Wall clock time and date at job start Tue Mar 31 2020 13:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21288 * 119.99873 * 2 1 4 4 N 1.34776 * 119.99874 * 180.02562 * 2 1 3 5 5 C 1.39917 * 120.00075 * 185.27630 * 4 2 1 6 6 C 1.38933 * 120.04163 * 213.30012 * 5 4 2 7 7 C 1.38126 * 120.03704 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.12639 * 359.68018 * 7 6 5 9 9 C 1.38762 * 120.08446 * 0.59353 * 8 7 6 10 10 O 1.35893 * 120.02114 * 179.69880 * 9 8 7 11 11 C 1.42897 * 117.00074 * 359.73109 * 10 9 8 12 12 C 1.53004 * 109.47092 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47338 * 64.99897 * 12 11 10 14 14 C 1.34774 * 120.00088 * 180.02562 * 13 12 11 15 15 O 1.21590 * 120.00016 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00112 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00235 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47359 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99631 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99956 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99369 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00048 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46974 * 90.00298 * 22 20 18 24 24 H 1.48500 * 109.47072 * 210.00185 * 22 20 18 25 25 H 1.48501 * 109.47019 * 330.00172 * 22 20 18 26 26 C 1.38631 * 119.95633 * 359.42885 * 9 8 7 27 27 H 1.08999 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46833 * 299.99973 * 1 2 3 29 29 H 1.09001 * 109.47207 * 59.99618 * 1 2 3 30 30 H 0.96997 * 120.00199 * 5.26862 * 4 2 1 31 31 H 1.08000 * 119.98133 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.93371 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.96007 * 180.29750 * 8 7 6 34 34 H 1.09000 * 109.46637 * 299.99487 * 11 10 9 35 35 H 1.08994 * 109.47528 * 59.99532 * 11 10 9 36 36 H 1.09005 * 109.46820 * 184.99967 * 12 11 10 37 37 H 1.09002 * 109.47082 * 304.99587 * 12 11 10 38 38 H 0.97003 * 120.00103 * 0.02562 * 13 12 11 39 39 H 0.97003 * 120.00079 * 0.02562 * 16 14 13 40 40 H 1.08997 * 109.47006 * 299.99948 * 17 16 14 41 41 H 1.09005 * 109.47074 * 60.00105 * 17 16 14 42 42 H 0.97006 * 119.99099 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.05730 * 180.25013 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5756 -1.1699 0.1109 6 6 4.3233 -2.1447 -0.5379 7 6 5.7001 -2.1475 -0.4274 8 6 6.3379 -1.1776 0.3229 9 6 5.5958 -0.2049 0.9776 10 8 6.2238 0.7445 1.7199 11 6 7.6496 0.6774 1.7871 12 6 8.1733 1.8194 2.6603 13 7 7.7112 1.6323 4.0378 14 6 8.0521 2.5233 4.9899 15 8 8.7436 3.4821 4.7056 16 7 7.6274 2.3509 6.2573 17 6 7.9975 3.3196 7.2921 18 6 7.3997 2.8998 8.6102 19 1 6.8039 2.0010 8.6711 20 6 7.6132 3.6632 9.7384 21 7 7.0918 3.2965 10.8887 22 14 8.6429 5.2182 9.6328 23 1 7.7641 6.3735 9.3199 24 1 9.3226 5.4509 10.9324 25 1 9.6607 5.0661 8.5621 26 6 4.2137 -0.1990 0.8695 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6989 -2.0054 -0.0780 31 1 3.8277 -2.9006 -1.1289 32 1 6.2797 -2.9064 -0.9321 33 1 7.4148 -1.1796 0.4035 34 1 7.9484 -0.2775 2.2195 35 1 8.0653 0.7678 0.7836 36 1 9.2632 1.8220 2.6398 37 1 7.8005 2.7696 2.2778 38 1 7.1598 0.8672 4.2648 39 1 7.0767 1.5853 6.4844 40 1 9.0831 3.3591 7.3812 41 1 7.6193 4.3049 7.0193 42 1 7.2424 3.8334 11.6825 43 1 3.6348 0.5597 1.3752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426424474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:42 Heat of formation + Delta-G solvation = -106.462119 kcal Electronic energy + Delta-G solvation = -25532.921571 eV Core-core repulsion = 21577.388912 eV Total energy + Delta-G solvation = -3955.532659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69797 -41.01316 -40.46769 -38.51423 -36.42779 -35.85245 -35.43648 -34.40797 -32.07163 -31.59099 -30.48644 -29.37629 -29.13544 -24.98107 -24.13898 -23.73355 -22.66939 -21.96660 -21.43572 -19.99772 -19.68220 -18.37733 -18.07170 -17.70314 -17.27898 -17.13420 -16.82236 -16.67649 -16.48430 -16.18658 -16.05256 -15.24836 -15.06503 -14.97491 -14.78478 -14.44498 -14.40642 -14.23003 -13.86422 -13.58486 -13.42412 -13.13887 -13.03548 -12.93641 -12.71276 -12.65204 -12.29252 -11.98531 -11.92064 -11.66126 -11.35250 -11.26843 -10.96279 -10.92109 -10.35224 -9.68242 -9.45045 -9.04276 -8.40195 -6.47043 0.22189 0.46159 1.33692 1.35030 1.48953 1.54524 1.82574 1.95306 2.18629 2.28899 2.30898 2.81766 2.95261 3.46493 3.67115 3.83093 3.93857 4.06959 4.15009 4.24016 4.29266 4.36096 4.44110 4.56342 4.59407 4.62525 4.69865 4.79547 4.82081 5.04733 5.07156 5.24130 5.27267 5.31027 5.35582 5.46083 5.49159 5.54208 5.86339 5.94889 6.26028 6.40745 6.45119 6.54546 7.10857 7.12602 7.23341 7.63447 8.74655 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.002225 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.798243 B =12582.401679 C =13719.508433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.499 3.501 3 O -0.580 6.580 4 N -0.661 5.661 5 C 0.170 3.830 6 C -0.179 4.179 7 C -0.057 4.057 8 C -0.226 4.226 9 C 0.132 3.868 10 O -0.335 6.335 11 C 0.054 3.946 12 C 0.140 3.860 13 N -0.733 5.733 14 C 0.694 3.306 15 O -0.644 6.644 16 N -0.723 5.723 17 C 0.251 3.749 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.026 3.974 21 N -0.931 5.931 22 Si 0.939 3.061 23 H -0.266 1.266 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.190 4.190 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.433 0.567 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.409 0.591 39 H 0.404 0.596 40 H 0.013 0.987 41 H 0.007 0.993 42 H 0.273 0.727 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 -18.532 -29.219 35.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.290 3.710 3 O -0.459 6.459 4 N -0.308 5.308 5 C 0.075 3.925 6 C -0.199 4.199 7 C -0.075 4.075 8 C -0.245 4.245 9 C 0.086 3.914 10 O -0.249 6.249 11 C -0.020 4.020 12 C 0.016 3.984 13 N -0.390 5.390 14 C 0.394 3.606 15 O -0.527 6.527 16 N -0.376 5.376 17 C 0.127 3.873 18 C -0.584 4.584 19 H 0.076 0.924 20 C -0.174 4.174 21 N -0.570 5.570 22 Si 0.763 3.237 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.184 1.184 26 C -0.211 4.211 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.273 0.727 31 H 0.177 0.823 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.244 0.756 39 H 0.239 0.761 40 H 0.031 0.969 41 H 0.025 0.975 42 H 0.082 0.918 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.707 -16.707 -29.158 34.715 hybrid contribution -0.315 0.001 0.759 0.821 sum -9.022 -16.706 -28.399 34.161 Atomic orbital electron populations 1.21906 0.86745 1.07136 1.06193 1.21996 0.92813 0.82559 0.73616 1.90786 1.71914 1.33363 1.49810 1.43669 1.04432 1.10744 1.71983 1.17594 0.83976 0.95923 0.95020 1.21156 0.94406 1.01346 1.02990 1.21188 0.93912 0.97018 0.95406 1.21550 1.01391 0.97710 1.03819 1.18932 0.91560 0.89038 0.91868 1.86124 1.22533 1.49613 1.66674 1.23243 0.77765 0.99505 1.01536 1.21349 0.99903 0.98316 0.78853 1.44923 1.57551 1.28358 1.08209 1.16208 0.80260 0.82826 0.81297 1.90829 1.45662 1.33947 1.82260 1.45126 1.55872 1.29878 1.06769 1.18961 0.94931 0.88194 0.85228 1.21272 1.33551 1.11288 0.92314 0.92396 1.25599 0.96336 1.00896 0.94591 1.69987 1.45721 1.40785 1.00496 0.85831 0.79820 0.79713 0.78369 1.19128 1.19532 1.18410 1.20274 0.92657 1.03166 1.05022 0.86600 0.88146 0.87526 0.72656 0.82311 0.81845 0.82993 0.88756 0.87539 0.88334 0.92546 0.75561 0.76101 0.96875 0.97506 0.91794 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 10.39 71.24 0.74 -0.31 16 2 C 0.50 8.62 7.68 87.66 0.67 9.29 16 3 O -0.58 -17.17 14.79 -3.05 -0.05 -17.21 16 4 N -0.66 -8.35 5.34 -303.55 -1.62 -9.97 16 5 C 0.17 3.10 6.28 38.14 0.24 3.34 16 6 C -0.18 -2.16 9.96 22.41 0.22 -1.94 16 7 C -0.06 -0.65 10.03 22.24 0.22 -0.43 16 8 C -0.23 -3.47 9.04 22.39 0.20 -3.27 16 9 C 0.13 3.03 6.68 22.49 0.15 3.18 16 10 O -0.34 -8.32 10.08 -92.35 -0.93 -9.25 16 11 C 0.05 0.93 4.87 71.98 0.35 1.28 16 12 C 0.14 3.40 6.06 86.38 0.52 3.92 16 13 N -0.73 -22.01 5.51 -478.53 -2.64 -24.65 16 14 C 0.69 28.74 8.57 179.06 1.53 30.28 16 15 O -0.64 -31.77 16.34 -4.00 -0.07 -31.83 16 16 N -0.72 -31.47 5.55 -482.29 -2.68 -34.15 16 17 C 0.25 13.04 4.50 85.63 0.38 13.43 16 18 C -0.55 -31.33 9.83 25.60 0.25 -31.08 16 19 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 20 C 0.03 1.51 5.47 84.65 0.46 1.98 16 21 N -0.93 -56.79 13.96 21.45 0.30 -56.49 16 22 Si 0.94 45.43 27.47 68.60 1.88 47.31 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 26 C -0.19 -4.88 8.59 22.49 0.19 -4.69 16 27 H 0.12 -0.13 7.92 -2.39 -0.02 -0.15 16 28 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.43 1.41 8.66 -92.71 -0.80 0.61 16 31 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 32 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 33 H 0.15 1.55 6.29 -2.91 -0.02 1.53 16 34 H 0.09 1.20 7.67 -2.39 -0.02 1.18 16 35 H 0.11 1.28 7.65 -2.39 -0.02 1.26 16 36 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 10.33 8.49 -92.71 -0.79 9.54 16 39 H 0.40 15.54 8.34 -92.71 -0.77 14.77 16 40 H 0.01 0.72 7.20 -2.39 -0.02 0.70 16 41 H 0.01 0.38 7.57 -2.38 -0.02 0.36 16 42 H 0.27 15.46 8.31 -92.70 -0.77 14.68 16 43 H 0.11 3.42 6.41 -2.91 -0.02 3.40 16 Total: -1.00 -87.79 368.76 -0.98 -88.78 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -1.34 Total: 22.48 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 6.15 Total: 24.98 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.63 Total: -125.25 kcal Atomic # 8 Polarization: -57.26 SS G_CDS: -1.04 Total: -58.30 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -87.79 -0.98 -88.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426424474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.686 kcal (2) G-P(sol) polarization free energy of solvation -87.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds