Wall clock time and date at job start Tue Mar 31 2020 13:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35963 * 116.99878 * 2 1 4 4 C 1.38313 * 119.99404 * 0.27363 * 3 2 1 5 5 C 1.39606 * 119.82236 * 180.25581 * 4 3 2 6 6 C 1.47734 * 120.09876 * 179.74774 * 5 4 3 7 7 O 1.21566 * 119.99727 * 323.24939 * 6 5 4 8 8 N 1.34777 * 120.00374 * 143.25241 * 6 5 4 9 9 C 1.46919 * 120.63376 * 174.21795 * 8 6 5 10 10 C 1.53193 * 108.89560 * 126.29778 * 9 8 6 11 11 C 1.53357 * 109.14859 * 54.57675 * 10 9 8 12 12 C 1.52995 * 109.41840 * 178.67864 * 11 10 9 13 13 C 1.50703 * 109.47217 * 295.12879 * 12 11 10 14 14 H 1.07998 * 119.99575 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00134 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99906 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 119.99879 * 359.97438 * 15 13 12 18 18 H 1.48510 * 109.47292 * 90.00157 * 17 15 13 19 19 H 1.48498 * 109.47151 * 209.99789 * 17 15 13 20 20 H 1.48497 * 109.47457 * 330.00191 * 17 15 13 21 21 C 1.53047 * 109.60421 * 298.71249 * 11 10 9 22 22 C 1.46934 * 120.62502 * 354.19381 * 8 6 5 23 23 C 1.39647 * 119.80177 * 359.46685 * 5 4 3 24 24 C 1.37881 * 119.98438 * 0.25401 * 23 5 4 25 25 C 1.38528 * 120.18006 * 0.02587 * 24 23 5 26 26 F 1.35105 * 119.90472 * 179.97438 * 25 24 23 27 27 H 1.08992 * 109.47692 * 300.00328 * 1 2 3 28 28 H 1.09001 * 109.46791 * 60.00770 * 1 2 3 29 29 H 1.09008 * 109.47202 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.08918 * 359.97213 * 4 3 2 31 31 H 1.09000 * 109.58887 * 246.15816 * 9 8 6 32 32 H 1.08998 * 109.58639 * 6.43717 * 9 8 6 33 33 H 1.08994 * 109.49992 * 174.66032 * 10 9 8 34 34 H 1.09006 * 109.49547 * 294.75594 * 10 9 8 35 35 H 1.08995 * 109.41968 * 58.75262 * 11 10 9 36 36 H 1.09007 * 109.47364 * 55.12783 * 12 11 10 37 37 H 1.09001 * 109.47412 * 175.12797 * 12 11 10 38 38 H 0.96995 * 120.00299 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.50233 * 301.42138 * 21 11 10 40 40 H 1.09003 * 109.49103 * 181.32267 * 21 11 10 41 41 H 1.08991 * 109.59052 * 353.42020 * 22 8 6 42 42 H 1.09006 * 109.58279 * 113.70519 * 22 8 6 43 43 H 1.08003 * 120.00752 * 180.23310 * 23 5 4 44 44 H 1.08005 * 119.91280 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2928 2.3713 0.0057 5 6 1.9302 3.6133 0.0003 6 6 1.1314 4.8561 0.0007 7 8 0.0906 4.9098 -0.6251 8 7 1.5566 5.9303 0.6949 9 6 0.8420 7.2108 0.6044 10 6 0.4864 7.6814 2.0182 11 6 1.7618 7.7286 2.8684 12 6 1.4188 8.2296 4.2727 13 6 0.9354 9.6548 4.1936 14 1 0.8790 10.1535 3.2373 15 6 0.5662 10.3223 5.3421 16 7 0.1449 11.5662 5.2731 17 14 0.6645 9.4600 6.9961 18 1 2.0055 9.6856 7.5932 19 1 -0.3785 10.0054 7.9015 20 1 0.4449 8.0033 6.8088 21 6 2.3692 6.3269 2.9613 22 6 2.7433 5.8428 1.5569 23 6 3.3252 3.6775 0.0004 24 6 4.0684 2.5161 0.0005 25 6 3.4352 1.2841 0.0001 26 9 4.1689 0.1496 -0.0003 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2142 2.3164 0.0097 31 1 1.4796 7.9518 0.1222 32 1 -0.0703 7.0798 0.0226 33 1 0.0405 8.6748 1.9696 34 1 -0.2231 6.9853 2.4657 35 1 2.4803 8.4059 2.4067 36 1 0.6357 7.6036 4.7006 37 1 2.3070 8.1816 4.9027 38 1 -0.1145 12.0360 6.0810 39 1 1.6422 5.6437 3.4000 40 1 3.2625 6.3582 3.5852 41 1 3.0841 4.8086 1.6056 42 1 3.5368 6.4703 1.1510 43 1 3.8218 4.6366 0.0000 44 1 5.1473 2.5671 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399346510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:15 Heat of formation + Delta-G solvation = -111.745512 kcal Electronic energy + Delta-G solvation = -26996.979150 eV Core-core repulsion = 23021.297425 eV Total energy + Delta-G solvation = -3975.681726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.94111 -41.85184 -40.65336 -38.84714 -38.24442 -35.74657 -34.12046 -32.61242 -31.87897 -31.20765 -30.24370 -28.37579 -26.58908 -24.91685 -24.18761 -23.48201 -22.93884 -21.48205 -20.46762 -19.28330 -18.77321 -18.69051 -18.04264 -17.41200 -17.20014 -16.96723 -16.37854 -16.21147 -16.13035 -15.65245 -15.36201 -15.29901 -15.25884 -15.00265 -14.51937 -14.34681 -14.18997 -13.95626 -13.81739 -13.60182 -13.22004 -13.10758 -12.84932 -12.67262 -12.43271 -12.35587 -12.21563 -12.07338 -12.02024 -11.70406 -11.34797 -11.20010 -11.09017 -10.81081 -10.70028 -10.13524 -9.68399 -9.33459 -8.24864 -6.26606 -0.42497 0.08703 1.35895 1.38571 1.49174 1.52340 1.86135 2.09278 2.38335 2.46073 3.02451 3.11015 3.29645 3.59404 3.84281 3.88501 3.97919 4.01540 4.07989 4.18664 4.27693 4.29202 4.40640 4.42711 4.52993 4.61274 4.65570 4.70018 4.76953 4.80860 4.85785 4.94151 4.95054 5.08078 5.10315 5.20557 5.24151 5.31547 5.42494 5.48276 5.58736 5.73279 5.76278 6.10598 6.32628 6.35413 6.81760 6.98547 7.37384 8.91678 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019692 B = 0.002766 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.581329 B =10121.679682 C =10335.946206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.082 3.918 4 C -0.136 4.136 5 C -0.108 4.108 6 C 0.556 3.444 7 O -0.580 6.580 8 N -0.595 5.595 9 C 0.118 3.882 10 C -0.113 4.113 11 C -0.070 4.070 12 C -0.008 4.008 13 C -0.517 4.517 14 H 0.039 0.961 15 C 0.001 3.999 16 N -0.954 5.954 17 Si 0.945 3.055 18 H -0.265 1.265 19 H -0.291 1.291 20 H -0.250 1.250 21 C -0.128 4.128 22 C 0.093 3.907 23 C -0.090 4.090 24 C -0.104 4.104 25 C 0.076 3.924 26 F -0.136 7.136 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.127 0.873 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.009 0.991 37 H 0.021 0.979 38 H 0.263 0.737 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.173 0.827 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.025 -23.256 -10.884 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.035 3.965 4 C -0.156 4.156 5 C -0.111 4.111 6 C 0.346 3.654 7 O -0.462 6.462 8 N -0.326 5.326 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.088 4.088 12 C -0.045 4.045 13 C -0.555 4.555 14 H 0.057 0.943 15 C -0.195 4.195 16 N -0.596 5.596 17 Si 0.769 3.231 18 H -0.190 1.190 19 H -0.217 1.217 20 H -0.174 1.174 21 C -0.166 4.166 22 C -0.028 4.028 23 C -0.108 4.108 24 C -0.123 4.123 25 C 0.056 3.944 26 F -0.114 7.114 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.027 0.973 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.191 0.809 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.526 -23.313 -11.100 27.192 hybrid contribution -0.901 0.384 0.926 1.348 sum 7.625 -22.929 -10.174 26.218 Atomic orbital electron populations 1.23418 0.75921 1.06098 1.02313 1.86120 1.23770 1.25311 1.88728 1.18959 0.91214 0.85656 1.00627 1.21144 1.01023 0.90086 1.03339 1.19677 0.94782 0.92009 1.04623 1.18563 0.84398 0.83578 0.78869 1.90757 1.25364 1.83941 1.46108 1.48121 1.29881 1.10175 1.44426 1.21611 0.97632 0.84027 0.97142 1.21813 0.98115 1.00644 0.94553 1.20997 0.96137 0.96135 0.95554 1.19592 0.95877 0.94000 0.95052 1.21507 1.42237 0.97938 0.93804 0.94292 1.25979 0.94741 0.95330 1.03475 1.70068 1.47046 1.12558 1.29898 0.85735 0.78256 0.79975 0.79111 1.19028 1.21684 1.17362 1.22013 1.01814 0.95643 0.97111 1.22538 0.86532 1.04489 0.89193 1.21548 0.90987 1.00368 0.97884 1.21291 1.02928 0.88292 0.99751 1.17521 0.85867 0.83660 1.07399 1.91503 1.76564 1.49340 1.94041 0.91817 0.91827 0.85483 0.83852 0.89753 0.90537 0.92236 0.93670 0.91640 0.97263 0.96053 0.92806 0.92712 0.88749 0.86548 0.88127 0.80941 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.48 10.36 -93.13 -0.96 -7.44 16 3 C 0.08 1.65 6.69 22.49 0.15 1.80 16 4 C -0.14 -2.83 8.60 22.62 0.19 -2.64 16 5 C -0.11 -2.22 5.25 -20.10 -0.11 -2.33 16 6 C 0.56 14.95 7.36 86.75 0.64 15.59 16 7 O -0.58 -20.11 16.28 -3.93 -0.06 -20.18 16 8 N -0.60 -14.72 2.97 -822.44 -2.45 -17.17 16 9 C 0.12 3.40 6.43 86.36 0.56 3.95 16 10 C -0.11 -3.94 5.21 30.78 0.16 -3.78 16 11 C -0.07 -2.37 2.10 -10.66 -0.02 -2.39 16 12 C -0.01 -0.34 3.52 29.85 0.10 -0.24 16 13 C -0.52 -28.45 8.94 25.60 0.23 -28.22 16 14 H 0.04 2.35 7.30 -2.91 -0.02 2.33 16 15 C 0.00 0.05 5.47 84.66 0.46 0.51 16 16 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 17 Si 0.94 43.69 27.47 68.60 1.88 45.57 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 20 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 21 C -0.13 -3.14 5.36 30.67 0.16 -2.98 16 22 C 0.09 1.72 4.79 86.36 0.41 2.13 16 23 C -0.09 -1.23 7.35 22.53 0.17 -1.07 16 24 C -0.10 -1.29 10.00 22.25 0.22 -1.07 16 25 C 0.08 1.37 7.31 22.54 0.16 1.54 16 26 F -0.14 -2.75 17.10 44.97 0.77 -1.98 16 27 H 0.06 0.77 7.65 -2.39 -0.02 0.75 16 28 H 0.06 0.78 7.67 -2.39 -0.02 0.76 16 29 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.14 2.98 6.25 -2.91 -0.02 2.96 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.39 6.99 -2.39 -0.02 2.38 16 33 H 0.06 2.42 6.93 -2.39 -0.02 2.40 16 34 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.01 0.41 7.20 -2.38 -0.02 0.39 16 37 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.12 1.60 4.52 -2.39 -0.01 1.59 16 42 H 0.10 1.39 8.06 -2.38 -0.02 1.37 16 43 H 0.17 1.53 6.16 -2.91 -0.02 1.51 16 44 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -73.63 354.63 5.05 -68.58 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.96 Total: 9.50 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.61 Total: -17.87 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -2.15 Total: -76.18 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.03 Total: -27.62 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.77 Total: -1.98 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Total: -73.63 5.05 -68.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399346510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.165 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds