Wall clock time and date at job start Tue Mar 31 2020 12:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21257 * 120.00142 * 2 1 4 4 C 1.47162 * 120.00099 * 179.97438 * 2 1 3 5 5 C 1.39869 * 120.18497 * 0.02562 * 4 2 1 6 6 C 1.37847 * 119.83014 * 180.02562 * 5 4 2 7 7 C 1.38399 * 120.25836 * 0.03068 * 6 5 4 8 8 C 1.38657 * 120.24236 * 359.96560 * 7 6 5 9 9 C 1.37849 * 120.14209 * 0.23766 * 8 7 6 10 10 C 1.51221 * 108.22975 * 179.97438 * 8 7 6 11 11 N 1.48039 * 105.67332 * 17.54208 * 10 8 7 12 12 C 1.46901 * 111.00122 * 91.69249 * 11 10 8 13 13 C 1.50707 * 109.47200 * 169.99857 * 12 11 10 14 14 C 1.38631 * 119.74752 * 269.72829 * 13 12 11 15 15 C 1.37619 * 120.24806 * 179.72293 * 14 13 12 16 16 C 1.40716 * 119.74075 * 0.52292 * 15 14 13 17 17 C 1.41394 * 120.24169 * 179.72843 * 16 15 14 18 18 H 1.07996 * 120.00556 * 24.40888 * 17 16 15 19 19 C 1.39948 * 119.99595 * 204.40406 * 17 16 15 20 20 N 1.30816 * 120.00592 * 17.87004 * 19 17 16 21 21 Si 1.86809 * 119.99797 * 197.86500 * 19 17 16 22 22 H 1.48494 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47123 * 120.00417 * 21 19 17 24 24 H 1.48498 * 109.47189 * 240.00158 * 21 19 17 25 25 C 1.40715 * 119.51296 * 359.74999 * 16 15 14 26 26 C 1.37613 * 119.74783 * 359.97438 * 25 16 15 27 27 C 1.48038 * 103.91790 * 332.31330 * 11 10 8 28 28 H 1.08997 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47264 * 300.00232 * 1 2 3 30 30 H 1.08999 * 109.47007 * 60.00221 * 1 2 3 31 31 H 1.08006 * 120.08335 * 359.97438 * 5 4 2 32 32 H 1.08006 * 119.87167 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.05238 * 179.69302 * 9 8 7 34 34 H 1.08992 * 110.20227 * 136.58858 * 10 8 7 35 35 H 1.08997 * 110.20670 * 258.41073 * 10 8 7 36 36 H 1.09004 * 109.47136 * 289.99875 * 12 11 10 37 37 H 1.09000 * 109.47334 * 49.99691 * 12 11 10 38 38 H 1.08001 * 119.87636 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.13140 * 180.28293 * 15 14 13 40 40 H 0.96993 * 120.00628 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.12838 * 179.97438 * 25 16 15 42 42 H 1.08000 * 119.88136 * 179.97438 * 26 25 16 43 43 H 1.08997 * 110.20282 * 146.74656 * 27 11 10 44 44 H 1.09003 * 110.20112 * 268.55912 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 1.5474 -2.4880 0.0006 6 6 2.2440 -3.6775 0.0016 7 6 3.6280 -3.6751 0.0034 8 6 4.3243 -2.4761 0.0033 9 6 3.6411 -1.2789 0.0065 10 6 5.8040 -2.7883 0.0060 11 7 5.9154 -4.2011 -0.4220 12 6 6.0827 -4.2984 -1.8782 13 6 6.4366 -5.7155 -2.2497 14 6 7.7673 -6.0995 -2.3078 15 6 8.1019 -7.3923 -2.6403 16 6 7.0875 -8.3227 -2.9326 17 6 7.4195 -9.6522 -3.2810 18 1 8.3591 -10.0764 -2.9590 19 6 6.5305 -10.4186 -4.0431 20 7 5.5785 -9.8329 -4.7229 21 14 6.7032 -12.2781 -4.0898 22 1 7.8503 -12.6901 -3.2416 23 1 5.4583 -12.9039 -3.5762 24 1 6.9378 -12.7184 -5.4885 25 6 5.7404 -7.9202 -2.8759 26 6 5.4289 -6.6237 -2.5356 27 6 4.6334 -4.8050 0.0062 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.4673 -2.4931 0.0006 32 1 1.7077 -4.6150 0.0012 33 1 4.1849 -0.3458 0.0114 34 1 6.3268 -2.1397 -0.6967 35 1 6.2131 -2.6640 1.0086 36 1 5.1524 -4.0152 -2.3706 37 1 6.8813 -3.6288 -2.1977 38 1 8.5443 -5.3824 -2.0873 39 1 9.1391 -7.6906 -2.6806 40 1 4.9626 -10.3640 -5.2514 41 1 4.9539 -8.6260 -3.0987 42 1 4.3957 -6.3123 -2.4919 43 1 4.3297 -5.5810 -0.6964 44 1 4.7300 -5.2221 1.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411938528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:50 Heat of formation + Delta-G solvation = 19.127473 kcal Electronic energy + Delta-G solvation = -25286.164299 eV Core-core repulsion = 21746.926877 eV Total energy + Delta-G solvation = -3539.237422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79558 -39.40970 -37.73665 -36.47400 -33.85784 -32.11662 -31.68494 -30.63020 -29.42133 -29.06371 -27.66455 -26.82292 -24.32374 -23.02807 -22.23416 -21.34780 -20.83927 -19.78744 -19.53044 -17.32219 -17.07146 -16.22636 -15.78243 -15.42158 -15.26825 -15.16800 -14.98663 -14.38719 -14.06414 -13.88531 -13.80518 -13.54810 -13.35192 -13.10257 -12.63103 -12.48060 -12.42149 -12.18858 -12.00557 -11.92430 -11.62286 -11.51470 -11.34088 -11.05690 -10.99024 -10.90937 -10.57038 -10.39384 -10.03052 -9.60648 -9.40845 -9.15372 -9.06893 -8.78157 -8.41930 -7.46951 -7.31568 -6.78788 -4.36596 0.43017 1.16508 2.15987 2.70141 3.04863 3.06960 3.10735 3.14709 3.54832 3.71464 3.91237 4.17540 4.30983 4.56328 4.66649 4.70706 4.76220 4.86503 5.05944 5.14561 5.31306 5.32699 5.41147 5.54057 5.60475 5.70335 5.74513 5.80393 5.83618 5.91513 5.99852 6.05577 6.11367 6.22247 6.33768 6.35181 6.41071 6.66792 6.89512 6.97936 7.05925 7.21762 7.24920 7.29050 7.36438 7.59827 7.85949 8.04083 8.10997 8.28631 8.62265 8.88119 8.96045 10.15775 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.002438 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.191188 B =11480.350794 C =12225.349085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.398 3.602 3 O -0.464 6.464 4 C -0.181 4.181 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.079 4.079 8 C -0.138 4.138 9 C -0.042 4.042 10 C 0.074 3.926 11 N -0.490 5.490 12 C 0.106 3.894 13 C -0.208 4.208 14 C -0.069 4.069 15 C -0.227 4.227 16 C 0.112 3.888 17 C -0.462 4.462 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.793 5.793 21 Si 0.906 3.094 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.165 4.165 26 C -0.095 4.095 27 C 0.067 3.933 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.280 0.720 41 H 0.117 0.883 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 12.141 8.357 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.277 3.723 3 O -0.340 6.340 4 C -0.182 4.182 5 C -0.091 4.091 6 C -0.134 4.134 7 C -0.081 4.081 8 C -0.139 4.139 9 C -0.060 4.060 10 C -0.055 4.055 11 N -0.210 5.210 12 C -0.020 4.020 13 C -0.209 4.209 14 C -0.088 4.088 15 C -0.247 4.247 16 C 0.110 3.890 17 C -0.491 4.491 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.418 5.418 21 Si 0.731 3.269 22 H -0.184 1.184 23 H -0.197 1.197 24 H -0.200 1.200 25 C -0.185 4.185 26 C -0.114 4.114 27 C -0.061 4.061 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.160 12.357 8.397 17.524 hybrid contribution -0.843 -0.540 -0.569 1.151 sum -10.002 11.817 7.828 17.348 Atomic orbital electron populations 1.22237 0.93821 1.04880 1.04909 1.22467 0.91621 0.87551 0.70629 1.90533 1.72129 1.34405 1.36969 1.20368 0.94218 0.94768 1.08846 1.21408 0.99879 0.91228 0.96581 1.20542 0.92692 0.98448 1.01740 1.21775 0.94576 0.97066 0.94689 1.21332 0.98040 0.93249 1.01314 1.20695 0.92732 0.97525 0.95093 1.21877 0.90116 0.91043 1.02421 1.65340 1.30526 1.09633 1.15544 1.21012 0.99041 0.96376 0.85583 1.18761 0.93588 0.93933 1.14646 1.20321 0.94291 0.95415 0.98739 1.20970 0.97541 0.93536 1.12626 1.17631 0.91258 0.92380 0.87772 1.19636 1.03735 0.96861 1.28887 0.90418 1.25913 0.94005 1.01030 0.93225 1.69829 1.14000 1.37778 1.20239 0.86297 0.79461 0.82393 0.78797 1.18374 1.19715 1.20019 1.21267 0.96992 0.95024 1.05184 1.20491 0.95809 0.94377 1.00678 1.21999 0.85733 0.95263 1.03134 0.89722 0.88788 0.88760 0.84697 0.85192 0.85164 0.90180 0.88669 0.95225 0.91375 0.89467 0.89071 0.90961 0.86545 0.89974 0.88333 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.26 10.19 36.00 0.37 -0.89 16 2 C 0.40 4.15 7.23 -30.69 -0.22 3.93 16 3 O -0.46 -6.37 17.09 5.58 0.10 -6.28 16 4 C -0.18 -2.00 5.87 -105.07 -0.62 -2.62 16 5 C -0.07 -0.69 9.45 -39.11 -0.37 -1.06 16 6 C -0.12 -1.26 10.02 -39.67 -0.40 -1.66 16 7 C -0.08 -1.03 6.12 -104.14 -0.64 -1.66 16 8 C -0.14 -1.77 6.19 -104.35 -0.65 -2.42 16 9 C -0.04 -0.51 9.59 -39.13 -0.38 -0.89 16 10 C 0.07 0.94 6.65 -4.09 -0.03 0.92 16 11 N -0.49 -7.62 5.45 -236.32 -1.29 -8.90 16 12 C 0.11 1.84 4.84 -4.97 -0.02 1.81 16 13 C -0.21 -4.35 5.22 -104.33 -0.54 -4.90 16 14 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 15 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 16 C 0.11 2.95 5.58 -106.83 -0.60 2.35 16 17 C -0.46 -12.11 9.05 -37.74 -0.34 -12.46 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 20 N -0.79 -20.20 10.95 55.55 0.61 -19.59 16 21 Si 0.91 18.40 29.60 -169.99 -5.03 13.37 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 26 C -0.09 -2.11 8.41 -39.66 -0.33 -2.45 16 27 C 0.07 0.96 6.41 -4.08 -0.03 0.93 16 28 H 0.08 0.37 5.61 -51.93 -0.29 0.08 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 0.83 5.93 -52.48 -0.31 0.52 16 32 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 33 H 0.13 1.55 7.65 -52.49 -0.40 1.14 16 34 H 0.08 0.96 7.60 -51.93 -0.39 0.57 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.51 7.86 -51.93 -0.41 0.11 16 37 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 38 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 41 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 42 H 0.08 1.66 7.08 -52.49 -0.37 1.29 16 43 H 0.10 1.57 5.21 -51.93 -0.27 1.30 16 44 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -29.07 362.30 -11.82 -40.89 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.68 Total: 6.64 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -5.98 Total: -31.59 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: -0.68 Total: -28.49 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: 0.10 Total: -6.28 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.07 -11.82 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411938528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.017 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds