Wall clock time and date at job start Tue Mar 31 2020 13:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00470 * 2 1 4 4 C 1.50700 * 109.47377 * 274.71733 * 3 2 1 5 5 C 1.38261 * 119.99654 * 355.05296 * 4 3 2 6 6 C 1.38211 * 119.99690 * 180.02562 * 5 4 3 7 7 C 1.38254 * 120.00494 * 359.95876 * 6 5 4 8 8 C 1.38217 * 119.99754 * 359.97324 * 7 6 5 9 9 C 1.38206 * 120.00150 * 175.21788 * 4 3 2 10 10 N 1.48020 * 120.00185 * 0.04472 * 9 4 3 11 11 O 1.21802 * 119.99904 * 186.15293 * 10 9 4 12 12 O 1.21794 * 120.00209 * 6.14950 * 10 9 4 13 13 C 1.34781 * 119.99607 * 180.02562 * 2 1 3 14 14 O 1.21285 * 119.99839 * 179.97438 * 13 2 1 15 15 C 1.50698 * 120.00322 * 359.97438 * 13 2 1 16 16 H 1.08995 * 109.47160 * 320.00197 * 15 13 2 17 17 N 1.46902 * 109.47192 * 199.99689 * 15 13 2 18 18 C 1.53001 * 109.47073 * 79.99926 * 15 13 2 19 19 C 1.52997 * 109.46811 * 184.99949 * 18 15 13 20 20 C 1.50704 * 109.46916 * 179.97438 * 19 18 15 21 21 H 1.08000 * 120.00093 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00081 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00038 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99790 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47054 * 90.00505 * 24 22 20 26 26 H 1.48506 * 109.47398 * 209.99928 * 24 22 20 27 27 H 1.48495 * 109.47801 * 330.00302 * 24 22 20 28 28 H 1.08995 * 109.47367 * 85.90549 * 1 2 3 29 29 H 1.09008 * 109.46853 * 205.90487 * 1 2 3 30 30 H 1.09003 * 109.46878 * 325.89742 * 1 2 3 31 31 H 1.08998 * 109.47387 * 154.70999 * 3 2 1 32 32 H 1.09013 * 109.46648 * 34.71390 * 3 2 1 33 33 H 1.08004 * 120.00081 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.99775 * 179.97438 * 6 5 4 35 35 H 1.07996 * 120.00452 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.00032 * 180.02562 * 8 7 6 37 37 H 1.00893 * 111.00012 * 176.04449 * 17 15 13 38 38 H 1.00904 * 111.00166 * 300.00592 * 17 15 13 39 39 H 1.09002 * 109.47200 * 304.99913 * 18 15 13 40 40 H 1.09000 * 109.47021 * 64.99824 * 18 15 13 41 41 H 1.08993 * 109.47416 * 299.99962 * 19 18 15 42 42 H 1.09000 * 109.47430 * 60.00126 * 19 18 15 43 43 H 0.96994 * 119.99894 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3476 1.7621 -1.4160 5 6 1.9148 0.9794 -2.4703 6 6 2.0529 1.4318 -3.7690 7 6 2.6230 2.6672 -4.0138 8 6 3.0544 3.4503 -2.9597 9 6 2.9210 2.9956 -1.6608 10 7 3.3886 3.8315 -0.5323 11 8 3.7901 4.9629 -0.7380 12 8 3.3717 3.3882 0.6019 13 6 2.1388 -1.1673 -0.0005 14 8 3.3517 -1.1673 -0.0010 15 6 1.3853 -2.4724 -0.0005 16 1 0.5222 -2.3935 0.6603 17 7 2.2678 -3.5473 0.4725 18 6 0.9128 -2.7884 -1.4210 19 6 0.0429 -4.0469 -1.4009 20 6 -0.4230 -4.3579 -2.7999 21 1 -0.1278 -3.7218 -3.6213 22 6 -1.2261 -5.4545 -3.0313 23 7 -1.6323 -5.7262 -4.2523 24 14 -1.7361 -6.5550 -1.6107 25 1 -3.0089 -6.0565 -1.0306 26 1 -1.9269 -7.9429 -2.1034 27 1 -0.6781 -6.5407 -0.5688 28 1 -0.3634 0.0734 -1.0250 29 1 -0.3633 -0.9245 0.4490 30 1 -0.3633 0.8510 0.5762 31 1 3.1839 1.1187 0.4390 32 1 1.6476 2.0057 0.5853 33 1 1.4688 0.0145 -2.2791 34 1 1.7152 0.8202 -4.5926 35 1 2.7313 3.0205 -5.0286 36 1 3.4994 4.4157 -3.1509 37 1 1.7678 -4.4208 0.5430 38 1 3.0762 -3.6404 -0.1241 39 1 0.3310 -1.9506 -1.8053 40 1 1.7778 -2.9548 -2.0630 41 1 0.6247 -4.8847 -1.0166 42 1 -0.8221 -3.8805 -0.7588 43 1 -2.1976 -6.4974 -4.4150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424086272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:49 Heat of formation + Delta-G solvation = -7.819526 kcal Electronic energy + Delta-G solvation = -27457.981213 eV Core-core repulsion = 23506.726018 eV Total energy + Delta-G solvation = -3951.255195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.44135 -40.51802 -39.35974 -36.86787 -36.00653 -35.67533 -32.95250 -32.61910 -31.87962 -30.42913 -28.44772 -27.10215 -26.62285 -25.70012 -23.78517 -22.69442 -22.10765 -20.46037 -19.53422 -18.93653 -18.77532 -17.81022 -17.56610 -16.87424 -16.85543 -16.35918 -15.50427 -15.15317 -14.92705 -14.82898 -14.33030 -14.16581 -13.95147 -13.82817 -13.34105 -13.12005 -12.80026 -12.74604 -12.64186 -12.52739 -12.36323 -11.89448 -11.83757 -11.67013 -11.45831 -11.27089 -11.19650 -11.06096 -10.46074 -10.18468 -9.97359 -9.88762 -9.51871 -9.42638 -9.41716 -8.95730 -8.70887 -8.42371 -6.20780 -4.20905 -0.35804 0.64091 1.14247 1.21518 2.64718 2.75488 2.99713 3.18131 3.27608 3.27862 4.02045 4.12580 4.29648 4.41675 4.51978 4.58179 4.69950 4.85849 4.89243 4.95663 5.10441 5.12380 5.21029 5.22848 5.37216 5.45678 5.46791 5.53083 5.65906 5.69485 5.83541 5.96200 6.01421 6.16346 6.26615 6.31318 6.52199 6.96663 7.10032 7.10937 7.36692 7.47154 7.56926 7.68627 8.17262 8.34059 8.81883 9.40503 10.92257 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.003247 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.617414 B = 8620.580172 C = 9553.825890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.622 5.622 3 C 0.150 3.850 4 C -0.029 4.029 5 C -0.109 4.109 6 C -0.058 4.058 7 C -0.124 4.124 8 C -0.055 4.055 9 C -0.048 4.048 10 N 0.033 4.967 11 O -0.168 6.168 12 O -0.162 6.162 13 C 0.526 3.474 14 O -0.527 6.527 15 C 0.070 3.930 16 H 0.101 0.899 17 N -0.831 5.831 18 C -0.130 4.130 19 C -0.010 4.010 20 C -0.525 4.525 21 H 0.071 0.929 22 C 0.068 3.932 23 N -0.900 5.900 24 Si 0.881 3.119 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.265 1.265 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.352 0.648 38 H 0.348 0.652 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.017 0.983 42 H 0.014 0.986 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 16.714 4.122 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.357 5.357 3 C 0.027 3.973 4 C -0.031 4.031 5 C -0.128 4.128 6 C -0.077 4.077 7 C -0.143 4.143 8 C -0.074 4.074 9 C -0.131 4.131 10 N 0.550 4.450 11 O -0.382 6.382 12 O -0.376 6.376 13 C 0.314 3.686 14 O -0.401 6.401 15 C -0.045 4.045 16 H 0.119 0.881 17 N -0.363 5.363 18 C -0.170 4.170 19 C -0.047 4.047 20 C -0.563 4.563 21 H 0.089 0.911 22 C -0.134 4.134 23 N -0.538 5.538 24 Si 0.708 3.292 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.190 1.190 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.033 0.967 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.098 16.606 4.175 17.866 hybrid contribution -0.614 -0.816 -0.211 1.042 sum 4.485 15.791 3.964 16.887 Atomic orbital electron populations 1.22035 0.78713 1.03981 1.02632 1.47920 1.07382 1.05383 1.74976 1.20708 1.00569 0.85369 0.90665 1.20395 0.93011 0.90590 0.99144 1.21281 0.99782 1.00592 0.91099 1.21762 0.93139 0.95161 0.97596 1.21244 0.99346 0.94443 0.99230 1.21028 0.96133 1.00832 0.89403 1.20880 1.11242 0.94071 0.86945 1.43605 0.98234 1.01006 1.02196 1.94525 1.48730 1.03949 1.90961 1.94526 1.58948 1.76105 1.08044 1.20935 0.88026 0.85170 0.74442 1.90665 1.14042 1.87123 1.48311 1.21597 0.95224 0.89302 0.98337 0.88143 1.58733 1.10955 1.09074 1.57514 1.22235 1.00647 1.00949 0.93181 1.19566 0.94396 0.92387 0.98382 1.21022 1.31038 1.11847 0.92389 0.91130 1.25036 0.95463 0.97311 0.95556 1.69900 1.35539 1.28359 1.19991 0.86772 0.79403 0.80117 0.82931 1.20220 1.21303 1.18955 0.91928 0.89640 0.91025 0.86195 0.87612 0.83366 0.83582 0.83531 0.83012 0.83323 0.83836 0.91968 0.92029 0.96526 0.96745 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 9.22 59.85 0.55 1.20 16 2 N -0.62 -7.44 1.71 -182.95 -0.31 -7.75 16 3 C 0.15 1.77 4.14 -5.20 -0.02 1.75 16 4 C -0.03 -0.33 5.87 -104.63 -0.61 -0.94 16 5 C -0.11 -1.20 9.04 -39.58 -0.36 -1.55 16 6 C -0.06 -0.52 10.05 -39.59 -0.40 -0.92 16 7 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 8 C -0.05 -0.49 9.56 -39.58 -0.38 -0.87 16 9 C -0.05 -0.54 6.83 -79.95 -0.55 -1.09 16 10 N 0.03 0.43 4.45 33.96 0.15 0.58 16 11 O -0.17 -2.22 18.46 -29.46 -0.54 -2.76 16 12 O -0.16 -2.20 15.46 -29.46 -0.46 -2.65 16 13 C 0.53 7.88 6.33 -10.98 -0.07 7.81 16 14 O -0.53 -9.60 15.76 5.55 0.09 -9.52 16 15 C 0.07 1.04 2.45 -68.86 -0.17 0.87 16 16 H 0.10 1.35 6.30 -51.93 -0.33 1.02 16 17 N -0.83 -12.73 8.94 -5.65 -0.05 -12.78 16 18 C -0.13 -2.21 4.71 -26.73 -0.13 -2.33 16 19 C -0.01 -0.21 3.81 -27.88 -0.11 -0.31 16 20 C -0.53 -13.70 9.66 -34.44 -0.33 -14.03 16 21 H 0.07 1.99 7.99 -52.49 -0.42 1.57 16 22 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 23 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 24 Si 0.88 20.25 27.47 -169.99 -4.67 15.58 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 28 H 0.06 0.57 7.27 -51.93 -0.38 0.19 16 29 H 0.09 0.79 5.79 -51.92 -0.30 0.49 16 30 H 0.07 0.52 7.99 -51.93 -0.41 0.11 16 31 H 0.12 1.67 6.59 -51.93 -0.34 1.33 16 32 H 0.11 1.10 7.03 -51.92 -0.37 0.73 16 33 H 0.15 1.76 5.57 -52.48 -0.29 1.46 16 34 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.15 1.11 7.62 -52.49 -0.40 0.71 16 37 H 0.35 5.21 7.55 -39.30 -0.30 4.92 16 38 H 0.35 5.47 8.58 -39.29 -0.34 5.13 16 39 H 0.06 0.99 6.77 -51.93 -0.35 0.64 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 42 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -32.13 355.26 -8.09 -40.22 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.36 Total: 9.25 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.06 Total: -9.99 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.56 Total: -45.48 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.91 Total: -14.93 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.13 -8.09 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424086272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.396 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds