 1.00899 1.21389 0.99389 1.01312 0.90413 1.21593 0.95549 0.91882 1.00315 1.20210 1.06689 0.97305 0.92210 1.18118 0.78018 0.84372 0.84903 1.43536 1.63080 1.25485 1.07304 1.90844 1.43463 1.22263 1.88071 0.94167 0.87356 0.94194 0.74051 0.75026 0.93081 0.92794 0.91302 0.91430 0.98831 0.98720 0.92828 0.84821 0.81606 0.80653 0.75055 0.75411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.08 10.49 113.37 1.19 2.27 16 2 O -0.33 -8.17 8.40 -69.61 -0.58 -8.75 16 3 C 0.11 2.49 5.75 22.95 0.13 2.62 16 4 C 0.13 3.01 6.32 38.15 0.24 3.25 16 5 N -0.67 -15.66 5.20 -316.86 -1.65 -17.30 16 6 C 0.70 20.42 8.41 179.06 1.51 21.92 16 7 O -0.61 -22.20 13.76 -4.02 -0.06 -22.26 16 8 N -0.72 -19.46 5.56 -478.52 -2.66 -22.12 16 9 C 0.15 5.11 5.67 86.38 0.49 5.60 16 10 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 11 C 0.02 1.20 4.97 29.85 0.15 1.35 16 12 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 13 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 15 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 16 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.10 -2.19 8.69 22.41 0.19 -2.00 16 21 C -0.11 -1.51 10.02 22.22 0.22 -1.29 16 22 C -0.07 -0.84 9.53 22.54 0.21 -0.63 16 23 C -0.16 -2.94 5.88 -20.03 -0.12 -3.05 16 24 C 0.56 10.30 8.04 86.70 0.70 10.99 16 25 N -0.83 -6.32 8.82 -175.80 -1.55 -7.87 16 26 O -0.57 -15.23 14.84 16.94 0.25 -14.98 16 27 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 0.89 7.50 -2.39 -0.02 0.88 16 30 H 0.42 7.82 8.58 -92.71 -0.80 7.03 16 31 H 0.41 8.44 8.49 -92.71 -0.79 7.65 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 37 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.13 3.53 6.18 -2.91 -0.02 3.51 16 40 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.18 0.27 6.40 -2.91 -0.02 0.25 16 42 H 0.42 0.23 6.86 -92.71 -0.64 -0.40 16 43 H 0.41 2.22 8.93 -92.71 -0.83 1.39 16 Total: -1.00 -79.84 366.51 -0.12 -79.95 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -1.95 Total: 15.98 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.77 Total: 8.02 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -5.57 Total: -103.67 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -0.39 Total: -45.99 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -79.84 -0.12 -79.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360387226.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.550 kcal (2) G-P(sol) polarization free energy of solvation -79.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds