Wall clock time and date at job start Tue Mar 31 2020 13:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21288 * 119.99873 * 2 1 4 4 N 1.34776 * 119.99874 * 180.02562 * 2 1 3 5 5 C 1.39917 * 120.00075 * 185.27630 * 4 2 1 6 6 C 1.38933 * 120.04163 * 213.30012 * 5 4 2 7 7 C 1.38126 * 120.03704 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.12639 * 359.68018 * 7 6 5 9 9 C 1.38762 * 120.08446 * 0.59353 * 8 7 6 10 10 O 1.35893 * 120.02114 * 179.69880 * 9 8 7 11 11 C 1.42897 * 117.00074 * 359.73109 * 10 9 8 12 12 C 1.53004 * 109.47092 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47338 * 64.99897 * 12 11 10 14 14 C 1.34774 * 120.00088 * 180.02562 * 13 12 11 15 15 O 1.21590 * 120.00016 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00112 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00235 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47359 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99631 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99956 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99369 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00048 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46974 * 90.00298 * 22 20 18 24 24 H 1.48500 * 109.47072 * 210.00185 * 22 20 18 25 25 H 1.48501 * 109.47019 * 330.00172 * 22 20 18 26 26 C 1.38631 * 119.95633 * 359.42885 * 9 8 7 27 27 H 1.08999 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46833 * 299.99973 * 1 2 3 29 29 H 1.09001 * 109.47207 * 59.99618 * 1 2 3 30 30 H 0.96997 * 120.00199 * 5.26862 * 4 2 1 31 31 H 1.08000 * 119.98133 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.93371 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.96007 * 180.29750 * 8 7 6 34 34 H 1.09000 * 109.46637 * 299.99487 * 11 10 9 35 35 H 1.08994 * 109.47528 * 59.99532 * 11 10 9 36 36 H 1.09005 * 109.46820 * 184.99967 * 12 11 10 37 37 H 1.09002 * 109.47082 * 304.99587 * 12 11 10 38 38 H 0.97003 * 120.00103 * 0.02562 * 13 12 11 39 39 H 0.97003 * 120.00079 * 0.02562 * 16 14 13 40 40 H 1.08997 * 109.47006 * 299.99948 * 17 16 14 41 41 H 1.09005 * 109.47074 * 60.00105 * 17 16 14 42 42 H 0.97006 * 119.99099 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.05730 * 180.25013 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5756 -1.1699 0.1109 6 6 4.3233 -2.1447 -0.5379 7 6 5.7001 -2.1475 -0.4274 8 6 6.3379 -1.1776 0.3229 9 6 5.5958 -0.2049 0.9776 10 8 6.2238 0.7445 1.7199 11 6 7.6496 0.6774 1.7871 12 6 8.1733 1.8194 2.6603 13 7 7.7112 1.6323 4.0378 14 6 8.0521 2.5233 4.9899 15 8 8.7436 3.4821 4.7056 16 7 7.6274 2.3509 6.2573 17 6 7.9975 3.3196 7.2921 18 6 7.3997 2.8998 8.6102 19 1 6.8039 2.0010 8.6711 20 6 7.6132 3.6632 9.7384 21 7 7.0918 3.2965 10.8887 22 14 8.6429 5.2182 9.6328 23 1 7.7641 6.3735 9.3199 24 1 9.3226 5.4509 10.9324 25 1 9.6607 5.0661 8.5621 26 6 4.2137 -0.1990 0.8695 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6989 -2.0054 -0.0780 31 1 3.8277 -2.9006 -1.1289 32 1 6.2797 -2.9064 -0.9321 33 1 7.4148 -1.1796 0.4035 34 1 7.9484 -0.2775 2.2195 35 1 8.0653 0.7678 0.7836 36 1 9.2632 1.8220 2.6398 37 1 7.8005 2.7696 2.2778 38 1 7.1598 0.8672 4.2648 39 1 7.0767 1.5853 6.4844 40 1 9.0831 3.3591 7.3812 41 1 7.6193 4.3049 7.0193 42 1 7.2424 3.8334 11.6825 43 1 3.6348 0.5597 1.3752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426424474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:43 Heat of formation + Delta-G solvation = -75.130377 kcal Electronic energy + Delta-G solvation = -25531.562924 eV Core-core repulsion = 21577.388912 eV Total energy + Delta-G solvation = -3954.174013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00611 -39.92941 -39.17554 -37.73763 -35.11715 -34.62191 -34.00796 -32.30749 -31.39392 -30.77437 -29.31110 -28.82950 -27.40617 -23.97209 -23.22771 -22.27640 -21.68509 -20.74244 -20.29203 -18.98562 -18.24915 -17.43066 -16.63531 -16.55804 -16.41556 -16.30012 -15.95126 -15.60587 -15.17370 -14.93639 -14.38257 -14.30521 -13.96787 -13.80696 -13.57056 -13.20144 -13.16786 -13.13951 -12.86599 -12.61006 -12.31872 -12.20667 -12.12591 -11.90089 -11.55464 -11.21564 -10.93119 -10.71487 -10.62375 -10.24919 -9.91997 -9.56043 -9.40603 -8.83593 -8.71106 -8.70372 -8.38106 -7.95324 -6.16332 -4.17762 0.90220 1.14848 2.17905 2.52593 2.98676 3.28134 3.33025 3.39666 3.47746 3.49015 3.86931 4.27485 4.38852 4.46082 4.63406 4.66624 4.75351 4.78943 4.80290 4.91597 4.95406 5.00502 5.12323 5.19380 5.21199 5.28165 5.44301 5.65624 5.79072 5.86878 5.92663 6.05710 6.14199 6.50287 6.76564 6.80169 6.91935 7.17573 7.18670 7.30003 7.46653 7.62256 7.66510 8.33418 8.74521 8.86879 9.26241 9.45682 10.95714 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002225 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.798243 B =12582.401679 C =13719.508433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.518 6.518 4 N -0.675 5.675 5 C 0.182 3.818 6 C -0.187 4.187 7 C -0.060 4.060 8 C -0.225 4.225 9 C 0.154 3.846 10 O -0.305 6.305 11 C 0.048 3.952 12 C 0.144 3.856 13 N -0.753 5.753 14 C 0.696 3.304 15 O -0.605 6.605 16 N -0.722 5.722 17 C 0.238 3.762 18 C -0.541 4.541 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.894 5.894 22 Si 0.878 3.122 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.260 1.260 26 C -0.156 4.156 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.413 0.587 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.396 0.604 39 H 0.392 0.608 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.267 0.733 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 -16.302 -27.022 33.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.392 6.392 4 N -0.321 5.321 5 C 0.087 3.913 6 C -0.207 4.207 7 C -0.079 4.079 8 C -0.245 4.245 9 C 0.107 3.893 10 O -0.218 6.218 11 C -0.028 4.028 12 C 0.020 3.980 13 N -0.411 5.411 14 C 0.395 3.605 15 O -0.485 6.485 16 N -0.374 5.374 17 C 0.115 3.885 18 C -0.579 4.579 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.532 5.532 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.184 1.184 26 C -0.176 4.176 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.249 0.751 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.229 0.771 39 H 0.226 0.774 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.935 -14.369 -26.923 31.798 hybrid contribution -0.161 -0.564 0.152 0.605 sum -9.096 -14.933 -26.771 31.975 Atomic orbital electron populations 1.21867 0.90477 1.04591 1.05955 1.21098 0.91018 0.83151 0.75151 1.90810 1.70381 1.31118 1.46867 1.43707 1.05130 1.10089 1.73177 1.17357 0.82713 0.96017 0.95172 1.20749 0.94143 1.01817 1.04003 1.20696 0.93623 0.97113 0.96472 1.21266 1.00352 0.98402 1.04451 1.18754 0.91633 0.88121 0.90760 1.86184 1.21203 1.48564 1.65898 1.23192 0.78765 1.00065 1.00746 1.21124 0.99067 0.97559 0.80297 1.45026 1.58578 1.29411 1.08075 1.16088 0.80662 0.82581 0.81132 1.90861 1.43897 1.32097 1.81665 1.45379 1.55292 1.30018 1.06760 1.19359 0.95933 0.87865 0.85312 1.21107 1.33867 1.11930 0.90987 0.90312 1.24788 0.95207 0.97756 0.94946 1.69891 1.44363 1.39240 0.99674 0.86801 0.81347 0.83532 0.77924 1.19849 1.20974 1.18430 1.20294 0.91967 1.02375 1.02998 0.90286 0.88037 0.88315 0.75083 0.85675 0.85345 0.85227 0.91049 0.90263 0.89576 0.90664 0.77072 0.77443 0.95903 0.96362 0.92325 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.39 36.01 0.37 -0.28 16 2 C 0.51 4.29 7.68 -10.99 -0.08 4.21 16 3 O -0.52 -7.06 14.79 5.55 0.08 -6.98 16 4 N -0.67 -4.56 5.34 -9.88 -0.05 -4.61 16 5 C 0.18 1.71 6.28 -83.72 -0.53 1.19 16 6 C -0.19 -1.40 9.96 -39.37 -0.39 -1.79 16 7 C -0.06 -0.45 10.03 -39.63 -0.40 -0.85 16 8 C -0.23 -2.01 9.04 -39.40 -0.36 -2.36 16 9 C 0.15 1.77 6.68 -39.24 -0.26 1.51 16 10 O -0.31 -3.76 10.08 -19.40 -0.20 -3.95 16 11 C 0.05 0.45 4.87 37.16 0.18 0.63 16 12 C 0.14 1.81 6.06 -4.04 -0.02 1.79 16 13 N -0.75 -11.48 5.51 -65.22 -0.36 -11.83 16 14 C 0.70 14.37 8.57 -86.92 -0.74 13.63 16 15 O -0.61 -14.83 16.34 5.29 0.09 -14.74 16 16 N -0.72 -15.60 5.55 -66.41 -0.37 -15.97 16 17 C 0.24 6.13 4.50 -5.19 -0.02 6.10 16 18 C -0.54 -15.27 9.83 -34.44 -0.34 -15.61 16 19 H 0.08 2.31 7.84 -52.48 -0.41 1.89 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 22 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 26 C -0.16 -1.89 8.59 -39.25 -0.34 -2.23 16 27 H 0.08 0.08 7.92 -51.93 -0.41 -0.34 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.41 1.14 8.66 -40.82 -0.35 0.79 16 31 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 34 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 35 H 0.08 0.58 7.65 -51.93 -0.40 0.18 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.40 5.14 8.49 -40.82 -0.35 4.80 16 39 H 0.39 7.49 8.34 -40.82 -0.34 7.15 16 40 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 41 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.14 2.02 6.41 -52.48 -0.34 1.69 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -38.54 368.76 -7.97 -46.51 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.80 Total: 6.90 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -3.03 Total: 8.04 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.01 Total: -58.67 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.03 Total: -25.67 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.54 -7.97 -46.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.620 kcal (2) G-P(sol) polarization free energy of solvation -38.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds