Wall clock time and date at job start Tue Mar 31 2020 12:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42902 * 109.47313 * 2 1 4 4 C 1.35971 * 117.00088 * 179.97438 * 3 2 1 5 5 C 1.38725 * 119.98394 * 359.72801 * 4 3 2 6 6 C 1.38093 * 120.01138 * 179.72558 * 5 4 3 7 7 C 1.38851 * 119.98510 * 0.57060 * 6 5 4 8 8 N 1.40104 * 120.01278 * 179.68339 * 7 6 5 9 9 C 1.34779 * 119.99680 * 213.31913 * 8 7 6 10 10 O 1.21288 * 119.99932 * 5.27189 * 9 8 7 11 11 C 1.50706 * 119.99821 * 185.27618 * 9 8 7 12 12 N 1.46499 * 109.46913 * 179.97438 * 11 9 8 13 13 C 1.34781 * 119.99660 * 179.97438 * 12 11 9 14 14 O 1.21581 * 120.00272 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99499 * 179.97438 * 13 12 11 16 16 C 1.46504 * 119.99475 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46805 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00310 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99835 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00348 * 359.97438 * 19 17 16 21 21 Si 1.86811 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46989 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47115 * 119.99959 * 21 19 17 24 24 H 1.48503 * 109.46741 * 240.00091 * 21 19 17 25 25 C 1.38846 * 119.96857 * 359.70263 * 7 6 5 26 26 C 1.38085 * 119.98693 * 0.02562 * 25 7 6 27 27 H 1.08998 * 109.47378 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47371 * 300.00269 * 1 2 3 29 29 H 1.09001 * 109.46776 * 60.00071 * 1 2 3 30 30 H 1.09000 * 109.47371 * 239.99731 * 2 1 3 31 31 H 1.09005 * 109.47488 * 120.00072 * 2 1 3 32 32 H 1.07998 * 119.99413 * 359.97438 * 5 4 3 33 33 H 1.08004 * 120.00551 * 180.27206 * 6 5 4 34 34 H 0.97003 * 120.00371 * 33.31572 * 8 7 6 35 35 H 1.09002 * 109.47085 * 300.00050 * 11 9 8 36 36 H 1.08996 * 109.47081 * 59.99712 * 11 9 8 37 37 H 0.97001 * 119.99861 * 0.02562 * 12 11 9 38 38 H 0.96999 * 120.00596 * 0.02562 * 15 13 12 39 39 H 1.08996 * 109.47293 * 299.99540 * 16 15 13 40 40 H 1.08992 * 109.47152 * 60.00282 * 16 15 13 41 41 H 0.97006 * 120.00517 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.00582 * 179.97438 * 25 7 6 43 43 H 1.07998 * 119.99197 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 0.0005 5 6 4.1990 0.4250 0.0068 6 6 5.5681 0.6052 0.0016 7 6 6.0992 1.8882 0.0021 8 7 7.4881 2.0717 0.0036 9 6 8.0277 3.1269 0.6453 10 8 7.3218 3.8637 1.3010 11 6 9.5082 3.3914 0.5481 12 7 9.8430 4.5862 1.3269 13 6 11.1190 5.0162 1.3864 14 8 11.9922 4.4122 0.7940 15 7 11.4268 6.1157 2.1024 16 6 12.8139 6.5827 2.1675 17 6 12.8878 7.8194 3.0255 18 1 11.9911 8.2179 3.4769 19 6 14.0999 8.4427 3.2335 20 7 15.1916 7.9579 2.6835 21 14 14.1913 9.9761 4.2966 22 1 12.8338 10.3154 4.7939 23 1 15.0932 9.7261 5.4494 24 1 14.7195 11.1062 3.4908 25 6 5.2531 2.9891 0.0016 26 6 3.8842 2.8074 0.0011 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.7858 -0.5728 0.0116 33 1 6.2257 -0.2516 0.0020 34 1 8.0615 1.4393 -0.4572 35 1 10.0568 2.5354 0.9413 36 1 9.7813 3.5498 -0.4951 37 1 9.1464 5.0674 1.8004 38 1 10.7302 6.5973 2.5753 39 1 13.4400 5.8027 2.6005 40 1 13.1663 6.8156 1.1628 41 1 16.0444 8.3962 2.8301 42 1 5.6655 3.9872 0.0025 43 1 3.2260 3.6637 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426432279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:59 Heat of formation + Delta-G solvation = -104.600531 kcal Electronic energy + Delta-G solvation = -25077.192407 eV Core-core repulsion = 21121.740472 eV Total energy + Delta-G solvation = -3955.451934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85038 -40.98829 -40.42584 -38.48826 -36.24704 -35.63663 -35.39176 -34.29846 -32.70245 -31.91605 -30.55847 -29.30973 -27.73764 -25.16545 -24.59701 -23.41617 -23.04432 -21.84090 -21.42773 -20.04551 -19.33874 -18.86411 -18.22887 -17.56296 -17.32489 -17.14326 -16.99516 -16.62302 -16.42599 -16.11332 -15.70912 -15.30534 -14.88017 -14.68492 -14.54073 -14.36068 -14.26344 -14.18962 -14.00063 -13.82730 -13.54401 -13.21339 -13.15121 -12.86420 -12.73617 -12.66506 -12.21278 -11.94772 -11.73058 -11.43590 -11.31411 -11.22674 -10.87762 -10.80161 -10.34964 -10.02309 -9.62607 -8.75352 -8.27183 -6.42828 0.24211 0.31769 1.39254 1.43822 1.45664 1.51434 1.60012 2.15847 2.21277 2.30187 2.41668 2.76283 3.07986 3.44107 3.56269 3.81204 3.90134 4.08676 4.15176 4.24912 4.33195 4.35354 4.39712 4.40035 4.55194 4.69467 4.96006 4.98291 4.99498 5.08153 5.20760 5.25845 5.30236 5.33187 5.37170 5.39272 5.50434 5.66015 5.80524 5.86614 6.19936 6.29470 6.46063 6.68564 6.95641 7.23113 7.27677 7.67451 8.85211 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034254 B = 0.001685 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.231938 B =16617.948795 C =17297.010450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.106 3.894 5 C -0.188 4.188 6 C -0.095 4.095 7 C 0.095 3.905 8 N -0.651 5.651 9 C 0.519 3.481 10 O -0.549 6.549 11 C 0.123 3.877 12 N -0.731 5.731 13 C 0.698 3.302 14 O -0.640 6.640 15 N -0.723 5.723 16 C 0.284 3.716 17 C -0.556 4.556 18 H 0.081 0.919 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.984 3.016 22 H -0.256 1.256 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.096 4.096 26 C -0.149 4.149 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.432 0.568 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.411 0.589 38 H 0.403 0.597 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.800 -19.907 -7.171 35.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.030 4.030 3 O -0.250 6.250 4 C 0.061 3.939 5 C -0.207 4.207 6 C -0.115 4.115 7 C 0.002 3.998 8 N -0.298 5.298 9 C 0.306 3.694 10 O -0.426 6.426 11 C -0.005 4.005 12 N -0.391 5.391 13 C 0.397 3.603 14 O -0.522 6.522 15 N -0.377 5.377 16 C 0.161 3.839 17 C -0.594 4.594 18 H 0.099 0.901 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.807 3.193 22 H -0.180 1.180 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.116 4.116 26 C -0.168 4.168 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.271 0.729 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.249 0.751 38 H 0.238 0.762 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.424 -19.746 -7.271 35.365 hybrid contribution 0.281 0.804 0.549 1.013 sum -28.144 -18.942 -6.722 34.584 Atomic orbital electron populations 1.21814 0.91880 1.04134 1.03025 1.23076 0.96686 0.80728 1.02503 1.86080 1.18761 1.31436 1.88736 1.19124 0.82924 0.94261 0.97614 1.21342 0.93361 0.98929 1.07021 1.21003 0.95325 0.95505 0.99632 1.17770 0.82822 0.94197 1.05046 1.43154 1.05569 1.27823 1.53253 1.20697 0.90192 0.80551 0.77921 1.90719 1.63055 1.47961 1.40903 1.20939 0.90784 0.89644 0.99094 1.44624 1.07264 1.31196 1.56050 1.16083 0.82757 0.81295 0.80120 1.90843 1.48697 1.60389 1.52320 1.45329 1.11784 1.27929 1.52615 1.18458 0.76995 0.93330 0.95087 1.21638 0.95308 1.10871 1.31570 0.90127 1.26004 0.94758 1.01396 0.97175 1.70132 0.99712 1.41981 1.44910 0.85122 0.78853 0.77531 0.77753 1.18009 1.20365 1.20384 1.20956 0.92399 0.99046 0.99168 1.20413 0.94604 0.95790 1.05996 0.88157 0.92173 0.91968 0.90635 0.90999 0.82444 0.82116 0.72868 0.87028 0.87074 0.75093 0.76175 0.99176 0.99178 0.92215 0.85657 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 71.98 0.74 -0.26 16 2 C 0.04 0.40 5.46 71.98 0.39 0.79 16 3 O -0.34 -5.68 10.14 -93.23 -0.95 -6.62 16 4 C 0.11 1.89 6.69 22.50 0.15 2.04 16 5 C -0.19 -2.45 9.03 22.35 0.20 -2.24 16 6 C -0.09 -1.20 9.96 22.38 0.22 -0.98 16 7 C 0.10 1.67 6.28 38.11 0.24 1.91 16 8 N -0.65 -9.59 5.35 -303.39 -1.62 -11.21 16 9 C 0.52 10.91 7.64 87.66 0.67 11.58 16 10 O -0.55 -15.33 13.35 -3.06 -0.04 -15.37 16 11 C 0.12 2.77 6.16 85.64 0.53 3.30 16 12 N -0.73 -22.34 5.53 -482.29 -2.67 -25.01 16 13 C 0.70 29.11 8.57 179.05 1.53 30.64 16 14 O -0.64 -31.68 16.34 -3.97 -0.06 -31.74 16 15 N -0.72 -32.01 5.55 -482.31 -2.68 -34.69 16 16 C 0.28 15.87 5.43 85.63 0.46 16.33 16 17 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 18 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 21 Si 0.98 42.92 29.54 68.60 2.03 44.95 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 C -0.10 -2.05 8.65 22.38 0.19 -1.86 16 26 C -0.15 -3.01 9.98 22.35 0.22 -2.79 16 27 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.46 7.67 -2.39 -0.02 0.44 16 31 H 0.07 0.49 7.65 -2.38 -0.02 0.48 16 32 H 0.16 1.13 6.29 -2.91 -0.02 1.11 16 33 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.43 3.12 8.82 -92.71 -0.82 2.30 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.25 16 36 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.41 11.67 7.45 -92.71 -0.69 10.98 16 38 H 0.40 15.28 8.34 -92.71 -0.77 14.51 16 39 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 42 H 0.13 3.06 6.41 -2.91 -0.02 3.04 16 43 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -79.10 370.90 -0.66 -79.76 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -1.21 Total: 27.01 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 6.26 Total: 28.75 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -6.68 Total: -126.73 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -1.05 Total: -53.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -79.10 -0.66 -79.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.842 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds