Wall clock time and date at job start Tue Mar 31 2020 12:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47239 * 2 1 4 4 C 1.46500 * 119.99889 * 270.00302 * 3 2 1 5 5 C 1.50699 * 109.47251 * 269.99700 * 4 3 2 6 6 H 1.08003 * 119.99517 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00420 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99985 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00326 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47021 * 59.99769 * 9 7 5 11 11 H 1.48502 * 109.47523 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47089 * 299.99970 * 9 7 5 13 13 C 1.34778 * 119.99956 * 89.99721 * 3 2 1 14 14 O 1.21595 * 119.99853 * 180.02562 * 13 3 2 15 15 N 1.34767 * 120.00199 * 0.02562 * 13 3 2 16 16 C 1.40185 * 120.00227 * 184.45102 * 15 13 3 17 17 C 1.38609 * 120.01821 * 325.28617 * 16 15 13 18 18 C 1.38462 * 120.32198 * 179.97438 * 17 16 15 19 19 C 1.37807 * 120.35983 * 359.69835 * 18 17 16 20 20 C 1.39766 * 120.02788 * 0.55583 * 19 18 17 21 21 C 1.47555 * 120.15715 * 179.74483 * 20 19 18 22 22 N 1.34770 * 120.00070 * 359.72145 * 21 20 19 23 23 O 1.21592 * 119.99572 * 179.72298 * 21 20 19 24 24 C 1.39274 * 120.02181 * 145.26229 * 16 15 13 25 25 O 1.35730 * 120.17745 * 0.04329 * 24 16 15 26 26 C 1.42902 * 117.00328 * 269.97966 * 25 24 16 27 27 H 1.09003 * 109.46931 * 300.00118 * 1 2 3 28 28 H 1.09001 * 109.47411 * 59.99631 * 1 2 3 29 29 H 1.08993 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47179 * 240.00341 * 2 1 3 31 31 H 1.09005 * 109.47482 * 119.99621 * 2 1 3 32 32 H 1.08994 * 109.47278 * 29.99735 * 4 3 2 33 33 H 1.09002 * 109.47217 * 149.99734 * 4 3 2 34 34 H 0.96994 * 120.00141 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00426 * 4.44499 * 15 13 3 36 36 H 1.07997 * 119.84168 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.82037 * 179.97438 * 18 17 16 38 38 H 1.08001 * 119.98587 * 180.29694 * 19 18 17 39 39 H 0.97000 * 120.00176 * 0.02562 * 22 21 20 40 40 H 0.97005 * 119.99983 * 179.72388 * 22 21 20 41 41 H 1.09000 * 109.47031 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.46619 * 299.99799 * 26 25 24 43 43 H 1.08997 * 109.46669 * 59.99541 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 6.1400 0.6397 -3.5955 11 1 6.1609 2.7965 -4.7032 12 1 6.8412 2.6187 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6478 3.1631 1.1672 15 7 2.0188 1.3811 2.3343 16 6 2.1625 2.0704 3.5466 17 6 3.1392 3.0449 3.6786 18 6 3.2864 3.7299 4.8729 19 6 2.4595 3.4543 5.9403 20 6 1.4731 2.4709 5.8253 21 6 0.5898 2.1696 6.9682 22 7 0.7368 2.8395 8.1284 23 8 -0.2707 1.3170 6.8633 24 6 1.3235 1.7767 4.6188 25 8 0.3658 0.8230 4.4945 26 6 -0.9173 1.2485 4.0313 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1411 -1.1384 34 1 3.6756 3.5178 -4.4430 35 1 1.7579 0.4468 2.3357 36 1 3.7887 3.2711 2.8459 37 1 4.0504 4.4874 4.9670 38 1 2.5764 3.9957 6.8675 39 1 1.4231 3.5199 8.2120 40 1 0.1535 2.6442 8.8785 41 1 -1.5870 0.3902 3.9772 42 1 -1.3264 1.9862 4.7216 43 1 -0.8169 1.6936 3.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360513835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:57 Heat of formation + Delta-G solvation = -62.993094 kcal Electronic energy + Delta-G solvation = -27711.884156 eV Core-core repulsion = 23758.236455 eV Total energy + Delta-G solvation = -3953.647701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.88539 -39.68711 -38.39657 -37.23735 -35.50543 -34.49365 -33.73648 -32.71356 -30.57871 -30.15844 -29.49608 -27.09413 -26.60172 -24.29713 -23.20207 -23.08047 -21.87331 -20.95262 -19.28160 -18.60202 -17.83543 -17.29538 -16.91313 -16.40970 -16.12700 -15.73265 -15.57015 -15.04596 -14.89890 -14.57147 -14.48807 -14.17862 -13.89971 -13.74513 -13.54491 -13.26488 -12.64180 -12.40498 -12.18654 -12.10067 -12.06908 -11.75033 -11.46727 -11.23533 -10.97287 -10.80559 -10.55666 -10.33228 -10.23776 -10.14840 -9.91374 -9.80148 -9.69835 -9.27709 -8.79437 -8.45195 -8.09083 -7.65119 -6.06220 -4.11175 0.74279 1.15876 2.80025 3.02850 3.30804 3.35244 3.36374 3.40131 3.44831 3.76421 4.05911 4.31586 4.46948 4.65650 4.79455 5.02157 5.21484 5.27568 5.31043 5.34371 5.39082 5.46856 5.55994 5.61514 5.65429 5.75201 5.97633 5.97876 6.16943 6.22175 6.30766 6.44484 6.52319 6.60061 6.75794 6.92157 7.12998 7.31708 7.46031 7.53192 7.62105 7.91259 8.10867 8.20446 8.51935 8.88973 9.16393 9.54218 11.01630 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.003406 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.453462 B = 8219.845346 C = 9217.079455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.699 3.301 14 O -0.570 6.570 15 N -0.691 5.691 16 C 0.158 3.842 17 C -0.083 4.083 18 C -0.113 4.113 19 C -0.101 4.101 20 C -0.151 4.151 21 C 0.565 3.435 22 N -0.855 5.855 23 O -0.524 6.524 24 C 0.118 3.882 25 O -0.318 6.318 26 C 0.050 3.950 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.407 0.593 36 H 0.157 0.843 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.400 0.600 40 H 0.403 0.597 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -2.128 19.872 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.401 3.599 14 O -0.447 6.447 15 N -0.340 5.340 16 C 0.061 3.939 17 C -0.104 4.104 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.155 4.155 21 C 0.352 3.648 22 N -0.420 5.420 23 O -0.401 6.401 24 C 0.069 3.931 25 O -0.234 6.234 26 C -0.044 4.044 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.245 0.755 36 H 0.174 0.826 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.229 0.771 40 H 0.233 0.767 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.715 -1.993 19.299 20.226 hybrid contribution 0.893 -0.124 -0.087 0.906 sum -4.822 -2.117 19.212 19.921 Atomic orbital electron populations 1.22239 0.96576 1.01610 1.02438 1.21394 0.93703 0.84191 1.02532 1.47629 1.66702 1.13351 1.06144 1.19237 0.96254 0.93465 0.76836 1.21414 0.96949 1.32025 1.06319 0.92497 1.24918 0.97844 0.94887 0.96357 1.69918 1.35754 1.33312 1.14388 0.86557 0.84776 0.78246 0.77813 1.20278 1.21196 1.20187 1.15926 0.79204 0.84727 0.80043 1.90875 1.51570 1.16740 1.85501 1.42930 1.73397 1.14582 1.03141 1.17839 0.95423 0.95759 0.84913 1.21690 0.95692 0.94601 0.98412 1.21029 0.99682 1.00146 0.92269 1.21073 0.95237 0.96613 0.99190 1.19923 1.00677 1.00249 0.94668 1.18066 0.83259 0.80822 0.82695 1.43758 1.40107 1.43051 1.15093 1.90847 1.34458 1.31901 1.82852 1.18356 0.90897 0.92151 0.91647 1.85943 1.20030 1.30835 1.86553 1.22853 0.82766 1.01332 0.97497 0.93136 0.91825 0.91961 0.89392 0.92379 0.94748 0.93726 0.92634 0.75495 0.82597 0.84835 0.85546 0.77098 0.76662 0.88958 0.93546 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.60 -12.53 2.46 -180.80 -0.44 -12.98 16 4 C 0.26 6.66 5.16 -5.19 -0.03 6.64 16 5 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.70 14.55 8.12 -86.93 -0.71 13.85 16 14 O -0.57 -13.90 13.34 5.28 0.07 -13.83 16 15 N -0.69 -11.55 5.07 -14.13 -0.07 -11.62 16 16 C 0.16 2.53 6.32 -83.51 -0.53 2.00 16 17 C -0.08 -1.28 8.69 -39.36 -0.34 -1.62 16 18 C -0.11 -1.31 10.02 -39.66 -0.40 -1.71 16 19 C -0.10 -1.02 9.53 -39.17 -0.37 -1.40 16 20 C -0.15 -1.92 5.88 -104.87 -0.62 -2.53 16 21 C 0.57 6.87 8.04 -12.46 -0.10 6.76 16 22 N -0.86 -6.16 8.82 30.46 0.27 -5.89 16 23 O -0.52 -8.16 14.84 -16.62 -0.25 -8.41 16 24 C 0.12 1.75 5.75 -38.54 -0.22 1.53 16 25 O -0.32 -4.76 8.40 -40.80 -0.34 -5.11 16 26 C 0.05 0.64 10.49 101.05 1.06 1.70 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.78 6.30 -51.93 -0.33 0.46 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.41 5.98 6.26 -40.82 -0.26 5.72 16 36 H 0.16 2.80 6.18 -52.49 -0.32 2.47 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 0.76 6.40 -52.49 -0.34 0.42 16 39 H 0.40 1.75 6.86 -40.82 -0.28 1.47 16 40 H 0.40 2.30 8.93 -40.82 -0.36 1.93 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.61 7.50 -51.93 -0.39 0.22 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -35.14 362.95 -7.48 -42.62 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.58 Total: 7.01 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -2.32 Total: 11.63 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.49 Total: -55.94 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.52 Total: -27.35 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.14 -7.48 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360513835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.376 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds