Wall clock time and date at job start Tue Mar 31 2020 13:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35963 * 116.99878 * 2 1 4 4 C 1.38313 * 119.99404 * 0.27363 * 3 2 1 5 5 C 1.39606 * 119.82236 * 180.25581 * 4 3 2 6 6 C 1.47734 * 120.09876 * 179.74774 * 5 4 3 7 7 O 1.21566 * 119.99727 * 323.24939 * 6 5 4 8 8 N 1.34777 * 120.00374 * 143.25241 * 6 5 4 9 9 C 1.46919 * 120.63376 * 174.21795 * 8 6 5 10 10 C 1.53193 * 108.89560 * 126.29778 * 9 8 6 11 11 C 1.53357 * 109.14859 * 54.57675 * 10 9 8 12 12 C 1.52995 * 109.41840 * 178.67864 * 11 10 9 13 13 C 1.50703 * 109.47217 * 295.12879 * 12 11 10 14 14 H 1.07998 * 119.99575 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00134 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99906 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 119.99879 * 359.97438 * 15 13 12 18 18 H 1.48510 * 109.47292 * 90.00157 * 17 15 13 19 19 H 1.48498 * 109.47151 * 209.99789 * 17 15 13 20 20 H 1.48497 * 109.47457 * 330.00191 * 17 15 13 21 21 C 1.53047 * 109.60421 * 298.71249 * 11 10 9 22 22 C 1.46934 * 120.62502 * 354.19381 * 8 6 5 23 23 C 1.39647 * 119.80177 * 359.46685 * 5 4 3 24 24 C 1.37881 * 119.98438 * 0.25401 * 23 5 4 25 25 C 1.38528 * 120.18006 * 0.02587 * 24 23 5 26 26 F 1.35105 * 119.90472 * 179.97438 * 25 24 23 27 27 H 1.08992 * 109.47692 * 300.00328 * 1 2 3 28 28 H 1.09001 * 109.46791 * 60.00770 * 1 2 3 29 29 H 1.09008 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.08918 * 359.97213 * 4 3 2 31 31 H 1.09000 * 109.58887 * 246.15816 * 9 8 6 32 32 H 1.08998 * 109.58639 * 6.43717 * 9 8 6 33 33 H 1.08994 * 109.49992 * 174.66032 * 10 9 8 34 34 H 1.09006 * 109.49547 * 294.75594 * 10 9 8 35 35 H 1.08995 * 109.41968 * 58.75262 * 11 10 9 36 36 H 1.09007 * 109.47364 * 55.12783 * 12 11 10 37 37 H 1.09001 * 109.47412 * 175.12797 * 12 11 10 38 38 H 0.96995 * 120.00299 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.50233 * 301.42138 * 21 11 10 40 40 H 1.09003 * 109.49103 * 181.32267 * 21 11 10 41 41 H 1.08991 * 109.59052 * 353.42020 * 22 8 6 42 42 H 1.09006 * 109.58279 * 113.70519 * 22 8 6 43 43 H 1.08003 * 120.00752 * 180.23310 * 23 5 4 44 44 H 1.08005 * 119.91280 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2928 2.3713 0.0057 5 6 1.9302 3.6133 0.0003 6 6 1.1314 4.8561 0.0007 7 8 0.0906 4.9098 -0.6251 8 7 1.5566 5.9303 0.6949 9 6 0.8420 7.2108 0.6044 10 6 0.4864 7.6814 2.0182 11 6 1.7618 7.7286 2.8684 12 6 1.4188 8.2296 4.2727 13 6 0.9354 9.6548 4.1936 14 1 0.8790 10.1535 3.2373 15 6 0.5662 10.3223 5.3421 16 7 0.1449 11.5662 5.2731 17 14 0.6645 9.4600 6.9961 18 1 2.0055 9.6856 7.5932 19 1 -0.3785 10.0054 7.9015 20 1 0.4449 8.0033 6.8088 21 6 2.3692 6.3269 2.9613 22 6 2.7433 5.8428 1.5569 23 6 3.3252 3.6775 0.0004 24 6 4.0684 2.5161 0.0005 25 6 3.4352 1.2841 0.0001 26 9 4.1689 0.1496 -0.0003 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2142 2.3164 0.0097 31 1 1.4796 7.9518 0.1222 32 1 -0.0703 7.0798 0.0226 33 1 0.0405 8.6748 1.9696 34 1 -0.2231 6.9853 2.4657 35 1 2.4803 8.4059 2.4067 36 1 0.6357 7.6036 4.7006 37 1 2.3070 8.1816 4.9027 38 1 -0.1145 12.0360 6.0810 39 1 1.6422 5.6437 3.4000 40 1 3.2625 6.3582 3.5852 41 1 3.0841 4.8086 1.6056 42 1 3.5368 6.4703 1.1510 43 1 3.8218 4.6366 0.0000 44 1 5.1473 2.5671 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399346510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:16 Heat of formation + Delta-G solvation = -92.059683 kcal Electronic energy + Delta-G solvation = -26996.125509 eV Core-core repulsion = 23021.297425 eV Total energy + Delta-G solvation = -3974.828084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.15028 -40.92875 -39.77290 -37.76620 -37.28851 -34.21469 -32.26508 -31.57808 -31.06249 -30.25852 -28.68602 -27.69668 -25.21146 -23.80839 -23.14381 -22.59561 -21.56557 -20.25329 -19.28806 -18.28301 -17.87937 -17.24453 -16.81598 -16.57432 -16.31405 -15.95968 -15.41242 -15.17095 -14.90732 -14.66728 -14.42662 -14.24830 -13.96620 -13.54031 -13.27650 -13.09186 -13.01233 -12.94511 -12.70106 -12.37528 -12.14791 -12.02080 -11.69597 -11.54401 -11.41412 -11.18983 -10.92137 -10.69229 -10.43392 -10.01577 -9.85065 -9.73532 -9.53939 -9.37051 -9.10676 -8.64033 -8.56296 -8.47997 -6.07125 -4.04780 0.38340 0.79327 2.49800 2.69939 2.90380 3.27533 3.29600 3.35932 3.38774 3.78036 4.19176 4.27522 4.42368 4.57487 4.62540 4.80449 4.80957 4.94881 5.04932 5.13825 5.18587 5.21108 5.26697 5.40866 5.45284 5.49724 5.54729 5.65492 5.69944 5.80878 5.82902 5.94975 6.10474 6.18684 6.23280 6.36773 6.49292 6.76611 6.80683 6.82261 6.95209 7.19229 7.35572 7.40899 7.76529 8.05349 8.50417 8.97503 9.55803 11.06144 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002766 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.581329 B =10121.679682 C =10335.946206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.090 3.910 4 C -0.129 4.129 5 C -0.094 4.094 6 C 0.557 3.443 7 O -0.539 6.539 8 N -0.596 5.596 9 C 0.109 3.891 10 C -0.119 4.119 11 C -0.073 4.073 12 C -0.009 4.009 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C -0.134 4.134 22 C 0.092 3.908 23 C -0.099 4.099 24 C -0.122 4.122 25 C 0.088 3.912 26 F -0.129 7.129 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.148 0.852 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.148 0.852 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -21.016 -11.221 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.044 3.956 4 C -0.149 4.149 5 C -0.098 4.098 6 C 0.345 3.655 7 O -0.418 6.418 8 N -0.328 5.328 9 C -0.013 4.013 10 C -0.157 4.157 11 C -0.091 4.091 12 C -0.046 4.046 13 C -0.555 4.555 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.172 4.172 22 C -0.030 4.030 23 C -0.118 4.118 24 C -0.141 4.141 25 C 0.068 3.932 26 F -0.107 7.107 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.166 0.834 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.929 -21.051 -11.437 24.680 hybrid contribution -0.059 -0.331 1.099 1.149 sum 5.869 -21.381 -10.338 24.464 Atomic orbital electron populations 1.23192 0.77420 1.04513 1.02052 1.86140 1.22120 1.25219 1.88709 1.18835 0.90756 0.85660 1.00391 1.21170 1.01002 0.89915 1.02788 1.19809 0.93802 0.93447 1.02694 1.18154 0.84796 0.82915 0.79660 1.90779 1.23417 1.83238 1.44340 1.48073 1.29462 1.10967 1.44278 1.21847 0.97338 0.82787 0.99307 1.21960 0.98403 1.02683 0.92641 1.21076 0.96012 0.93513 0.98542 1.19613 0.96055 0.97142 0.91817 1.21131 1.43314 0.95733 0.95294 0.90826 1.25030 0.94741 0.94664 0.99080 1.69907 1.44975 1.10592 1.28791 0.86811 0.77882 0.80480 0.84272 1.20374 1.21478 1.19112 1.22080 1.01469 0.98847 0.94775 1.22314 0.87035 1.02339 0.91336 1.21322 0.92294 0.99018 0.99140 1.20966 1.01386 0.89704 1.02003 1.17177 0.85929 0.83061 1.07053 1.91519 1.76523 1.48760 1.93942 0.92107 0.92041 0.87676 0.83452 0.91314 0.89367 0.89078 0.92368 0.91639 0.96708 0.97049 0.92770 0.91947 0.90855 0.89189 0.90918 0.83413 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.21 10.36 -19.62 -0.20 -3.41 16 3 C 0.09 0.97 6.69 -39.24 -0.26 0.71 16 4 C -0.13 -1.41 8.60 -39.04 -0.34 -1.75 16 5 C -0.09 -1.08 5.25 -104.98 -0.55 -1.63 16 6 C 0.56 7.85 7.36 -12.38 -0.09 7.76 16 7 O -0.54 -9.31 16.28 5.31 0.09 -9.22 16 8 N -0.60 -7.98 2.97 -173.92 -0.52 -8.50 16 9 C 0.11 1.59 6.43 -3.71 -0.02 1.56 16 10 C -0.12 -2.04 5.21 -26.45 -0.14 -2.18 16 11 C -0.07 -1.28 2.10 -90.41 -0.19 -1.47 16 12 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 13 C -0.52 -13.93 8.94 -34.44 -0.31 -14.24 16 14 H 0.07 2.12 7.30 -52.49 -0.38 1.73 16 15 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 16 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 17 Si 0.88 21.27 27.47 -169.99 -4.67 16.61 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C -0.13 -1.86 5.36 -26.61 -0.14 -2.00 16 22 C 0.09 1.03 4.79 -3.71 -0.02 1.01 16 23 C -0.10 -0.88 7.35 -39.19 -0.29 -1.17 16 24 C -0.12 -1.01 10.00 -39.60 -0.40 -1.40 16 25 C 0.09 0.91 7.31 -39.16 -0.29 0.62 16 26 F -0.13 -1.44 17.10 2.25 0.04 -1.40 16 27 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 28 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 29 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.15 1.53 6.25 -52.49 -0.33 1.20 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 33 H 0.09 1.75 6.93 -51.93 -0.36 1.39 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 37 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.85 4.52 -51.93 -0.23 0.61 16 42 H 0.07 0.70 8.06 -51.93 -0.42 0.29 16 43 H 0.15 1.07 6.16 -52.48 -0.32 0.74 16 44 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -32.60 354.63 -7.48 -40.08 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.10 Total: -1.44 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.24 Total: -11.56 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.26 Total: -34.99 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.12 Total: -12.63 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.60 -7.48 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399346510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.977 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds