Wall clock time and date at job start Tue Mar 31 2020 12:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21226 * 119.99961 * 2 1 4 4 C 1.47412 * 120.00118 * 179.97438 * 2 1 3 5 5 C 1.39875 * 120.00767 * 174.46391 * 4 2 1 6 6 C 1.37673 * 120.04695 * 179.76436 * 5 4 2 7 7 C 1.39654 * 120.05603 * 0.51552 * 6 5 4 8 8 C 1.47925 * 119.99141 * 179.76411 * 7 6 5 9 9 O 1.21541 * 119.99797 * 179.72696 * 8 7 6 10 10 N 1.34770 * 119.99918 * 359.72302 * 8 7 6 11 11 C 1.46505 * 119.99984 * 179.72905 * 10 8 7 12 12 C 1.53007 * 109.46999 * 180.27521 * 11 10 8 13 13 C 1.52996 * 109.46838 * 299.99579 * 12 11 10 14 14 C 1.52991 * 109.47131 * 59.99833 * 12 11 10 15 15 C 1.53003 * 109.46754 * 179.97438 * 12 11 10 16 16 C 1.50700 * 109.46968 * 179.97438 * 15 12 11 17 17 H 1.08004 * 119.99732 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00110 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00074 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99881 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47232 * 89.99757 * 20 18 16 22 22 H 1.48492 * 109.47079 * 210.00325 * 20 18 16 23 23 H 1.48501 * 109.46977 * 329.99975 * 20 18 16 24 24 C 1.39794 * 120.01209 * 359.48465 * 7 6 5 25 25 F 1.35103 * 120.02181 * 180.27687 * 24 7 6 26 26 C 1.38148 * 119.95622 * 0.25549 * 24 7 6 27 27 H 1.08993 * 109.47295 * 185.09273 * 1 2 3 28 28 H 1.09005 * 109.47073 * 305.09295 * 1 2 3 29 29 H 1.09000 * 109.46968 * 65.08633 * 1 2 3 30 30 H 1.08002 * 119.98063 * 0.04783 * 5 4 2 31 31 H 1.07995 * 119.97354 * 180.28096 * 6 5 4 32 32 H 0.97009 * 120.00346 * 359.97438 * 10 8 7 33 33 H 1.08994 * 109.46495 * 300.27144 * 11 10 8 34 34 H 1.08993 * 109.46941 * 60.27329 * 11 10 8 35 35 H 1.08999 * 109.47373 * 60.00725 * 13 12 11 36 36 H 1.08997 * 109.46995 * 180.02562 * 13 12 11 37 37 H 1.09007 * 109.47386 * 299.99952 * 13 12 11 38 38 H 1.08994 * 109.47602 * 59.99617 * 14 12 11 39 39 H 1.09003 * 109.47040 * 180.02562 * 14 12 11 40 40 H 1.09008 * 109.47244 * 299.99706 * 14 12 11 41 41 H 1.09000 * 109.46906 * 300.00031 * 15 12 11 42 42 H 1.08999 * 109.47131 * 59.99536 * 15 12 11 43 43 H 0.97001 * 120.00012 * 179.97438 * 19 18 16 44 44 H 1.07997 * 120.02996 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0498 0.0000 4 6 2.2440 -1.2766 0.0006 5 6 3.6379 -1.2796 -0.1163 6 6 4.3275 -2.4712 -0.1110 7 6 3.6357 -3.6792 0.0003 8 6 4.3777 -4.9589 0.0006 9 8 3.7762 -6.0101 0.1024 10 7 5.7207 -4.9592 -0.1121 11 6 6.4561 -6.2263 -0.1058 12 6 7.9545 -5.9470 -0.2395 13 6 8.2204 -5.2095 -1.5534 14 6 8.4187 -5.0820 0.9339 15 6 8.7225 -7.2703 -0.2323 16 6 10.1983 -6.9953 -0.3647 17 1 10.5529 -5.9783 -0.4454 18 6 11.0957 -8.0418 -0.3827 19 7 12.3835 -7.8019 -0.4988 20 14 10.4822 -9.8007 -0.2424 21 1 10.2075 -10.3389 -1.5989 22 1 11.5168 -10.6343 0.4208 23 1 9.2346 -9.8270 0.5626 24 6 2.2427 -3.6791 0.1172 25 9 1.5737 -4.8474 0.2304 26 6 1.5506 -2.4834 0.1173 27 1 -0.3633 -1.0235 0.0912 28 1 -0.3633 0.5908 0.8409 29 1 -0.3633 0.4329 -0.9320 30 1 4.1740 -0.3464 -0.2061 31 1 5.4041 -2.4719 -0.1967 32 1 6.2008 -4.1202 -0.1938 33 1 6.2665 -6.7516 0.8302 34 1 6.1253 -6.8424 -0.9418 35 1 7.6734 -4.2668 -1.5581 36 1 9.2879 -5.0109 -1.6489 37 1 7.8897 -5.8258 -2.3895 38 1 8.2292 -5.6073 1.8699 39 1 9.4861 -4.8827 0.8383 40 1 7.8716 -4.1392 0.9292 41 1 8.5328 -7.7953 0.7039 42 1 8.3917 -7.8869 -1.0681 43 1 13.0149 -8.5382 -0.5111 44 1 0.4744 -2.4819 0.2072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360427502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:56 Heat of formation + Delta-G solvation = -122.778609 kcal Electronic energy + Delta-G solvation = -26405.414419 eV Core-core repulsion = 22429.254262 eV Total energy + Delta-G solvation = -3976.160157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.00772 -41.48774 -40.73415 -39.11618 -38.51280 -35.35872 -34.20416 -33.28627 -31.76215 -30.58712 -29.69361 -27.99591 -27.81162 -25.92945 -24.43162 -23.54248 -22.14840 -21.05253 -20.18111 -19.03167 -18.86380 -18.12518 -17.80322 -17.00711 -16.91285 -16.73154 -16.28819 -16.22751 -15.98513 -15.75570 -15.68314 -15.30013 -15.20674 -14.89601 -14.38080 -14.21260 -14.16443 -13.95537 -13.65467 -13.39142 -13.08328 -12.97740 -12.92672 -12.84979 -12.62278 -12.58708 -12.31023 -12.17518 -11.79003 -11.53517 -11.39960 -11.10096 -10.93536 -10.85977 -10.70746 -10.47129 -10.15110 -9.95107 -8.22591 -6.22514 -0.96948 -0.02372 0.92860 1.35406 1.38563 1.48047 1.80287 1.96951 2.38621 2.53301 2.75951 3.08022 3.12911 3.41239 3.49109 3.82114 3.88677 3.93943 4.03573 4.12528 4.15436 4.29852 4.53478 4.61564 4.67215 4.68096 4.69836 4.78303 4.81052 4.89955 4.93146 4.99288 5.01507 5.09063 5.24261 5.26298 5.30435 5.40482 5.41332 5.51049 5.55028 5.68793 5.76046 6.36679 6.38594 6.40077 6.84432 7.04702 7.40210 8.92798 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.002475 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.629879 B =11309.371419 C =12175.095005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.402 3.598 3 O -0.484 6.484 4 C -0.123 4.123 5 C -0.080 4.080 6 C -0.061 4.061 7 C -0.154 4.154 8 C 0.547 3.453 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.137 3.863 12 C -0.058 4.058 13 C -0.126 4.126 14 C -0.126 4.126 15 C -0.005 4.005 16 C -0.500 4.500 17 H 0.054 0.946 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.933 3.067 21 H -0.272 1.272 22 H -0.289 1.289 23 H -0.252 1.252 24 C 0.124 3.876 25 F -0.130 7.130 26 C -0.102 4.102 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.413 0.587 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.262 0.738 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.847 16.824 0.891 30.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.282 3.718 3 O -0.361 6.361 4 C -0.124 4.124 5 C -0.098 4.098 6 C -0.079 4.079 7 C -0.158 4.158 8 C 0.334 3.666 9 O -0.450 6.450 10 N -0.352 5.352 11 C 0.013 3.987 12 C -0.058 4.058 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.042 4.042 16 C -0.538 4.538 17 H 0.072 0.928 18 C -0.191 4.191 19 N -0.592 5.592 20 Si 0.758 3.242 21 H -0.198 1.198 22 H -0.216 1.216 23 H -0.176 1.176 24 C 0.103 3.897 25 F -0.108 7.108 26 C -0.120 4.120 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.252 0.748 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.071 0.929 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -25.794 16.482 0.958 30.626 hybrid contribution 0.770 -1.338 -0.003 1.544 sum -25.025 15.144 0.956 29.266 Atomic orbital electron populations 1.22335 0.90104 1.06833 1.06421 1.22996 0.93393 0.86084 0.69357 1.90570 1.73048 1.34981 1.37541 1.20766 0.94773 0.94890 1.02009 1.21635 0.93377 0.99174 0.95622 1.21422 1.01674 0.89450 0.95352 1.20315 0.93106 0.94525 1.07824 1.18470 0.82672 0.88677 0.76764 1.90821 1.69050 1.34106 1.50985 1.45862 1.05662 1.10860 1.72846 1.21377 0.90800 0.85109 1.01376 1.20559 0.91314 0.96931 0.96999 1.21732 1.01662 0.99384 0.95552 1.21730 1.01311 0.98690 0.96594 1.19577 0.94366 0.94090 0.96210 1.21357 0.90792 0.93999 1.47674 0.92776 1.25827 0.94939 1.03183 0.95185 1.70036 1.02671 1.33118 1.53371 0.85915 0.78724 0.80575 0.78968 1.19773 1.21557 1.17591 1.17875 0.88900 0.82393 1.00495 1.91584 1.79918 1.46588 1.92721 1.21692 1.02800 0.88372 0.99154 0.87608 0.87440 0.86999 0.82369 0.81728 0.74755 0.92334 0.92234 0.91131 0.93374 0.93599 0.93649 0.93359 0.91142 0.96688 0.96824 0.92887 0.79640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.67 10.19 71.23 0.73 0.06 16 2 C 0.40 4.51 7.22 28.10 0.20 4.71 16 3 O -0.48 -8.99 17.09 -2.86 -0.05 -9.04 16 4 C -0.12 -1.47 5.87 -20.12 -0.12 -1.59 16 5 C -0.08 -1.01 9.58 22.53 0.22 -0.80 16 6 C -0.06 -0.85 9.52 22.48 0.21 -0.63 16 7 C -0.15 -3.17 5.88 -19.99 -0.12 -3.29 16 8 C 0.55 15.14 7.77 86.81 0.67 15.82 16 9 O -0.57 -20.81 15.32 -3.84 -0.06 -20.87 16 10 N -0.70 -17.25 4.91 -465.90 -2.29 -19.54 16 11 C 0.14 4.24 4.56 86.38 0.39 4.63 16 12 C -0.06 -1.96 0.54 -52.18 -0.03 -1.99 16 13 C -0.13 -3.98 8.05 71.98 0.58 -3.40 16 14 C -0.13 -3.99 8.05 71.98 0.58 -3.41 16 15 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 16 C -0.50 -26.69 8.20 25.60 0.21 -26.48 16 17 H 0.05 3.10 5.92 -2.91 -0.02 3.08 16 18 C 0.00 0.28 5.47 84.65 0.46 0.74 16 19 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16 20 Si 0.93 44.17 27.47 68.60 1.88 46.05 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 24 C 0.12 2.45 7.27 22.62 0.16 2.62 16 25 F -0.13 -3.35 15.52 44.97 0.70 -2.65 16 26 C -0.10 -1.20 9.41 22.60 0.21 -0.98 16 27 H 0.11 -0.08 5.62 -2.39 -0.01 -0.10 16 28 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.16 1.70 7.65 -2.91 -0.02 1.68 16 31 H 0.17 1.50 6.38 -2.91 -0.02 1.48 16 32 H 0.41 7.62 4.18 -92.70 -0.39 7.23 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.63 6.86 -2.39 -0.02 1.62 16 36 H 0.05 1.78 6.62 -2.39 -0.02 1.77 16 37 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 40 H 0.07 1.64 6.86 -2.38 -0.02 1.62 16 41 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 42 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.19 0.84 5.93 -2.91 -0.02 0.82 16 Total: -1.00 -75.21 360.29 5.55 -69.66 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.60 Total: 8.34 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.47 Total: -14.09 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -1.99 Total: -77.39 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.11 Total: -29.91 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.70 Total: -2.65 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Total: -75.21 5.55 -69.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360427502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.121 kcal (2) G-P(sol) polarization free energy of solvation -75.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds