Wall clock time and date at job start Tue Mar 31 2020 12:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21257 * 120.00142 * 2 1 4 4 C 1.47162 * 120.00099 * 179.97438 * 2 1 3 5 5 C 1.39869 * 120.18497 * 0.02562 * 4 2 1 6 6 C 1.37847 * 119.83014 * 180.02562 * 5 4 2 7 7 C 1.38399 * 120.25836 * 0.03068 * 6 5 4 8 8 C 1.38657 * 120.24236 * 359.96560 * 7 6 5 9 9 C 1.37849 * 120.14209 * 0.23766 * 8 7 6 10 10 C 1.51221 * 108.22975 * 179.97438 * 8 7 6 11 11 N 1.48039 * 105.67332 * 17.54208 * 10 8 7 12 12 C 1.46901 * 111.00122 * 91.69249 * 11 10 8 13 13 C 1.50707 * 109.47200 * 169.99857 * 12 11 10 14 14 C 1.38631 * 119.74752 * 269.72829 * 13 12 11 15 15 C 1.37619 * 120.24806 * 179.72293 * 14 13 12 16 16 C 1.40716 * 119.74075 * 0.52292 * 15 14 13 17 17 C 1.41394 * 120.24169 * 179.72843 * 16 15 14 18 18 H 1.07996 * 120.00556 * 24.40888 * 17 16 15 19 19 C 1.39948 * 119.99595 * 204.40406 * 17 16 15 20 20 N 1.30816 * 120.00592 * 17.87004 * 19 17 16 21 21 Si 1.86809 * 119.99797 * 197.86500 * 19 17 16 22 22 H 1.48494 * 109.47061 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47123 * 120.00417 * 21 19 17 24 24 H 1.48498 * 109.47189 * 240.00158 * 21 19 17 25 25 C 1.40715 * 119.51296 * 359.74999 * 16 15 14 26 26 C 1.37613 * 119.74783 * 359.97438 * 25 16 15 27 27 C 1.48038 * 103.91790 * 332.31330 * 11 10 8 28 28 H 1.08997 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47264 * 300.00232 * 1 2 3 30 30 H 1.08999 * 109.47007 * 60.00221 * 1 2 3 31 31 H 1.08006 * 120.08335 * 359.97438 * 5 4 2 32 32 H 1.08006 * 119.87167 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.05238 * 179.69302 * 9 8 7 34 34 H 1.08992 * 110.20227 * 136.58858 * 10 8 7 35 35 H 1.08997 * 110.20670 * 258.41073 * 10 8 7 36 36 H 1.09004 * 109.47136 * 289.99875 * 12 11 10 37 37 H 1.09000 * 109.47334 * 49.99691 * 12 11 10 38 38 H 1.08001 * 119.87636 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.13140 * 180.28293 * 15 14 13 40 40 H 0.96993 * 120.00628 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.12838 * 179.97438 * 25 16 15 42 42 H 1.08000 * 119.88136 * 179.97438 * 26 25 16 43 43 H 1.08997 * 110.20282 * 146.74656 * 27 11 10 44 44 H 1.09003 * 110.20112 * 268.55912 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 1.5474 -2.4880 0.0006 6 6 2.2440 -3.6775 0.0016 7 6 3.6280 -3.6751 0.0034 8 6 4.3243 -2.4761 0.0033 9 6 3.6411 -1.2789 0.0065 10 6 5.8040 -2.7883 0.0060 11 7 5.9154 -4.2011 -0.4220 12 6 6.0827 -4.2984 -1.8782 13 6 6.4366 -5.7155 -2.2497 14 6 7.7673 -6.0995 -2.3078 15 6 8.1019 -7.3923 -2.6403 16 6 7.0875 -8.3227 -2.9326 17 6 7.4195 -9.6522 -3.2810 18 1 8.3591 -10.0764 -2.9590 19 6 6.5305 -10.4186 -4.0431 20 7 5.5785 -9.8329 -4.7229 21 14 6.7032 -12.2781 -4.0898 22 1 7.8503 -12.6901 -3.2416 23 1 5.4583 -12.9039 -3.5762 24 1 6.9378 -12.7184 -5.4885 25 6 5.7404 -7.9202 -2.8759 26 6 5.4289 -6.6237 -2.5356 27 6 4.6334 -4.8050 0.0062 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.4673 -2.4931 0.0006 32 1 1.7077 -4.6150 0.0012 33 1 4.1849 -0.3458 0.0114 34 1 6.3268 -2.1397 -0.6967 35 1 6.2131 -2.6640 1.0086 36 1 5.1524 -4.0152 -2.3706 37 1 6.8813 -3.6288 -2.1977 38 1 8.5443 -5.3824 -2.0873 39 1 9.1391 -7.6906 -2.6806 40 1 4.9626 -10.3640 -5.2514 41 1 4.9539 -8.6260 -3.0987 42 1 4.3957 -6.3123 -2.4919 43 1 4.3297 -5.5810 -0.6964 44 1 4.7300 -5.2221 1.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411938528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:49 Heat of formation + Delta-G solvation = 4.488666 kcal Electronic energy + Delta-G solvation = -25286.799086 eV Core-core repulsion = 21746.926877 eV Total energy + Delta-G solvation = -3539.872209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.76433 -40.37298 -39.36963 -37.63468 -35.62547 -33.31632 -32.59631 -31.87618 -31.18127 -30.23009 -28.67253 -28.29692 -25.83170 -24.03783 -23.32835 -22.82699 -22.30093 -21.42735 -20.37102 -19.20749 -17.89818 -17.23810 -17.19412 -16.75893 -16.46804 -16.01825 -15.95165 -15.80394 -15.61181 -15.32466 -14.78848 -14.65971 -14.58622 -14.26055 -14.10995 -13.81560 -13.48646 -13.22485 -13.20270 -12.98638 -12.93544 -12.90136 -12.65811 -12.56509 -12.42274 -12.34388 -12.02163 -11.87002 -11.37851 -11.22724 -10.99292 -10.84722 -9.95039 -9.77686 -9.59969 -9.32163 -9.16386 -8.62890 -6.31339 -0.43506 0.30031 0.94732 1.17947 1.33756 1.38593 1.49644 1.53739 2.21611 2.67106 2.68735 2.95807 3.10920 3.43446 3.62414 3.81632 3.90446 4.02678 4.14664 4.19343 4.22335 4.35610 4.37037 4.47299 4.58509 4.64337 4.66044 4.67701 4.74391 4.77949 4.86742 4.89103 5.00021 5.03860 5.06534 5.18180 5.21609 5.33002 5.37174 5.43500 5.49622 5.71910 5.78849 5.83225 5.93539 6.07504 6.13038 6.28362 6.41879 6.48391 6.72466 6.96630 7.06225 8.34303 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.002438 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.191188 B =11480.350794 C =12225.349085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.399 3.601 3 O -0.506 6.506 4 C -0.190 4.190 5 C -0.058 4.058 6 C -0.120 4.120 7 C -0.095 4.095 8 C -0.147 4.147 9 C -0.056 4.056 10 C 0.076 3.924 11 N -0.502 5.502 12 C 0.115 3.885 13 C -0.193 4.193 14 C -0.073 4.073 15 C -0.244 4.244 16 C 0.079 3.921 17 C -0.501 4.501 18 H 0.072 0.928 19 C 0.036 3.964 20 N -0.825 5.825 21 Si 0.980 3.020 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.266 1.266 25 C -0.188 4.188 26 C -0.093 4.093 27 C 0.068 3.932 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.176 0.824 32 H 0.149 0.851 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.029 0.971 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.287 0.713 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 12.925 9.055 19.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.280 3.720 3 O -0.385 6.385 4 C -0.191 4.191 5 C -0.076 4.076 6 C -0.138 4.138 7 C -0.097 4.097 8 C -0.149 4.149 9 C -0.075 4.075 10 C -0.052 4.052 11 N -0.223 5.223 12 C -0.012 4.012 13 C -0.195 4.195 14 C -0.092 4.092 15 C -0.264 4.264 16 C 0.077 3.923 17 C -0.531 4.531 18 H 0.090 0.910 19 C -0.179 4.179 20 N -0.452 5.452 21 Si 0.801 3.199 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.191 1.191 25 C -0.207 4.207 26 C -0.112 4.112 27 C -0.060 4.060 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.193 0.807 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.091 13.150 9.104 19.464 hybrid contribution -0.291 -0.599 -0.717 0.978 sum -11.382 12.551 8.387 18.906 Atomic orbital electron populations 1.22283 0.90107 1.06848 1.05970 1.23067 0.93540 0.86474 0.68889 1.90526 1.73324 1.35581 1.39091 1.20676 0.93941 0.96035 1.08459 1.21801 1.01760 0.89781 0.94210 1.20866 0.92008 0.99955 1.00985 1.21734 0.95438 0.96187 0.96326 1.21278 0.97884 0.93487 1.02242 1.20791 0.93720 0.97153 0.95808 1.21889 0.90699 0.89430 1.03142 1.65239 1.31530 1.11620 1.13901 1.20870 0.99449 0.93815 0.87026 1.19167 0.92883 0.95547 1.11881 1.20635 0.95573 0.95014 0.97950 1.21165 0.97463 0.94466 1.13274 1.17972 0.92183 0.93207 0.88971 1.19843 1.04573 0.97863 1.30797 0.90964 1.26728 0.93325 1.05646 0.92200 1.69873 1.14806 1.39674 1.20800 0.85194 0.79540 0.76154 0.79023 1.18345 1.18763 1.19090 1.21232 0.96370 0.96137 1.06990 1.20704 0.97295 0.93521 0.99678 1.21918 0.85942 0.95375 1.02791 0.87317 0.87453 0.87725 0.80703 0.83318 0.85613 0.89416 0.87530 0.95243 0.90075 0.86864 0.88811 0.90195 0.88223 0.88056 0.90103 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 10.19 71.23 0.73 -1.00 16 2 C 0.40 7.47 7.23 28.03 0.20 7.67 16 3 O -0.51 -13.51 17.09 -2.96 -0.05 -13.57 16 4 C -0.19 -3.78 5.87 -20.15 -0.12 -3.90 16 5 C -0.06 -0.90 9.45 22.57 0.21 -0.68 16 6 C -0.12 -2.29 10.02 22.22 0.22 -2.07 16 7 C -0.10 -2.31 6.12 -19.55 -0.12 -2.43 16 8 C -0.15 -3.60 6.19 -19.69 -0.12 -3.72 16 9 C -0.06 -1.32 9.59 22.56 0.22 -1.10 16 10 C 0.08 1.85 6.65 85.50 0.57 2.42 16 11 N -0.50 -14.97 5.45 -901.57 -4.91 -19.88 16 12 C 0.12 3.82 4.84 85.56 0.41 4.23 16 13 C -0.19 -7.99 5.22 -19.67 -0.10 -8.09 16 14 C -0.07 -3.20 9.67 22.22 0.21 -2.98 16 15 C -0.24 -12.15 9.80 22.73 0.22 -11.93 16 16 C 0.08 4.31 5.58 -21.29 -0.12 4.19 16 17 C -0.50 -27.40 9.05 23.46 0.21 -27.19 16 18 H 0.07 3.85 7.91 -2.91 -0.02 3.82 16 19 C 0.04 1.81 5.14 85.26 0.44 2.25 16 20 N -0.83 -43.23 10.95 21.83 0.24 -42.99 16 21 Si 0.98 38.35 29.60 68.60 2.03 40.38 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 25 C -0.19 -9.82 8.70 22.73 0.20 -9.62 16 26 C -0.09 -4.19 8.41 22.22 0.19 -4.01 16 27 C 0.07 1.89 6.41 85.51 0.55 2.43 16 28 H 0.11 0.40 5.61 -2.39 -0.01 0.39 16 29 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.18 1.22 5.93 -2.91 -0.02 1.21 16 32 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.13 2.98 7.65 -2.91 -0.02 2.95 16 34 H 0.09 1.97 7.60 -2.39 -0.02 1.95 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.03 0.98 7.86 -2.38 -0.02 0.96 16 37 H 0.08 2.48 7.76 -2.39 -0.02 2.46 16 38 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 40 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 41 H 0.10 5.46 6.16 -2.91 -0.02 5.44 16 42 H 0.10 4.08 7.08 -2.91 -0.02 4.06 16 43 H 0.08 2.52 5.21 -2.39 -0.01 2.51 16 44 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -65.70 362.30 2.33 -63.37 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.02 Total: 28.22 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 4.00 Total: -55.54 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -4.67 Total: -62.87 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.05 Total: -13.57 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -65.70 2.33 -63.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411938528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.859 kcal (2) G-P(sol) polarization free energy of solvation -65.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds