Wall clock time and date at job start Tue Mar 31 2020 13:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35960 * 117.00155 * 2 1 4 4 C 1.38662 * 119.99175 * 359.97438 * 3 2 1 5 5 C 1.38375 * 120.28281 * 180.02562 * 4 3 2 6 6 C 1.37887 * 120.27292 * 359.74049 * 5 4 3 7 7 C 1.39681 * 119.97680 * 0.51471 * 6 5 4 8 8 C 1.47700 * 120.13958 * 179.76310 * 7 6 5 9 9 O 1.21568 * 120.00071 * 133.18467 * 8 7 6 10 10 N 1.34779 * 120.00017 * 313.19265 * 8 7 6 11 11 C 1.46922 * 120.63128 * 354.82856 * 10 8 7 12 12 C 1.53186 * 108.89764 * 233.51790 * 11 10 8 13 13 C 1.53082 * 109.29822 * 305.58344 * 12 11 10 14 14 C 1.52998 * 109.45381 * 181.23917 * 13 12 11 15 15 C 1.50694 * 109.46908 * 64.79016 * 14 13 12 16 16 H 1.08000 * 120.00696 * 359.97438 * 15 14 13 17 17 C 1.37887 * 119.99990 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99329 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99965 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47290 * 60.00011 * 19 17 15 21 21 H 1.48508 * 109.46967 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47534 * 299.99746 * 19 17 15 23 23 C 1.53044 * 109.65483 * 61.14693 * 13 12 11 24 24 C 1.46928 * 120.62906 * 174.81384 * 10 8 7 25 25 C 1.38777 * 119.99494 * 179.97438 * 3 2 1 26 26 F 1.35096 * 120.13057 * 359.95579 * 25 3 2 27 27 H 1.09000 * 109.47047 * 300.00120 * 1 2 3 28 28 H 1.09004 * 109.47161 * 60.00382 * 1 2 3 29 29 H 1.09002 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.85995 * 0.04528 * 4 3 2 31 31 H 1.08008 * 119.85971 * 180.02562 * 5 4 3 32 32 H 1.07994 * 120.01044 * 180.27816 * 6 5 4 33 33 H 1.08999 * 109.58877 * 353.38099 * 11 10 8 34 34 H 1.09011 * 109.58232 * 113.66117 * 11 10 8 35 35 H 1.09003 * 109.49858 * 65.38756 * 12 11 10 36 36 H 1.08996 * 109.50207 * 185.48650 * 12 11 10 37 37 H 1.09001 * 109.34181 * 301.12916 * 13 12 11 38 38 H 1.09002 * 109.46972 * 184.79088 * 14 13 12 39 39 H 1.09005 * 109.47139 * 304.78743 * 14 13 12 40 40 H 0.97006 * 119.99321 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.49616 * 178.75138 * 23 13 12 42 42 H 1.08998 * 109.49800 * 58.65666 * 23 13 12 43 43 H 1.08999 * 109.59038 * 246.19805 * 24 10 8 44 44 H 1.09004 * 109.58534 * 6.48426 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2909 2.3742 -0.0005 5 6 1.9129 3.6103 -0.0011 6 6 3.2891 3.6960 0.0043 7 6 4.0609 2.5318 -0.0005 8 6 5.5353 2.6194 -0.0001 9 8 6.1847 1.9330 0.7648 10 7 6.1606 3.4604 -0.8475 11 6 5.3989 4.2123 -1.8540 12 6 6.0141 3.9581 -3.2337 13 6 7.5072 4.2932 -3.1914 14 6 8.1189 4.0700 -4.5759 15 6 7.5146 5.0434 -5.5549 16 1 6.7686 5.7502 -5.2230 17 6 7.9135 5.0309 -6.8747 18 7 8.8216 4.1698 -7.2790 19 14 7.1639 6.2369 -8.0883 20 1 7.4428 7.6257 -7.6424 21 1 7.7577 6.0203 -9.4322 22 1 5.6958 6.0239 -8.1553 23 6 8.2085 3.3918 -2.1727 24 6 7.6171 3.6430 -0.7820 25 6 3.4321 1.2839 0.0005 26 9 4.1704 0.1524 0.0020 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2126 2.3149 -0.0002 31 1 1.3179 4.5117 -0.0011 32 1 3.7701 4.6629 0.0084 33 1 4.3608 3.8801 -1.8499 34 1 5.4427 5.2772 -1.6249 35 1 5.8862 2.9093 -3.5014 36 1 5.5188 4.5861 -3.9742 37 1 7.6350 5.3363 -2.9019 38 1 9.1965 4.2262 -4.5264 39 1 7.9142 3.0507 -4.9035 40 1 9.1024 4.1613 -8.2074 41 1 9.2748 3.6173 -2.1607 42 1 8.0600 2.3476 -2.4479 43 1 7.8439 4.6616 -0.4671 44 1 8.0422 2.9367 -0.0689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399268982.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:13 Heat of formation + Delta-G solvation = -98.060355 kcal Electronic energy + Delta-G solvation = -27275.771558 eV Core-core repulsion = 23300.683265 eV Total energy + Delta-G solvation = -3975.088293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.88773 -40.65834 -39.81999 -37.68898 -37.14420 -34.05469 -32.32831 -31.45479 -30.81292 -30.21552 -28.08173 -27.72147 -25.11660 -23.62252 -23.17363 -22.56035 -21.67141 -20.16316 -19.19292 -18.19477 -17.53159 -17.16670 -16.67289 -16.35271 -16.29627 -15.81995 -15.27848 -15.06709 -14.92423 -14.71538 -14.53108 -14.02627 -13.68902 -13.41306 -13.15734 -13.00819 -12.81107 -12.72353 -12.64371 -12.23742 -11.95825 -11.80429 -11.70413 -11.47042 -11.19403 -11.00800 -10.79935 -10.70194 -10.47635 -10.15572 -9.91742 -9.65640 -9.29685 -9.20085 -8.98320 -8.53321 -8.40600 -8.35118 -6.00542 -4.02809 0.49782 0.88461 2.49654 2.74559 3.09138 3.30803 3.33004 3.36336 3.37341 3.89863 4.24248 4.39852 4.44019 4.58475 4.68176 4.75279 4.82367 4.96652 5.08999 5.12794 5.33906 5.38080 5.45074 5.49767 5.53243 5.64765 5.66016 5.74826 5.77645 5.92416 5.96554 6.05122 6.15253 6.35727 6.37688 6.51330 6.66153 6.88629 6.93985 6.98475 7.09922 7.45612 7.65948 7.81048 7.99140 8.14495 8.41021 9.03500 9.60837 11.10719 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.003169 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.341383 B = 8833.672299 C = 9667.676583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.089 3.911 4 C -0.165 4.165 5 C -0.095 4.095 6 C -0.096 4.096 7 C -0.121 4.121 8 C 0.559 3.441 9 O -0.532 6.532 10 N -0.595 5.595 11 C 0.096 3.904 12 C -0.119 4.119 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.130 4.130 24 C 0.113 3.887 25 C 0.119 3.881 26 F -0.115 7.115 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.261 0.739 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.593 -1.673 16.059 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.043 3.957 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.125 4.125 8 C 0.346 3.654 9 O -0.409 6.409 10 N -0.327 5.327 11 C -0.026 4.026 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.168 4.168 24 C -0.009 4.009 25 C 0.099 3.901 26 F -0.094 7.094 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.010 -2.336 16.298 23.674 hybrid contribution -0.546 0.593 -0.935 1.234 sum -17.556 -1.742 15.363 23.394 Atomic orbital electron populations 1.23147 0.77724 1.04484 1.01531 1.86167 1.21834 1.25403 1.88715 1.18829 0.90338 0.86013 1.00550 1.21283 1.00495 0.91398 1.05233 1.20938 0.94153 0.97453 0.98769 1.21185 0.93643 0.97314 0.99338 1.19852 0.94609 0.92319 1.05723 1.17947 0.86332 0.79953 0.81123 1.90801 1.66530 1.42829 1.40738 1.48048 1.08596 1.42762 1.33285 1.22193 0.95663 0.95712 0.89053 1.21917 0.97382 1.02362 0.94057 1.21203 0.93528 0.97662 0.97524 1.19117 0.95790 0.97059 0.88954 1.21195 1.22862 1.17909 0.93604 0.92647 1.25028 0.95184 0.95738 0.98519 1.69957 1.30770 1.36073 1.16620 0.86706 0.79436 0.81663 0.80455 1.20298 1.21375 1.20287 1.22031 1.00043 1.01128 0.93596 1.21736 0.78410 1.01604 0.99156 1.16837 0.85862 0.82264 1.05186 1.91568 1.76312 1.48064 1.93410 0.92369 0.92239 0.87806 0.84087 0.84235 0.83960 0.89954 0.91205 0.92261 0.89533 0.92285 0.96566 0.96634 0.92974 0.90935 0.91958 0.91442 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.42 10.36 -19.61 -0.20 -3.63 16 3 C 0.09 1.03 6.69 -39.23 -0.26 0.77 16 4 C -0.17 -1.37 9.03 -39.37 -0.36 -1.72 16 5 C -0.09 -0.74 10.02 -39.66 -0.40 -1.13 16 6 C -0.10 -0.96 7.48 -39.17 -0.29 -1.25 16 7 C -0.12 -1.66 4.90 -104.93 -0.51 -2.17 16 8 C 0.56 9.13 7.05 -12.39 -0.09 9.04 16 9 O -0.53 -10.41 15.96 5.31 0.08 -10.33 16 10 N -0.59 -8.97 2.97 -173.93 -0.52 -9.49 16 11 C 0.10 1.30 5.16 -3.72 -0.02 1.28 16 12 C -0.12 -2.05 5.19 -26.59 -0.14 -2.19 16 13 C -0.08 -1.54 2.10 -90.56 -0.19 -1.73 16 14 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 15 C -0.52 -13.90 8.39 -34.44 -0.29 -14.19 16 16 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.13 -2.21 5.37 -26.61 -0.14 -2.35 16 24 C 0.11 1.70 6.44 -3.71 -0.02 1.67 16 25 C 0.12 1.73 7.26 -38.82 -0.28 1.45 16 26 F -0.12 -1.99 16.28 2.25 0.04 -1.95 16 27 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.14 0.73 6.27 -52.49 -0.33 0.40 16 31 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 32 H 0.14 1.18 7.17 -52.49 -0.38 0.80 16 33 H 0.08 0.99 5.03 -51.93 -0.26 0.73 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.56 6.91 -51.93 -0.36 1.20 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 1.36 6.99 -51.93 -0.36 1.00 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -33.80 358.90 -7.92 -41.72 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.22 Total: -2.64 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.22 Total: -9.34 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.22 Total: -35.31 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.12 Total: -13.95 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.80 -7.92 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399268982.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.343 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds