Wall clock time and date at job start Tue Mar 31 2020 12:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42902 * 109.47313 * 2 1 4 4 C 1.35971 * 117.00088 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.98394 * 359.72801 * 4 3 2 6 6 C 1.38093 * 120.01138 * 179.72558 * 5 4 3 7 7 C 1.38851 * 119.98510 * 0.57060 * 6 5 4 8 8 N 1.40104 * 120.01278 * 179.68339 * 7 6 5 9 9 C 1.34779 * 119.99680 * 213.31913 * 8 7 6 10 10 O 1.21288 * 119.99932 * 5.27189 * 9 8 7 11 11 C 1.50706 * 119.99821 * 185.27618 * 9 8 7 12 12 N 1.46499 * 109.46913 * 179.97438 * 11 9 8 13 13 C 1.34781 * 119.99660 * 179.97438 * 12 11 9 14 14 O 1.21581 * 120.00272 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99499 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99475 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46805 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00310 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99835 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00348 * 359.97438 * 19 17 16 21 21 Si 1.86811 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47115 * 119.99959 * 21 19 17 24 24 H 1.48503 * 109.46741 * 240.00091 * 21 19 17 25 25 C 1.38846 * 119.96857 * 359.70263 * 7 6 5 26 26 C 1.38085 * 119.98693 * 0.02562 * 25 7 6 27 27 H 1.08998 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47371 * 300.00269 * 1 2 3 29 29 H 1.09001 * 109.46776 * 60.00071 * 1 2 3 30 30 H 1.09000 * 109.47371 * 239.99731 * 2 1 3 31 31 H 1.09005 * 109.47488 * 120.00072 * 2 1 3 32 32 H 1.07998 * 119.99413 * 359.97438 * 5 4 3 33 33 H 1.08004 * 120.00551 * 180.27206 * 6 5 4 34 34 H 0.97003 * 120.00371 * 33.31572 * 8 7 6 35 35 H 1.09002 * 109.47085 * 300.00050 * 11 9 8 36 36 H 1.08996 * 109.47081 * 59.99712 * 11 9 8 37 37 H 0.97001 * 119.99861 * 0.02562 * 12 11 9 38 38 H 0.96999 * 120.00596 * 0.02562 * 15 13 12 39 39 H 1.08996 * 109.47293 * 299.99540 * 16 15 13 40 40 H 1.08992 * 109.47152 * 60.00282 * 16 15 13 41 41 H 0.97006 * 120.00517 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.00582 * 179.97438 * 25 7 6 43 43 H 1.07998 * 119.99197 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 0.0005 5 6 4.1990 0.4250 0.0068 6 6 5.5681 0.6052 0.0016 7 6 6.0992 1.8882 0.0021 8 7 7.4881 2.0717 0.0036 9 6 8.0277 3.1269 0.6453 10 8 7.3218 3.8637 1.3010 11 6 9.5082 3.3914 0.5481 12 7 9.8430 4.5862 1.3269 13 6 11.1190 5.0162 1.3864 14 8 11.9922 4.4122 0.7940 15 7 11.4268 6.1157 2.1024 16 6 12.8139 6.5827 2.1675 17 6 12.8878 7.8194 3.0255 18 1 11.9911 8.2179 3.4769 19 6 14.0999 8.4427 3.2335 20 7 15.1916 7.9579 2.6835 21 14 14.1913 9.9761 4.2966 22 1 12.8338 10.3154 4.7939 23 1 15.0932 9.7261 5.4494 24 1 14.7195 11.1062 3.4908 25 6 5.2531 2.9891 0.0016 26 6 3.8842 2.8074 0.0011 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7858 -0.5728 0.0116 33 1 6.2257 -0.2516 0.0020 34 1 8.0615 1.4393 -0.4572 35 1 10.0568 2.5354 0.9413 36 1 9.7813 3.5498 -0.4951 37 1 9.1464 5.0674 1.8004 38 1 10.7302 6.5973 2.5753 39 1 13.4400 5.8027 2.6005 40 1 13.1663 6.8156 1.1628 41 1 16.0444 8.3962 2.8301 42 1 5.6655 3.9872 0.0025 43 1 3.2260 3.6637 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426432279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:00 Heat of formation + Delta-G solvation = -77.271837 kcal Electronic energy + Delta-G solvation = -25076.007346 eV Core-core repulsion = 21121.740472 eV Total energy + Delta-G solvation = -3954.266873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03024 -40.06244 -39.03754 -37.73385 -34.85128 -34.43355 -33.84095 -32.30476 -32.20535 -31.28191 -29.54750 -27.82417 -26.29938 -24.59975 -22.89735 -22.67068 -22.13309 -20.61207 -20.20248 -18.75514 -18.49777 -17.94015 -16.90900 -16.52941 -16.26019 -16.00668 -15.83466 -15.62239 -14.90512 -14.67829 -14.46110 -14.21984 -13.97569 -13.80442 -13.72513 -13.31411 -13.21715 -13.00082 -12.91417 -12.77499 -12.51131 -12.16942 -11.94700 -11.72321 -11.44036 -11.17449 -10.90901 -10.88754 -10.38174 -10.28015 -10.12459 -9.49226 -9.34001 -9.32765 -8.87937 -8.68786 -8.06350 -7.76232 -6.13264 -4.19415 0.95452 0.99370 2.24692 2.51140 2.81783 3.26546 3.33149 3.36273 3.44358 3.47055 3.90455 4.29009 4.35715 4.37299 4.42953 4.49227 4.59107 4.74232 4.87505 5.00615 5.10324 5.13966 5.22222 5.23109 5.29194 5.29956 5.35069 5.51508 5.60372 5.63075 5.94513 5.95415 6.11610 6.49590 6.65761 7.01648 7.05112 7.12074 7.51452 7.57417 7.58635 7.73356 7.91721 8.05844 8.78372 8.93640 9.31442 9.49058 10.97032 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034254 B = 0.001685 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.231938 B =16617.948795 C =17297.010450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.317 6.317 4 C 0.114 3.886 5 C -0.190 4.190 6 C -0.104 4.104 7 C 0.112 3.888 8 N -0.670 5.670 9 C 0.511 3.489 10 O -0.516 6.516 11 C 0.127 3.873 12 N -0.749 5.749 13 C 0.697 3.303 14 O -0.603 6.603 15 N -0.726 5.726 16 C 0.266 3.734 17 C -0.541 4.541 18 H 0.064 0.936 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.079 4.079 26 C -0.131 4.131 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.414 0.586 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.404 0.596 38 H 0.388 0.612 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.143 0.857 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.230 -18.718 -7.620 33.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.068 3.932 5 C -0.210 4.210 6 C -0.125 4.125 7 C 0.018 3.982 8 N -0.317 5.317 9 C 0.299 3.701 10 O -0.390 6.390 11 C -0.002 4.002 12 N -0.410 5.410 13 C 0.396 3.604 14 O -0.482 6.482 15 N -0.377 5.377 16 C 0.145 3.855 17 C -0.580 4.580 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.524 5.524 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.099 4.099 26 C -0.150 4.150 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.250 0.750 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.240 0.760 38 H 0.221 0.779 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.161 0.839 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.770 -18.500 -7.697 33.439 hybrid contribution -0.088 0.572 0.761 0.956 sum -26.858 -17.928 -6.936 33.029 Atomic orbital electron populations 1.21777 0.92715 1.02876 1.03618 1.22778 0.95933 0.82043 1.01358 1.86092 1.18982 1.29205 1.88824 1.18978 0.82310 0.94082 0.97783 1.21006 0.93462 0.98166 1.08315 1.20674 0.94864 0.95444 1.01488 1.17621 0.82782 0.93672 1.04088 1.43393 1.05575 1.28502 1.54196 1.20955 0.90954 0.80222 0.78005 1.90719 1.62599 1.46576 1.39126 1.20703 0.89827 0.90808 0.98892 1.44824 1.09182 1.30472 1.56513 1.16028 0.81629 0.81927 0.80791 1.90871 1.47039 1.59391 1.50902 1.45703 1.13227 1.27074 1.51734 1.19016 0.74950 0.94108 0.97413 1.21281 0.94396 1.10780 1.31501 0.91819 1.24937 0.95333 0.97806 0.95924 1.69986 0.98881 1.40106 1.43383 0.86356 0.78201 0.82359 0.79961 1.19636 1.20830 1.20830 1.21014 0.91803 0.99221 0.97873 1.20344 0.94664 0.94998 1.05026 0.90366 0.91452 0.91485 0.92048 0.92039 0.85163 0.85242 0.74966 0.88500 0.88342 0.75981 0.77912 0.95633 0.95615 0.92542 0.83923 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 10.28 37.15 0.38 -0.24 16 2 C 0.05 0.30 5.46 37.15 0.20 0.50 16 3 O -0.32 -2.82 10.14 -19.65 -0.20 -3.02 16 4 C 0.11 1.07 6.69 -39.22 -0.26 0.80 16 5 C -0.19 -1.48 9.03 -39.45 -0.36 -1.84 16 6 C -0.10 -0.81 9.96 -39.41 -0.39 -1.20 16 7 C 0.11 1.06 6.28 -83.62 -0.53 0.54 16 8 N -0.67 -5.54 5.35 -9.83 -0.05 -5.59 16 9 C 0.51 5.66 7.64 -10.98 -0.08 5.57 16 10 O -0.52 -7.27 13.35 5.55 0.07 -7.20 16 11 C 0.13 1.51 6.16 -5.19 -0.03 1.48 16 12 N -0.75 -11.68 5.53 -66.41 -0.37 -12.05 16 13 C 0.70 14.44 8.57 -86.91 -0.74 13.70 16 14 O -0.60 -14.66 16.34 5.29 0.09 -14.57 16 15 N -0.73 -15.86 5.55 -66.42 -0.37 -16.23 16 16 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 17 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 18 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.08 -0.84 8.65 -39.41 -0.34 -1.18 16 26 C -0.13 -1.30 9.98 -39.46 -0.39 -1.70 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 31 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 32 H 0.13 0.71 6.29 -52.49 -0.33 0.38 16 33 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.41 2.04 8.82 -40.82 -0.36 1.68 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.40 5.88 7.45 -40.82 -0.30 5.58 16 38 H 0.39 7.43 8.34 -40.82 -0.34 7.09 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 42 H 0.14 1.65 6.41 -52.49 -0.34 1.31 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -35.64 370.90 -8.32 -43.96 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -5.80 Total: 8.52 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -2.99 Total: 10.04 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.05 Total: -59.40 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.04 Total: -24.79 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.64 -8.32 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.316 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds