Wall clock time and date at job start Tue Mar 31 2020 12:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47239 * 2 1 4 4 C 1.46500 * 119.99889 * 270.00302 * 3 2 1 5 5 C 1.50699 * 109.47251 * 269.99700 * 4 3 2 6 6 H 1.08003 * 119.99517 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00420 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99985 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00326 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47021 * 59.99769 * 9 7 5 11 11 H 1.48502 * 109.47523 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47089 * 299.99970 * 9 7 5 13 13 C 1.34778 * 119.99956 * 89.99721 * 3 2 1 14 14 O 1.21595 * 119.99853 * 180.02562 * 13 3 2 15 15 N 1.34767 * 120.00199 * 0.02562 * 13 3 2 16 16 C 1.40185 * 120.00227 * 184.45102 * 15 13 3 17 17 C 1.38609 * 120.01821 * 325.28617 * 16 15 13 18 18 C 1.38462 * 120.32198 * 179.97438 * 17 16 15 19 19 C 1.37807 * 120.35983 * 359.69835 * 18 17 16 20 20 C 1.39766 * 120.02788 * 0.55583 * 19 18 17 21 21 C 1.47555 * 120.15715 * 179.74483 * 20 19 18 22 22 N 1.34770 * 120.00070 * 359.72145 * 21 20 19 23 23 O 1.21592 * 119.99572 * 179.72298 * 21 20 19 24 24 C 1.39274 * 120.02181 * 145.26229 * 16 15 13 25 25 O 1.35730 * 120.17745 * 0.04329 * 24 16 15 26 26 C 1.42902 * 117.00328 * 269.97966 * 25 24 16 27 27 H 1.09003 * 109.46931 * 300.00118 * 1 2 3 28 28 H 1.09001 * 109.47411 * 59.99631 * 1 2 3 29 29 H 1.08993 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47179 * 240.00341 * 2 1 3 31 31 H 1.09005 * 109.47482 * 119.99621 * 2 1 3 32 32 H 1.08994 * 109.47278 * 29.99735 * 4 3 2 33 33 H 1.09002 * 109.47217 * 149.99734 * 4 3 2 34 34 H 0.96994 * 120.00141 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00426 * 4.44499 * 15 13 3 36 36 H 1.07997 * 119.84168 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.82037 * 179.97438 * 18 17 16 38 38 H 1.08001 * 119.98587 * 180.29694 * 19 18 17 39 39 H 0.97000 * 120.00176 * 0.02562 * 22 21 20 40 40 H 0.97005 * 119.99983 * 179.72388 * 22 21 20 41 41 H 1.09000 * 109.47031 * 179.97438 * 26 25 24 42 42 H 1.08998 * 109.46619 * 299.99799 * 26 25 24 43 43 H 1.08997 * 109.46669 * 59.99541 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8775 8 7 3.3496 3.1274 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 6.1400 0.6397 -3.5955 11 1 6.1609 2.7965 -4.7032 12 1 6.8412 2.6187 -2.3820 13 6 2.2429 2.0166 1.1672 14 8 2.6478 3.1631 1.1672 15 7 2.0188 1.3811 2.3343 16 6 2.1625 2.0704 3.5466 17 6 3.1392 3.0449 3.6786 18 6 3.2864 3.7299 4.8729 19 6 2.4595 3.4543 5.9403 20 6 1.4731 2.4709 5.8253 21 6 0.5898 2.1696 6.9682 22 7 0.7368 2.8395 8.1284 23 8 -0.2707 1.3170 6.8633 24 6 1.3235 1.7767 4.6188 25 8 0.3658 0.8230 4.4945 26 6 -0.9173 1.2485 4.0313 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1411 -1.1384 34 1 3.6756 3.5178 -4.4430 35 1 1.7579 0.4468 2.3357 36 1 3.7887 3.2711 2.8459 37 1 4.0504 4.4874 4.9670 38 1 2.5764 3.9957 6.8675 39 1 1.4231 3.5199 8.2120 40 1 0.1535 2.6442 8.8785 41 1 -1.5870 0.3902 3.9772 42 1 -1.3264 1.9862 4.7216 43 1 -0.8169 1.6936 3.0414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360513835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:53 Heat of formation + Delta-G solvation = -88.400767 kcal Electronic energy + Delta-G solvation = -27712.985915 eV Core-core repulsion = 23758.236455 eV Total energy + Delta-G solvation = -3954.749460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.09014 -40.98464 -39.48923 -38.32640 -37.07825 -35.91179 -34.84766 -34.50782 -31.70754 -31.54602 -30.72569 -28.79912 -27.78652 -25.50575 -24.92100 -24.40018 -23.03492 -22.08082 -20.63755 -19.74332 -19.06950 -18.56256 -18.42097 -17.93170 -17.36000 -16.81995 -16.66068 -16.63041 -16.31206 -15.95198 -15.56517 -15.47925 -15.23092 -14.90860 -14.77717 -14.61769 -14.33364 -13.71835 -13.53895 -13.35048 -13.20961 -13.11482 -13.06528 -12.70489 -12.53493 -12.50804 -12.19693 -11.96684 -11.76591 -11.53885 -11.26551 -11.15406 -10.73153 -10.62802 -10.60071 -9.86303 -9.61298 -9.07541 -8.20770 -6.35687 -0.28635 0.11586 1.37974 1.41605 1.48675 1.61112 1.81135 2.17120 2.39858 2.48177 2.54138 2.94503 2.98714 3.09138 3.81903 3.91565 4.00153 4.07503 4.22005 4.31825 4.34512 4.36074 4.44463 4.48831 4.60157 4.74006 4.82735 4.91628 4.98043 5.03296 5.14584 5.19973 5.30806 5.32018 5.46005 5.56304 5.74086 5.76712 5.92740 6.01193 6.06793 6.42596 6.47535 6.72542 6.97723 7.30823 7.34730 7.57087 8.85659 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.003406 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.453462 B = 8219.845346 C = 9217.079455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.611 5.611 4 C 0.280 3.720 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.697 3.303 14 O -0.615 6.615 15 N -0.674 5.674 16 C 0.128 3.872 17 C -0.104 4.104 18 C -0.106 4.106 19 C -0.074 4.074 20 C -0.158 4.158 21 C 0.563 3.437 22 N -0.827 5.827 23 O -0.565 6.565 24 C 0.107 3.893 25 O -0.329 6.329 26 C 0.052 3.948 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.027 0.973 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.416 0.584 36 H 0.123 0.877 37 H 0.164 0.836 38 H 0.180 0.820 39 H 0.417 0.583 40 H 0.414 0.586 41 H 0.112 0.888 42 H 0.041 0.959 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -2.552 22.542 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.345 5.345 4 C 0.159 3.841 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.399 3.601 14 O -0.495 6.495 15 N -0.325 5.325 16 C 0.032 3.968 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.094 4.094 20 C -0.162 4.162 21 C 0.349 3.651 22 N -0.393 5.393 23 O -0.444 6.444 24 C 0.059 3.941 25 O -0.245 6.245 26 C -0.042 4.042 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.255 0.745 36 H 0.141 0.859 37 H 0.182 0.818 38 H 0.197 0.803 39 H 0.249 0.751 40 H 0.247 0.753 41 H 0.130 0.870 42 H 0.060 0.940 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.146 -2.438 22.053 22.776 hybrid contribution 0.687 0.066 -0.761 1.028 sum -4.459 -2.373 21.292 21.882 Atomic orbital electron populations 1.22155 0.94445 1.03630 1.01620 1.21686 0.95434 0.81516 1.03592 1.47494 1.67129 1.15055 1.04783 1.18657 0.95323 0.91367 0.78756 1.21680 0.97871 1.32102 1.06566 0.92966 1.25809 1.02261 0.94439 0.96362 1.70037 1.37778 1.34071 1.14818 0.85488 0.79169 0.78907 0.77355 1.18685 1.20365 1.20281 1.16034 0.78852 0.84294 0.80907 1.90836 1.53492 1.18792 1.86346 1.42566 1.72813 1.14770 1.02341 1.18034 0.96917 0.97026 0.84803 1.21607 0.95919 0.95777 0.99245 1.21354 1.00322 0.99754 0.90986 1.21570 0.92554 0.94833 1.00404 1.20201 1.01408 1.00384 0.94217 1.18029 0.82705 0.80831 0.83553 1.43509 1.40068 1.42035 1.13725 1.90833 1.36076 1.33884 1.83623 1.18517 0.90834 0.92638 0.92136 1.85917 1.20539 1.31382 1.86666 1.22913 0.82422 1.02099 0.96775 0.93017 0.93559 0.88418 0.89874 0.89710 0.95489 0.98149 0.92376 0.74455 0.85913 0.81803 0.80316 0.75069 0.75341 0.86989 0.94027 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 10.24 71.98 0.74 -3.47 16 2 C 0.10 3.19 5.93 86.38 0.51 3.70 16 3 N -0.61 -26.48 2.46 -844.20 -2.07 -28.55 16 4 C 0.28 15.12 5.16 85.63 0.44 15.56 16 5 C -0.54 -31.24 9.39 25.60 0.24 -31.00 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.60 5.46 84.65 0.46 1.06 16 8 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 9 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 C 0.70 30.51 8.12 179.06 1.45 31.96 16 14 O -0.61 -31.97 13.34 -4.02 -0.05 -32.03 16 15 N -0.67 -23.26 5.07 -316.87 -1.61 -24.87 16 16 C 0.13 4.17 6.32 38.14 0.24 4.42 16 17 C -0.10 -3.29 8.69 22.41 0.19 -3.09 16 18 C -0.11 -2.23 10.02 22.22 0.22 -2.01 16 19 C -0.07 -1.23 9.53 22.54 0.21 -1.01 16 20 C -0.16 -3.66 5.88 -20.03 -0.12 -3.77 16 21 C 0.56 12.23 8.04 86.70 0.70 12.93 16 22 N -0.83 -8.67 8.82 -175.80 -1.55 -10.22 16 23 O -0.56 -16.77 14.84 16.94 0.25 -16.52 16 24 C 0.11 3.12 5.75 22.94 0.13 3.25 16 25 O -0.33 -9.73 8.40 -69.58 -0.58 -10.31 16 26 C 0.05 1.32 10.49 113.37 1.19 2.51 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 31 H 0.08 2.23 6.30 -2.38 -0.02 2.21 16 32 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 34 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.42 12.32 6.26 -92.70 -0.58 11.74 16 36 H 0.12 4.71 6.18 -2.91 -0.02 4.69 16 37 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.18 1.02 6.40 -2.91 -0.02 1.01 16 39 H 0.42 1.48 6.86 -92.71 -0.64 0.85 16 40 H 0.41 3.20 8.93 -92.70 -0.83 2.37 16 41 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.04 1.08 7.50 -2.39 -0.02 1.06 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -81.63 362.95 2.35 -79.28 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.96 Total: 20.94 kcal Atomic # 6 Polarization: 24.41 SS G_CDS: 6.62 Total: 31.03 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -4.95 Total: -119.15 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -0.39 Total: -58.86 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -81.63 2.35 -79.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360513835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.123 kcal (2) G-P(sol) polarization free energy of solvation -81.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds