Wall clock time and date at job start Tue Mar 31 2020 12:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21226 * 119.99961 * 2 1 4 4 C 1.47412 * 120.00118 * 179.97438 * 2 1 3 5 5 C 1.39875 * 120.00767 * 174.46391 * 4 2 1 6 6 C 1.37673 * 120.04695 * 179.76436 * 5 4 2 7 7 C 1.39654 * 120.05603 * 0.51552 * 6 5 4 8 8 C 1.47925 * 119.99141 * 179.76411 * 7 6 5 9 9 O 1.21541 * 119.99797 * 179.72696 * 8 7 6 10 10 N 1.34770 * 119.99918 * 359.72302 * 8 7 6 11 11 C 1.46505 * 119.99984 * 179.72905 * 10 8 7 12 12 C 1.53007 * 109.46999 * 180.27521 * 11 10 8 13 13 C 1.52996 * 109.46838 * 299.99579 * 12 11 10 14 14 C 1.52991 * 109.47131 * 59.99833 * 12 11 10 15 15 C 1.53003 * 109.46754 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.46968 * 179.97438 * 15 12 11 17 17 H 1.08004 * 119.99732 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00110 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00074 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99881 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47232 * 89.99757 * 20 18 16 22 22 H 1.48492 * 109.47079 * 210.00325 * 20 18 16 23 23 H 1.48501 * 109.46977 * 329.99975 * 20 18 16 24 24 C 1.39794 * 120.01209 * 359.48465 * 7 6 5 25 25 F 1.35103 * 120.02181 * 180.27687 * 24 7 6 26 26 C 1.38148 * 119.95622 * 0.25549 * 24 7 6 27 27 H 1.08993 * 109.47295 * 185.09273 * 1 2 3 28 28 H 1.09005 * 109.47073 * 305.09295 * 1 2 3 29 29 H 1.09000 * 109.46968 * 65.08633 * 1 2 3 30 30 H 1.08002 * 119.98063 * 0.04783 * 5 4 2 31 31 H 1.07995 * 119.97354 * 180.28096 * 6 5 4 32 32 H 0.97009 * 120.00346 * 359.97438 * 10 8 7 33 33 H 1.08994 * 109.46495 * 300.27144 * 11 10 8 34 34 H 1.08993 * 109.46941 * 60.27329 * 11 10 8 35 35 H 1.08999 * 109.47373 * 60.00725 * 13 12 11 36 36 H 1.08997 * 109.46995 * 180.02562 * 13 12 11 37 37 H 1.09007 * 109.47386 * 299.99952 * 13 12 11 38 38 H 1.08994 * 109.47602 * 59.99617 * 14 12 11 39 39 H 1.09003 * 109.47040 * 180.02562 * 14 12 11 40 40 H 1.09008 * 109.47244 * 299.99706 * 14 12 11 41 41 H 1.09000 * 109.46906 * 300.00031 * 15 12 11 42 42 H 1.08999 * 109.47131 * 59.99536 * 15 12 11 43 43 H 0.97001 * 120.00012 * 179.97438 * 19 18 16 44 44 H 1.07997 * 120.02996 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2766 0.0006 5 6 3.6379 -1.2796 -0.1163 6 6 4.3275 -2.4712 -0.1110 7 6 3.6357 -3.6792 0.0003 8 6 4.3777 -4.9589 0.0006 9 8 3.7762 -6.0101 0.1024 10 7 5.7207 -4.9592 -0.1121 11 6 6.4561 -6.2263 -0.1058 12 6 7.9545 -5.9470 -0.2395 13 6 8.2204 -5.2095 -1.5534 14 6 8.4187 -5.0820 0.9339 15 6 8.7225 -7.2703 -0.2323 16 6 10.1983 -6.9953 -0.3647 17 1 10.5529 -5.9783 -0.4454 18 6 11.0957 -8.0418 -0.3827 19 7 12.3835 -7.8019 -0.4988 20 14 10.4822 -9.8007 -0.2424 21 1 10.2075 -10.3389 -1.5989 22 1 11.5168 -10.6343 0.4208 23 1 9.2346 -9.8270 0.5626 24 6 2.2427 -3.6791 0.1172 25 9 1.5737 -4.8474 0.2304 26 6 1.5506 -2.4834 0.1173 27 1 -0.3633 -1.0235 0.0912 28 1 -0.3633 0.5908 0.8409 29 1 -0.3633 0.4329 -0.9320 30 1 4.1740 -0.3464 -0.2061 31 1 5.4041 -2.4719 -0.1967 32 1 6.2008 -4.1202 -0.1938 33 1 6.2665 -6.7516 0.8302 34 1 6.1253 -6.8424 -0.9418 35 1 7.6734 -4.2668 -1.5581 36 1 9.2879 -5.0109 -1.6489 37 1 7.8897 -5.8258 -2.3895 38 1 8.2292 -5.6073 1.8699 39 1 9.4861 -4.8827 0.8383 40 1 7.8716 -4.1392 0.9292 41 1 8.5328 -7.7953 0.7039 42 1 8.3917 -7.8869 -1.0681 43 1 13.0149 -8.5382 -0.5111 44 1 0.4744 -2.4819 0.2072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360427502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:57 Heat of formation + Delta-G solvation = -102.158779 kcal Electronic energy + Delta-G solvation = -26404.520276 eV Core-core repulsion = 22429.254262 eV Total energy + Delta-G solvation = -3975.266014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.15435 -40.67679 -39.82603 -38.23295 -37.21345 -33.95313 -32.82154 -32.05826 -31.07873 -30.05327 -27.89541 -26.63361 -26.62895 -25.04981 -23.13218 -22.43375 -21.16217 -20.28526 -18.99177 -17.92430 -17.29655 -17.07164 -16.79011 -16.17297 -16.12740 -15.64112 -15.45001 -15.09851 -15.09222 -15.04256 -14.31954 -13.92981 -13.81434 -13.66220 -13.46291 -12.92289 -12.90710 -12.78763 -12.68457 -12.54024 -12.32447 -12.27562 -12.02871 -11.30598 -11.19439 -11.05064 -10.66690 -10.55748 -10.40154 -10.11362 -10.03227 -9.78227 -9.73495 -9.54537 -9.29433 -9.04111 -8.93592 -8.56470 -6.07156 -4.04770 -0.27297 0.62180 1.57977 2.65629 3.02806 3.29561 3.31920 3.33056 3.37857 3.41510 3.74413 4.00252 4.34399 4.42695 4.43031 4.48985 4.64007 4.77408 4.87045 5.07766 5.21124 5.24939 5.33723 5.38405 5.45304 5.47164 5.51272 5.56107 5.69859 6.02174 6.03238 6.09111 6.17822 6.23316 6.34679 6.53151 6.58054 6.82368 6.90023 6.95952 6.99266 7.14909 7.31527 7.44932 7.75026 8.11816 8.49215 8.96439 9.55371 11.05439 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.002475 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.629879 B =11309.371419 C =12175.095005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.397 3.603 3 O -0.448 6.448 4 C -0.124 4.124 5 C -0.080 4.080 6 C -0.069 4.069 7 C -0.136 4.136 8 C 0.546 3.454 9 O -0.524 6.524 10 N -0.711 5.711 11 C 0.125 3.875 12 C -0.063 4.063 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.002 4.002 16 C -0.512 4.512 17 H 0.078 0.922 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C 0.147 3.853 25 F -0.110 7.110 26 C -0.122 4.122 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.263 0.737 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.125 15.236 0.824 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.275 3.725 3 O -0.322 6.322 4 C -0.126 4.126 5 C -0.098 4.098 6 C -0.088 4.088 7 C -0.140 4.140 8 C 0.332 3.668 9 O -0.401 6.401 10 N -0.363 5.363 11 C 0.002 3.998 12 C -0.064 4.064 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.040 4.040 16 C -0.550 4.550 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.702 3.298 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C 0.126 3.874 25 F -0.088 7.088 26 C -0.141 4.141 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.236 0.764 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -23.060 14.867 0.893 27.452 hybrid contribution -0.047 -0.992 0.025 0.994 sum -23.107 13.874 0.918 26.968 Atomic orbital electron populations 1.22265 0.93154 1.05158 1.05418 1.22535 0.91877 0.87139 0.70993 1.90568 1.72059 1.33983 1.35613 1.20519 0.94621 0.94428 1.02990 1.21413 0.92942 0.99028 0.96448 1.21276 1.00740 0.90444 0.96352 1.20489 0.92890 0.95347 1.05273 1.18017 0.82737 0.88007 0.78079 1.90847 1.68215 1.32170 1.48858 1.46085 1.05796 1.11286 1.73134 1.21736 0.91903 0.83994 1.02125 1.20708 0.90850 0.99022 0.95790 1.21792 1.02883 0.97617 0.96416 1.21788 1.02526 0.97011 0.97363 1.19594 0.96345 0.91376 0.96667 1.21059 0.88672 0.95183 1.50036 0.90375 1.25002 0.94791 0.98957 0.94704 1.69898 1.01359 1.32021 1.50912 0.86857 0.78911 0.85324 0.78673 1.20364 1.21489 1.18988 1.17527 0.88779 0.82038 0.99012 1.91635 1.79580 1.45238 1.92322 1.21469 1.01345 0.89965 1.01273 0.89606 0.88433 0.88205 0.83463 0.83762 0.76387 0.91418 0.91415 0.95124 0.90701 0.93272 0.93264 0.90698 0.95135 0.96292 0.96743 0.92763 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.72 10.19 36.00 0.37 -0.35 16 2 C 0.40 2.81 7.22 -30.58 -0.22 2.58 16 3 O -0.45 -4.62 17.09 5.60 0.10 -4.53 16 4 C -0.12 -0.93 5.87 -105.01 -0.62 -1.55 16 5 C -0.08 -0.62 9.58 -39.18 -0.38 -1.00 16 6 C -0.07 -0.58 9.52 -39.26 -0.37 -0.96 16 7 C -0.14 -1.52 5.88 -104.82 -0.62 -2.14 16 8 C 0.55 7.87 7.77 -12.30 -0.10 7.78 16 9 O -0.52 -9.57 15.32 5.33 0.08 -9.49 16 10 N -0.71 -9.47 4.91 -61.22 -0.30 -9.77 16 11 C 0.12 2.01 4.56 -4.04 -0.02 1.99 16 12 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 13 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 14 C -0.13 -2.13 8.05 37.15 0.30 -1.83 16 15 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 16 C -0.51 -13.40 8.20 -34.44 -0.28 -13.69 16 17 H 0.08 2.16 5.92 -52.48 -0.31 1.85 16 18 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 20 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 24 C 0.15 1.58 7.27 -39.03 -0.28 1.29 16 25 F -0.11 -1.44 15.52 2.25 0.03 -1.41 16 26 C -0.12 -0.89 9.41 -39.08 -0.37 -1.26 16 27 H 0.09 0.16 5.62 -51.93 -0.29 -0.13 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.15 1.01 7.65 -52.49 -0.40 0.60 16 31 H 0.14 0.93 6.38 -52.49 -0.34 0.59 16 32 H 0.40 4.33 4.18 -40.82 -0.17 4.15 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 36 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 37 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.40 6.62 -51.93 -0.34 1.05 16 40 H 0.03 0.40 6.86 -51.92 -0.36 0.04 16 41 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 42 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.15 0.66 5.93 -52.49 -0.31 0.35 16 LS Contribution 360.29 15.07 5.43 5.43 Total: -1.00 -33.22 360.29 -6.80 -40.01 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.69 Total: -0.22 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.55 Total: -10.52 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.47 Total: -35.88 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.18 Total: -14.02 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.03 Total: -1.41 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.22 -6.80 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360427502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.144 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds