Wall clock time and date at job start Tue Mar 31 2020 13:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 116.99894 * 2 1 4 4 C 1.39097 * 119.88774 * 359.97438 * 3 2 1 5 5 C 1.37606 * 120.15916 * 179.76205 * 4 3 2 6 6 C 1.39811 * 119.93492 * 0.53094 * 5 4 3 7 7 C 1.47449 * 120.11204 * 179.73911 * 6 5 4 8 8 O 1.21607 * 119.99719 * 133.31129 * 7 6 5 9 9 N 1.34773 * 120.00415 * 313.31386 * 7 6 5 10 10 C 1.46928 * 120.62908 * 354.85481 * 9 7 6 11 11 C 1.53185 * 108.77406 * 233.58702 * 10 9 7 12 12 C 1.53048 * 109.31463 * 305.36490 * 11 10 9 13 13 C 1.53000 * 109.45958 * 181.38720 * 12 11 10 14 14 C 1.50705 * 109.47159 * 64.93295 * 13 12 11 15 15 H 1.08006 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99940 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99966 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.47291 * 90.00431 * 18 16 14 20 20 H 1.48508 * 109.47150 * 210.00558 * 18 16 14 21 21 H 1.48496 * 109.47031 * 330.00178 * 18 16 14 22 22 C 1.53035 * 109.53653 * 61.36839 * 12 11 10 23 23 C 1.46927 * 120.62947 * 174.83396 * 9 7 6 24 24 C 1.39995 * 119.77765 * 359.47001 * 6 5 4 25 25 F 1.35099 * 120.07754 * 180.23131 * 24 6 5 26 26 C 1.38057 * 119.83960 * 0.25205 * 24 6 5 27 27 H 1.09005 * 109.46892 * 299.99690 * 1 2 3 28 28 H 1.09001 * 109.47326 * 59.99598 * 1 2 3 29 29 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.92441 * 0.02562 * 4 3 2 31 31 H 1.08005 * 120.03417 * 180.24998 * 5 4 3 32 32 H 1.09002 * 109.58577 * 353.37828 * 10 9 7 33 33 H 1.08998 * 109.58520 * 113.79617 * 10 9 7 34 34 H 1.09000 * 109.50019 * 65.32068 * 11 10 9 35 35 H 1.09000 * 109.49821 * 185.41342 * 11 10 9 36 36 H 1.08998 * 109.45589 * 301.34858 * 12 11 10 37 37 H 1.08995 * 109.46945 * 184.93264 * 13 12 11 38 38 H 1.09003 * 109.47165 * 304.93278 * 13 12 11 39 39 H 0.97001 * 120.00329 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.49752 * 178.68967 * 22 12 11 41 41 H 1.08996 * 109.52566 * 58.60052 * 22 12 11 42 42 H 1.09006 * 109.58274 * 246.19925 * 23 9 7 43 43 H 1.08997 * 109.59016 * 6.48017 * 23 9 7 44 44 H 1.07996 * 119.97236 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2852 2.3743 -0.0005 5 6 1.9041 3.6034 0.0044 6 6 3.3000 3.6816 -0.0013 7 6 3.9672 4.9965 -0.0018 8 8 4.8897 5.2105 0.7611 9 7 3.5546 5.9613 -0.8477 10 6 2.5182 5.6837 -1.8515 11 6 3.0479 6.0862 -3.2313 12 6 3.5090 7.5450 -3.1908 13 6 4.0067 7.9609 -4.5765 14 6 2.8588 7.9310 -5.5524 15 1 1.8729 7.6436 -5.2179 16 6 3.0673 8.2695 -6.8726 17 7 2.0654 8.2439 -7.7241 18 14 4.7726 8.7659 -7.4514 19 1 5.5128 7.5602 -7.9022 20 1 4.6530 9.7240 -8.5797 21 1 5.5076 9.4084 -6.3324 22 6 4.6440 7.6949 -2.1752 23 6 4.1324 7.3106 -0.7832 24 6 4.0622 2.5074 -0.0007 25 9 5.4115 2.5759 -0.0014 26 6 3.4317 1.2792 0.0002 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2069 2.3142 -0.0005 31 1 1.3121 4.5067 0.0080 32 1 2.2809 4.6198 -1.8471 33 1 1.6227 6.2608 -1.6212 34 1 3.8886 5.4462 -3.4992 35 1 2.2556 5.9755 -3.9716 36 1 2.6740 8.1817 -2.8988 37 1 4.4160 8.9700 -4.5277 38 1 4.7823 7.2698 -4.9065 39 1 2.2122 8.4816 -8.6530 40 1 4.9876 8.7292 -2.1637 41 1 5.4700 7.0401 -2.4527 42 1 3.3684 8.0204 -0.4659 43 1 4.9585 7.3209 -0.0723 44 1 4.0176 0.3719 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399371063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:22 Heat of formation + Delta-G solvation = -97.121271 kcal Electronic energy + Delta-G solvation = -27196.849756 eV Core-core repulsion = 23221.802185 eV Total energy + Delta-G solvation = -3975.047571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.09942 -40.77187 -39.89530 -37.66685 -37.08656 -34.12238 -32.35614 -31.63102 -30.88604 -30.21315 -28.59231 -27.79551 -25.05243 -23.60966 -23.26205 -22.58532 -21.46076 -20.06298 -19.16275 -18.69084 -17.53268 -17.17058 -16.74358 -16.37662 -16.28690 -16.00933 -15.57408 -15.22628 -14.89724 -14.52034 -14.40254 -14.14262 -13.69302 -13.50184 -13.25713 -13.09717 -12.99288 -12.76549 -12.70550 -12.51215 -12.30226 -12.10551 -11.50807 -11.45560 -11.33395 -11.15001 -10.89340 -10.67444 -10.35805 -9.94283 -9.89105 -9.67830 -9.51407 -9.23422 -9.08161 -8.69410 -8.55480 -8.42585 -6.06691 -4.04055 0.59781 0.79036 2.59693 2.66000 2.97502 3.29725 3.32518 3.37607 3.41386 3.99906 4.26455 4.36332 4.43875 4.51739 4.66508 4.73158 4.85942 4.94225 5.07107 5.07793 5.25686 5.27142 5.36434 5.41616 5.51612 5.58248 5.59689 5.68977 5.74760 5.80610 5.88520 5.98769 6.20984 6.25781 6.28474 6.41118 6.59032 6.77367 6.83144 6.83421 6.93656 7.25085 7.40228 7.45874 7.77769 8.15951 8.50858 8.97384 9.56788 11.06447 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003229 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.497523 B = 8670.185217 C = 9621.668741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.310 6.310 3 C 0.177 3.823 4 C -0.225 4.225 5 C -0.016 4.016 6 C -0.199 4.199 7 C 0.563 3.437 8 O -0.537 6.537 9 N -0.598 5.598 10 C 0.097 3.903 11 C -0.121 4.121 12 C -0.072 4.072 13 C -0.010 4.010 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.133 4.133 23 C 0.113 3.887 24 C 0.191 3.809 25 F -0.117 7.117 26 C -0.198 4.198 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -13.862 17.336 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.130 3.870 4 C -0.243 4.243 5 C -0.034 4.034 6 C -0.203 4.203 7 C 0.351 3.649 8 O -0.415 6.415 9 N -0.330 5.330 10 C -0.025 4.025 11 C -0.159 4.159 12 C -0.090 4.090 13 C -0.047 4.047 14 C -0.554 4.554 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.171 4.171 23 C -0.009 4.009 24 C 0.170 3.830 25 F -0.095 7.095 26 C -0.218 4.218 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.485 -13.887 17.546 22.647 hybrid contribution 0.767 0.389 -0.651 1.078 sum -2.719 -13.499 16.896 21.796 Atomic orbital electron populations 1.23193 0.77424 1.04520 1.01976 1.86049 1.22148 1.26372 1.87643 1.18784 0.91301 0.84570 0.92301 1.21228 1.00836 0.91603 1.10681 1.21008 0.91970 0.98244 0.92227 1.19871 0.94446 0.93063 1.12932 1.17928 0.82768 0.83486 0.80732 1.90793 1.28745 1.81095 1.40877 1.48067 1.40098 1.11199 1.33685 1.22163 0.90031 1.01326 0.88949 1.21919 1.02162 0.97295 0.94477 1.21010 0.96482 0.95406 0.96148 1.19620 0.97037 0.95913 0.92116 1.21126 0.95870 1.45644 0.92736 0.90857 1.25018 0.96560 0.95025 0.96869 1.69906 1.31061 1.49387 1.03985 0.86816 0.85393 0.78798 0.78503 1.20390 1.21488 1.19042 1.22064 0.99465 1.01544 0.94000 1.21687 0.98775 0.81591 0.98800 1.17147 0.77190 0.92203 0.96443 1.91586 1.28080 1.97031 1.92788 1.20146 0.92551 0.97484 1.11591 0.92156 0.91903 0.87801 0.84020 0.83825 0.89949 0.91156 0.92300 0.89073 0.91655 0.96565 0.97115 0.92796 0.90999 0.91988 0.91443 0.89445 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.63 10.48 -18.86 -0.20 -2.83 16 3 C 0.18 1.69 6.69 -39.04 -0.26 1.43 16 4 C -0.22 -1.88 9.01 -39.49 -0.36 -2.24 16 5 C -0.02 -0.16 7.47 -39.22 -0.29 -0.45 16 6 C -0.20 -2.61 4.91 -104.90 -0.52 -3.12 16 7 C 0.56 8.84 7.04 -12.51 -0.09 8.75 16 8 O -0.54 -10.16 15.95 5.27 0.08 -10.08 16 9 N -0.60 -8.69 2.97 -174.02 -0.52 -9.20 16 10 C 0.10 1.29 5.15 -3.71 -0.02 1.27 16 11 C -0.12 -2.03 5.19 -26.61 -0.14 -2.16 16 12 C -0.07 -1.31 2.10 -90.58 -0.19 -1.50 16 13 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 14 C -0.52 -13.93 8.94 -34.44 -0.31 -14.24 16 15 H 0.07 2.09 7.30 -52.48 -0.38 1.71 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 18 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 C -0.13 -2.11 5.36 -26.61 -0.14 -2.25 16 23 C 0.11 1.63 6.44 -3.71 -0.02 1.60 16 24 C 0.19 2.52 7.25 -38.99 -0.28 2.23 16 25 F -0.12 -1.77 16.43 2.25 0.04 -1.74 16 26 C -0.20 -2.14 9.95 -39.43 -0.39 -2.53 16 27 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 28 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 0.78 6.27 -52.49 -0.33 0.45 16 31 H 0.14 1.17 7.16 -52.48 -0.38 0.79 16 32 H 0.08 0.97 5.02 -51.93 -0.26 0.71 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.67 6.91 -51.93 -0.36 1.32 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 44 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -33.23 355.38 -7.53 -40.76 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.18 Total: -2.05 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.21 Total: -10.64 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.26 Total: -35.63 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.11 Total: -12.91 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.23 -7.53 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399371063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.359 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds