Wall clock time and date at job start Tue Mar 31 2020 13:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00470 * 2 1 4 4 C 1.50700 * 109.47377 * 274.71733 * 3 2 1 5 5 C 1.38261 * 119.99654 * 355.05296 * 4 3 2 6 6 C 1.38211 * 119.99690 * 180.02562 * 5 4 3 7 7 C 1.38254 * 120.00494 * 359.95876 * 6 5 4 8 8 C 1.38217 * 119.99754 * 359.97324 * 7 6 5 9 9 C 1.38206 * 120.00150 * 175.21788 * 4 3 2 10 10 N 1.48020 * 120.00185 * 0.04472 * 9 4 3 11 11 O 1.21802 * 119.99904 * 186.15293 * 10 9 4 12 12 O 1.21794 * 120.00209 * 6.14950 * 10 9 4 13 13 C 1.34781 * 119.99607 * 180.02562 * 2 1 3 14 14 O 1.21285 * 119.99839 * 179.97438 * 13 2 1 15 15 C 1.50698 * 120.00322 * 359.97438 * 13 2 1 16 16 H 1.08995 * 109.47160 * 320.00197 * 15 13 2 17 17 N 1.46902 * 109.47192 * 199.99689 * 15 13 2 18 18 C 1.53001 * 109.47073 * 79.99926 * 15 13 2 19 19 C 1.52997 * 109.46811 * 184.99949 * 18 15 13 20 20 C 1.50704 * 109.46916 * 179.97438 * 19 18 15 21 21 H 1.08000 * 120.00093 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00081 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00038 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99790 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47054 * 90.00505 * 24 22 20 26 26 H 1.48506 * 109.47398 * 209.99928 * 24 22 20 27 27 H 1.48495 * 109.47801 * 330.00302 * 24 22 20 28 28 H 1.08995 * 109.47367 * 85.90549 * 1 2 3 29 29 H 1.09008 * 109.46853 * 205.90487 * 1 2 3 30 30 H 1.09003 * 109.46878 * 325.89742 * 1 2 3 31 31 H 1.08998 * 109.47387 * 154.70999 * 3 2 1 32 32 H 1.09013 * 109.46648 * 34.71390 * 3 2 1 33 33 H 1.08004 * 120.00081 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.99775 * 179.97438 * 6 5 4 35 35 H 1.07996 * 120.00452 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.00032 * 180.02562 * 8 7 6 37 37 H 1.00893 * 111.00012 * 176.04449 * 17 15 13 38 38 H 1.00904 * 111.00166 * 300.00592 * 17 15 13 39 39 H 1.09002 * 109.47200 * 304.99913 * 18 15 13 40 40 H 1.09000 * 109.47021 * 64.99824 * 18 15 13 41 41 H 1.08993 * 109.47416 * 299.99962 * 19 18 15 42 42 H 1.09000 * 109.47430 * 60.00126 * 19 18 15 43 43 H 0.96994 * 119.99894 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3476 1.7621 -1.4160 5 6 1.9148 0.9794 -2.4703 6 6 2.0529 1.4318 -3.7690 7 6 2.6230 2.6672 -4.0138 8 6 3.0544 3.4503 -2.9597 9 6 2.9210 2.9956 -1.6608 10 7 3.3886 3.8315 -0.5323 11 8 3.7901 4.9629 -0.7380 12 8 3.3717 3.3882 0.6019 13 6 2.1388 -1.1673 -0.0005 14 8 3.3517 -1.1673 -0.0010 15 6 1.3853 -2.4724 -0.0005 16 1 0.5222 -2.3935 0.6603 17 7 2.2678 -3.5473 0.4725 18 6 0.9128 -2.7884 -1.4210 19 6 0.0429 -4.0469 -1.4009 20 6 -0.4230 -4.3579 -2.7999 21 1 -0.1278 -3.7218 -3.6213 22 6 -1.2261 -5.4545 -3.0313 23 7 -1.6323 -5.7262 -4.2523 24 14 -1.7361 -6.5550 -1.6107 25 1 -3.0089 -6.0565 -1.0306 26 1 -1.9269 -7.9429 -2.1034 27 1 -0.6781 -6.5407 -0.5688 28 1 -0.3634 0.0734 -1.0250 29 1 -0.3633 -0.9245 0.4490 30 1 -0.3633 0.8510 0.5762 31 1 3.1839 1.1187 0.4390 32 1 1.6476 2.0057 0.5853 33 1 1.4688 0.0145 -2.2791 34 1 1.7152 0.8202 -4.5926 35 1 2.7313 3.0205 -5.0286 36 1 3.4994 4.4157 -3.1509 37 1 1.7678 -4.4208 0.5430 38 1 3.0762 -3.6404 -0.1241 39 1 0.3310 -1.9506 -1.8053 40 1 1.7778 -2.9548 -2.0630 41 1 0.6247 -4.8847 -1.0166 42 1 -0.8221 -3.8805 -0.7588 43 1 -2.1976 -6.4974 -4.4150 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424086272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:49 Heat of formation + Delta-G solvation = -27.999870 kcal Electronic energy + Delta-G solvation = -27458.856299 eV Core-core repulsion = 23506.726018 eV Total energy + Delta-G solvation = -3952.130281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.38520 -41.55879 -40.26830 -37.85736 -37.25766 -36.83987 -34.82450 -33.46774 -32.69837 -32.07816 -29.44254 -28.28208 -27.57323 -26.87609 -25.09623 -23.63921 -23.04872 -21.98846 -20.50897 -19.97443 -19.72206 -19.05685 -18.72738 -18.49080 -17.70821 -17.34354 -16.47637 -16.22522 -16.07221 -15.97484 -15.76962 -15.37969 -15.14838 -14.72634 -14.66091 -14.42682 -14.17829 -13.82806 -13.63328 -13.42972 -13.30928 -13.20525 -12.94105 -12.69907 -12.63486 -12.58896 -12.28488 -12.17251 -12.07326 -11.84985 -11.67177 -11.38683 -10.78738 -10.75512 -10.66963 -10.19909 -9.95427 -9.67622 -8.28443 -6.33071 -1.25844 -0.10434 0.25426 0.32765 1.38861 1.41749 1.47651 1.51615 1.76083 2.24248 2.37112 3.07861 3.21909 3.31491 3.44920 3.67764 3.70303 3.89647 3.97086 3.99294 4.06540 4.13691 4.16495 4.28655 4.42081 4.54339 4.62024 4.63843 4.70984 4.75093 4.90865 4.92932 4.96524 5.10972 5.14653 5.34256 5.36827 5.47123 5.48225 5.63919 5.98899 6.23555 6.26792 6.46475 6.46673 6.75280 7.04047 7.31918 8.87844 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.003247 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.617414 B = 8620.580172 C = 9553.825890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.611 5.611 3 C 0.154 3.846 4 C -0.040 4.040 5 C -0.125 4.125 6 C -0.056 4.056 7 C -0.109 4.109 8 C -0.052 4.052 9 C -0.063 4.063 10 N 0.034 4.966 11 O -0.172 6.172 12 O -0.187 6.187 13 C 0.525 3.475 14 O -0.566 6.566 15 C 0.079 3.921 16 H 0.123 0.877 17 N -0.833 5.833 18 C -0.117 4.117 19 C -0.006 4.006 20 C -0.529 4.529 21 H 0.032 0.968 22 C 0.005 3.995 23 N -0.952 5.952 24 Si 0.947 3.053 25 H -0.265 1.265 26 H -0.293 1.293 27 H -0.240 1.240 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.164 0.836 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.355 0.645 38 H 0.344 0.656 39 H 0.071 0.929 40 H 0.043 0.957 41 H 0.022 0.978 42 H 0.031 0.969 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.998 17.442 4.742 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.344 5.344 3 C 0.031 3.969 4 C -0.043 4.043 5 C -0.143 4.143 6 C -0.074 4.074 7 C -0.127 4.127 8 C -0.071 4.071 9 C -0.147 4.147 10 N 0.547 4.453 11 O -0.387 6.387 12 O -0.397 6.397 13 C 0.314 3.686 14 O -0.444 6.444 15 C -0.036 4.036 16 H 0.140 0.860 17 N -0.365 5.365 18 C -0.156 4.156 19 C -0.044 4.044 20 C -0.567 4.567 21 H 0.050 0.950 22 C -0.192 4.192 23 N -0.592 5.592 24 Si 0.771 3.229 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.163 1.163 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.154 0.846 34 H 0.181 0.819 35 H 0.202 0.798 36 H 0.189 0.811 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.393 17.359 4.849 18.551 hybrid contribution -0.392 -0.948 -0.574 1.175 sum 4.001 16.411 4.275 17.425 Atomic orbital electron populations 1.22280 0.76806 1.05444 1.03524 1.47901 1.08483 1.04645 1.73397 1.20632 0.99553 0.85364 0.91376 1.20318 0.94027 0.91031 0.98885 1.21273 1.00763 1.00234 0.92070 1.22062 0.92354 0.95873 0.97124 1.21659 0.97246 0.93263 1.00539 1.21401 0.95410 1.01714 0.88551 1.21061 1.12334 0.94096 0.87175 1.43849 0.97913 1.01024 1.02508 1.94498 1.48781 1.04388 1.91004 1.94521 1.60024 1.76240 1.08879 1.20942 0.87531 0.85944 0.74226 1.90649 1.15635 1.87691 1.50430 1.21536 0.95770 0.89215 0.97085 0.85970 1.58747 1.10960 1.09410 1.57367 1.22022 0.99388 0.99654 0.94572 1.19502 0.95486 0.94203 0.95205 1.21401 1.30287 1.10907 0.94083 0.94990 1.26000 0.95739 0.99185 0.98282 1.70064 1.37109 1.29398 1.22651 0.85698 0.80007 0.77341 0.79851 1.18992 1.21949 1.16276 0.91469 0.89064 0.88560 0.88680 0.86332 0.84615 0.81851 0.79752 0.81104 0.82902 0.84237 0.91076 0.93855 0.95953 0.95072 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 9.22 127.77 1.18 2.19 16 2 N -0.61 -14.13 1.71 -851.11 -1.45 -15.59 16 3 C 0.15 3.63 4.14 85.63 0.35 3.98 16 4 C -0.04 -0.90 5.87 -19.87 -0.12 -1.02 16 5 C -0.12 -2.64 9.04 22.27 0.20 -2.44 16 6 C -0.06 -0.88 10.05 22.27 0.22 -0.66 16 7 C -0.11 -1.31 10.05 22.27 0.22 -1.09 16 8 C -0.05 -0.81 9.56 22.27 0.21 -0.60 16 9 C -0.06 -1.37 6.83 36.37 0.25 -1.12 16 10 N 0.03 0.87 4.45 -46.46 -0.21 0.66 16 11 O -0.17 -4.44 18.46 18.88 0.35 -4.10 16 12 O -0.19 -5.18 15.46 18.89 0.29 -4.88 16 13 C 0.52 15.47 6.33 87.66 0.55 16.03 16 14 O -0.57 -20.93 15.76 -3.04 -0.05 -20.97 16 15 C 0.08 2.22 2.45 44.17 0.11 2.32 16 16 H 0.12 2.92 6.30 -2.39 -0.02 2.91 16 17 N -0.83 -24.43 8.94 -171.80 -1.54 -25.96 16 18 C -0.12 -3.83 4.71 30.59 0.14 -3.69 16 19 C -0.01 -0.26 3.81 29.85 0.11 -0.14 16 20 C -0.53 -27.70 9.66 25.60 0.25 -27.45 16 21 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 22 C 0.00 0.26 5.47 84.66 0.46 0.73 16 23 N -0.95 -56.77 13.96 21.45 0.30 -56.47 16 24 Si 0.95 40.75 27.47 68.60 1.88 42.63 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 28 H 0.07 1.09 7.27 -2.39 -0.02 1.08 16 29 H 0.09 1.43 5.79 -2.38 -0.01 1.42 16 30 H 0.10 1.16 7.99 -2.39 -0.02 1.14 16 31 H 0.10 2.76 6.59 -2.39 -0.02 2.75 16 32 H 0.12 2.42 7.03 -2.38 -0.02 2.40 16 33 H 0.14 3.18 5.57 -2.91 -0.02 3.16 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.17 2.00 7.62 -2.91 -0.02 1.98 16 37 H 0.36 9.79 7.55 -89.70 -0.68 9.11 16 38 H 0.34 10.66 8.58 -89.69 -0.77 9.89 16 39 H 0.07 2.19 6.77 -2.39 -0.02 2.17 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.02 0.87 5.93 -2.39 -0.01 0.86 16 42 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 43 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -71.57 355.26 3.31 -68.26 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -0.43 Total: 29.37 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.16 Total: -12.95 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -2.90 Total: -97.36 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: 0.59 Total: -29.95 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.88 Total: 42.63 kcal Total: -71.57 3.31 -68.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424086272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.261 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds