Wall clock time and date at job start Tue Mar 31 2020 13:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 116.99894 * 2 1 4 4 C 1.39097 * 119.88774 * 359.97438 * 3 2 1 5 5 C 1.37606 * 120.15916 * 179.76205 * 4 3 2 6 6 C 1.39811 * 119.93492 * 0.53094 * 5 4 3 7 7 C 1.47449 * 120.11204 * 179.73911 * 6 5 4 8 8 O 1.21607 * 119.99719 * 133.31129 * 7 6 5 9 9 N 1.34773 * 120.00415 * 313.31386 * 7 6 5 10 10 C 1.46928 * 120.62908 * 354.85481 * 9 7 6 11 11 C 1.53185 * 108.77406 * 233.58702 * 10 9 7 12 12 C 1.53048 * 109.31463 * 305.36490 * 11 10 9 13 13 C 1.53000 * 109.45958 * 181.38720 * 12 11 10 14 14 C 1.50705 * 109.47159 * 64.93295 * 13 12 11 15 15 H 1.08006 * 119.99960 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99940 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99966 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.47291 * 90.00431 * 18 16 14 20 20 H 1.48508 * 109.47150 * 210.00558 * 18 16 14 21 21 H 1.48496 * 109.47031 * 330.00178 * 18 16 14 22 22 C 1.53035 * 109.53653 * 61.36839 * 12 11 10 23 23 C 1.46927 * 120.62947 * 174.83396 * 9 7 6 24 24 C 1.39995 * 119.77765 * 359.47001 * 6 5 4 25 25 F 1.35099 * 120.07754 * 180.23131 * 24 6 5 26 26 C 1.38057 * 119.83960 * 0.25205 * 24 6 5 27 27 H 1.09005 * 109.46892 * 299.99690 * 1 2 3 28 28 H 1.09001 * 109.47326 * 59.99598 * 1 2 3 29 29 H 1.09002 * 109.47290 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.92441 * 0.02562 * 4 3 2 31 31 H 1.08005 * 120.03417 * 180.24998 * 5 4 3 32 32 H 1.09002 * 109.58577 * 353.37828 * 10 9 7 33 33 H 1.08998 * 109.58520 * 113.79617 * 10 9 7 34 34 H 1.09000 * 109.50019 * 65.32068 * 11 10 9 35 35 H 1.09000 * 109.49821 * 185.41342 * 11 10 9 36 36 H 1.08998 * 109.45589 * 301.34858 * 12 11 10 37 37 H 1.08995 * 109.46945 * 184.93264 * 13 12 11 38 38 H 1.09003 * 109.47165 * 304.93278 * 13 12 11 39 39 H 0.97001 * 120.00329 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.49752 * 178.68967 * 22 12 11 41 41 H 1.08996 * 109.52566 * 58.60052 * 22 12 11 42 42 H 1.09006 * 109.58274 * 246.19925 * 23 9 7 43 43 H 1.08997 * 109.59016 * 6.48017 * 23 9 7 44 44 H 1.07996 * 119.97236 * 180.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2852 2.3743 -0.0005 5 6 1.9041 3.6034 0.0044 6 6 3.3000 3.6816 -0.0013 7 6 3.9672 4.9965 -0.0018 8 8 4.8897 5.2105 0.7611 9 7 3.5546 5.9613 -0.8477 10 6 2.5182 5.6837 -1.8515 11 6 3.0479 6.0862 -3.2313 12 6 3.5090 7.5450 -3.1908 13 6 4.0067 7.9609 -4.5765 14 6 2.8588 7.9310 -5.5524 15 1 1.8729 7.6436 -5.2179 16 6 3.0673 8.2695 -6.8726 17 7 2.0654 8.2439 -7.7241 18 14 4.7726 8.7659 -7.4514 19 1 5.5128 7.5602 -7.9022 20 1 4.6530 9.7240 -8.5797 21 1 5.5076 9.4084 -6.3324 22 6 4.6440 7.6949 -2.1752 23 6 4.1324 7.3106 -0.7832 24 6 4.0622 2.5074 -0.0007 25 9 5.4115 2.5759 -0.0014 26 6 3.4317 1.2792 0.0002 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2069 2.3142 -0.0005 31 1 1.3121 4.5067 0.0080 32 1 2.2809 4.6198 -1.8471 33 1 1.6227 6.2608 -1.6212 34 1 3.8886 5.4462 -3.4992 35 1 2.2556 5.9755 -3.9716 36 1 2.6740 8.1817 -2.8988 37 1 4.4160 8.9700 -4.5277 38 1 4.7823 7.2698 -4.9065 39 1 2.2122 8.4816 -8.6530 40 1 4.9876 8.7292 -2.1637 41 1 5.4700 7.0401 -2.4527 42 1 3.3684 8.0204 -0.4659 43 1 4.9585 7.3209 -0.0723 44 1 4.0176 0.3719 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399371063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:21 Heat of formation + Delta-G solvation = -117.298225 kcal Electronic energy + Delta-G solvation = -27197.724695 eV Core-core repulsion = 23221.802185 eV Total energy + Delta-G solvation = -3975.922509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.12765 -41.70007 -40.81141 -38.84636 -38.03771 -35.71483 -34.14764 -32.72012 -31.84477 -31.19441 -30.20646 -28.32440 -26.47794 -24.64481 -24.40999 -23.64262 -22.84062 -21.41518 -20.36488 -19.47250 -18.87526 -18.49994 -18.07862 -17.30448 -17.13604 -16.89790 -16.46547 -16.38600 -16.06195 -15.95586 -15.45509 -15.37019 -15.04112 -14.84914 -14.64635 -14.24256 -14.15399 -13.96327 -13.63902 -13.55681 -13.35957 -13.17300 -13.08854 -12.84761 -12.43280 -12.22343 -12.06220 -11.99575 -11.92901 -11.72418 -11.40562 -11.25823 -10.96269 -10.89535 -10.71693 -10.05599 -9.73351 -9.40236 -8.24928 -6.25614 -0.26133 0.01002 1.35093 1.37441 1.47743 1.50514 1.90613 2.07652 2.37738 2.44101 3.10983 3.16338 3.34412 3.56780 3.84808 3.88623 3.98130 4.06454 4.09123 4.13854 4.19350 4.38318 4.42165 4.46660 4.51172 4.61230 4.71597 4.78423 4.79638 4.85307 4.86480 4.93123 5.00062 5.05324 5.08241 5.16396 5.23626 5.34442 5.40140 5.44356 5.58897 5.72283 5.74283 6.22074 6.29576 6.35343 6.81495 6.99686 7.38261 8.90941 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003229 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.497523 B = 8670.185217 C = 9621.668741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.182 3.818 4 C -0.210 4.210 5 C -0.011 4.011 6 C -0.222 4.222 7 C 0.561 3.439 8 O -0.579 6.579 9 N -0.597 5.597 10 C 0.107 3.893 11 C -0.117 4.117 12 C -0.068 4.068 13 C -0.009 4.009 14 C -0.513 4.513 15 H 0.047 0.953 16 C 0.007 3.993 17 N -0.949 5.949 18 Si 0.937 3.063 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.251 1.251 22 C -0.124 4.124 23 C 0.116 3.884 24 C 0.164 3.836 25 F -0.139 7.139 26 C -0.203 4.203 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.179 0.821 31 H 0.166 0.834 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.016 0.984 38 H 0.006 0.994 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -14.400 18.516 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.135 3.865 4 C -0.228 4.228 5 C -0.029 4.029 6 C -0.226 4.226 7 C 0.350 3.650 8 O -0.460 6.460 9 N -0.328 5.328 10 C -0.015 4.015 11 C -0.156 4.156 12 C -0.087 4.087 13 C -0.046 4.046 14 C -0.551 4.551 15 H 0.066 0.934 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.762 3.238 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.174 1.174 22 C -0.162 4.162 23 C -0.006 4.006 24 C 0.144 3.856 25 F -0.117 7.117 26 C -0.223 4.223 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.139 0.861 30 H 0.196 0.804 31 H 0.184 0.816 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.034 0.966 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.775 -14.431 18.731 24.123 hybrid contribution 1.014 0.442 -1.015 1.502 sum -3.761 -13.989 17.716 22.884 Atomic orbital electron populations 1.23557 0.75182 1.06286 1.03257 1.86056 1.24436 1.25799 1.87099 1.18889 0.90938 0.85586 0.91127 1.21591 1.02502 0.90341 1.08372 1.21257 0.90531 0.99835 0.91272 1.19828 0.95823 0.91515 1.15401 1.18341 0.82195 0.84312 0.80111 1.90760 1.30666 1.81913 1.42646 1.48134 1.40099 1.11109 1.33488 1.22169 0.90100 1.02940 0.86269 1.21812 1.01055 0.96217 0.96473 1.20924 0.97331 0.96238 0.94171 1.19592 0.95366 0.95831 0.93801 1.21448 0.96140 1.43981 0.93498 0.93443 1.25859 1.00285 0.95546 0.97308 1.70039 1.33294 1.51326 1.04412 0.85852 0.80938 0.78625 0.78387 1.19958 1.21256 1.17443 1.21956 0.98011 1.02080 0.94184 1.21682 0.99417 0.82131 0.97391 1.17456 0.76482 0.93340 0.98347 1.91521 1.29746 1.97197 1.93271 1.20249 0.93619 0.96885 1.11506 0.90555 0.90794 0.86066 0.80403 0.81627 0.88144 0.88552 0.93748 0.90977 0.91331 0.96571 0.97589 0.92777 0.89800 0.93342 0.89069 0.90061 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -4.56 10.48 -90.39 -0.95 -5.51 16 3 C 0.18 3.03 6.69 22.62 0.15 3.18 16 4 C -0.21 -2.75 9.01 22.33 0.20 -2.54 16 5 C -0.01 -0.18 7.47 22.50 0.17 -0.01 16 6 C -0.22 -5.60 4.91 -20.04 -0.10 -5.70 16 7 C 0.56 17.34 7.04 86.67 0.61 17.95 16 8 O -0.58 -22.24 15.95 -4.05 -0.06 -22.30 16 9 N -0.60 -16.47 2.97 -822.74 -2.45 -18.92 16 10 C 0.11 2.60 5.15 86.36 0.44 3.05 16 11 C -0.12 -3.87 5.19 30.67 0.16 -3.71 16 12 C -0.07 -2.42 2.10 -10.77 -0.02 -2.44 16 13 C -0.01 -0.38 3.52 29.85 0.10 -0.28 16 14 C -0.51 -27.92 8.94 25.60 0.23 -27.69 16 15 H 0.05 2.77 7.30 -2.91 -0.02 2.74 16 16 C 0.01 0.38 5.47 84.65 0.46 0.84 16 17 N -0.95 -58.07 13.96 21.45 0.30 -57.77 16 18 Si 0.94 44.23 27.47 68.60 1.88 46.12 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 22 C -0.12 -3.79 5.36 30.67 0.16 -3.62 16 23 C 0.12 3.13 6.44 86.36 0.56 3.69 16 24 C 0.16 4.35 7.25 22.65 0.16 4.52 16 25 F -0.14 -4.43 16.43 44.97 0.74 -3.69 16 26 C -0.20 -4.24 9.95 22.37 0.22 -4.02 16 27 H 0.08 0.20 7.65 -2.38 -0.02 0.19 16 28 H 0.07 0.27 7.65 -2.39 -0.02 0.25 16 29 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.18 1.01 6.27 -2.91 -0.02 1.00 16 31 H 0.17 2.02 7.16 -2.91 -0.02 2.00 16 32 H 0.10 2.12 5.02 -2.39 -0.01 2.11 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 2.65 6.91 -2.39 -0.02 2.64 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 38 H 0.01 0.27 7.57 -2.39 -0.02 0.25 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.08 2.36 6.99 -2.39 -0.02 2.34 16 44 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -74.31 355.38 5.05 -69.26 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.96 Total: 8.44 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 4.63 Total: -15.62 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.15 Total: -76.69 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.01 Total: -27.81 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.74 Total: -3.69 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -74.31 5.05 -69.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399371063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.043 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds