Wall clock time and date at job start Tue Mar 31 2020 13:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99491 * 2 1 4 4 C 1.50702 * 109.46938 * 269.99885 * 3 2 1 5 5 H 1.07997 * 120.00161 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99565 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00562 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99814 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46880 * 90.00186 * 8 6 4 10 10 H 1.48504 * 109.47219 * 210.00085 * 8 6 4 11 11 H 1.48499 * 109.46985 * 330.00408 * 8 6 4 12 12 C 1.34774 * 120.00437 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00066 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99833 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.46994 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.46947 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 15 19 19 O 1.21279 * 119.99507 * 0.02562 * 18 17 16 20 20 C 1.47011 * 120.00202 * 179.97438 * 18 17 16 21 21 C 1.39945 * 120.14559 * 359.73171 * 20 18 17 22 22 C 1.37739 * 119.85306 * 179.73940 * 21 20 18 23 23 C 1.38721 * 120.14563 * 0.53643 * 22 21 20 24 24 F 1.35095 * 119.85396 * 179.69986 * 23 22 21 25 25 C 1.38718 * 120.29097 * 359.71004 * 23 22 21 26 26 C 1.37742 * 120.14864 * 0.03517 * 25 23 22 27 27 H 1.08995 * 109.46998 * 269.99718 * 1 2 3 28 28 H 1.08994 * 109.47553 * 29.99768 * 1 2 3 29 29 H 1.09001 * 109.46966 * 149.99944 * 1 2 3 30 30 H 1.08998 * 109.46909 * 30.00249 * 3 2 1 31 31 H 1.08999 * 109.46568 * 150.00546 * 3 2 1 32 32 H 0.96994 * 120.00343 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.46836 * 59.99586 * 14 12 2 34 34 H 1.09001 * 109.46547 * 299.99940 * 14 12 2 35 35 H 1.08992 * 109.47056 * 59.99637 * 15 14 12 36 36 H 1.08996 * 109.46698 * 299.99753 * 15 14 12 37 37 H 1.09001 * 109.47372 * 59.99964 * 16 15 14 38 38 H 1.09004 * 109.47108 * 299.99708 * 16 15 14 39 39 H 1.09001 * 109.46832 * 59.99979 * 17 16 15 40 40 H 1.09000 * 109.47611 * 300.00276 * 17 16 15 41 41 H 1.08003 * 120.06841 * 359.97438 * 21 20 18 42 42 H 1.08001 * 119.92728 * 180.24971 * 22 21 20 43 43 H 1.08007 * 119.92519 * 179.97438 * 25 23 22 44 44 H 1.08000 * 120.07524 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5548 3.6173 -0.6731 8 14 3.4374 3.4172 -3.4340 9 1 2.3075 4.2608 -3.8998 10 1 4.6981 4.1996 -3.4969 11 1 3.5536 2.2203 -4.3052 12 6 2.1390 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3798 -3.6352 -0.0014 16 6 1.6149 -4.9602 -0.0020 17 6 2.6092 -6.1230 -0.0024 18 6 1.8558 -7.4283 -0.0023 19 8 0.6430 -7.4282 -0.0024 20 6 2.5909 -8.7014 -0.0032 21 6 3.9903 -8.7049 -0.0098 22 6 4.6730 -9.9012 -0.0052 23 6 3.9764 -11.1008 -0.0052 24 9 4.6519 -12.2707 -0.0068 25 6 2.5892 -11.1044 -0.0038 26 6 1.8943 -9.9151 -0.0031 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6083 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 4.0322 4.4428 -0.8504 33 1 0.7592 -2.5294 -0.8919 34 1 0.7585 -2.5306 0.8881 35 1 3.0058 -3.5778 0.8890 36 1 3.0071 -3.5770 -0.8909 37 1 0.9886 -5.0179 -0.8922 38 1 0.9879 -5.0181 0.8878 39 1 3.2358 -6.0656 0.8877 40 1 3.2360 -6.0650 -0.8922 41 1 4.5338 -7.7715 -0.0147 42 1 5.7530 -9.9052 -0.0062 43 1 2.0528 -12.0418 -0.0043 44 1 0.8143 -9.9193 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426644533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:37 Heat of formation + Delta-G solvation = -111.087597 kcal Electronic energy + Delta-G solvation = -25053.327455 eV Core-core repulsion = 21077.674259 eV Total energy + Delta-G solvation = -3975.653196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.48853 -40.45763 -38.99158 -38.47696 -35.32688 -34.62625 -32.63445 -32.14623 -31.54431 -30.43497 -27.89936 -26.22798 -25.40846 -23.94024 -23.42751 -22.42907 -21.02824 -20.10863 -18.32928 -18.26348 -17.01664 -16.88459 -16.54993 -16.23398 -16.06059 -16.04475 -15.35515 -15.17429 -15.06718 -14.84275 -14.23241 -14.18425 -14.01825 -13.62936 -13.35561 -13.04084 -12.84261 -12.60231 -12.32194 -12.15659 -12.05927 -11.84870 -11.60688 -11.55788 -11.27976 -11.20067 -11.00467 -10.86016 -10.54474 -10.50735 -10.14476 -10.01816 -9.75427 -9.60890 -9.30391 -8.83205 -8.42671 -7.60143 -6.03174 -4.07883 0.02525 0.65676 1.90406 3.12424 3.30292 3.36641 3.40490 3.50793 3.53026 3.63277 4.04295 4.10175 4.27892 4.45493 4.59970 4.62599 4.69053 4.85574 4.86170 5.12582 5.29100 5.30869 5.31171 5.32161 5.38168 5.47672 5.50687 5.60209 5.63691 5.74964 5.77468 5.79562 5.94817 5.97159 5.97466 6.21690 6.24541 6.33471 6.47848 7.09079 7.16865 7.46624 7.57755 7.93552 8.25347 8.47122 8.92227 9.14852 9.57217 11.04834 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.001784 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.278965 B =15690.437980 C =16331.359035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.502 3.498 13 O -0.545 6.545 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.167 4.167 18 C 0.397 3.603 19 O -0.449 6.449 20 C -0.181 4.181 21 C -0.042 4.042 22 C -0.166 4.166 23 C 0.127 3.873 24 F -0.135 7.135 25 C -0.168 4.168 26 C -0.034 4.034 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 -28.182 2.915 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.337 5.337 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.288 3.712 13 O -0.424 6.424 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.204 4.204 18 C 0.275 3.725 19 O -0.324 6.324 20 C -0.182 4.182 21 C -0.060 4.060 22 C -0.185 4.185 23 C 0.108 3.892 24 F -0.113 7.113 25 C -0.187 4.187 26 C -0.052 4.052 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.370 -28.019 2.961 28.376 hybrid contribution 0.338 0.149 -0.996 1.062 sum -3.032 -27.870 1.965 28.104 Atomic orbital electron populations 1.21625 0.81517 1.02540 1.00340 1.48183 1.06150 1.07979 1.71430 1.19276 0.92560 0.78265 0.97434 1.21442 1.36378 1.06227 0.92349 0.92507 1.24949 0.95406 0.96430 0.97432 1.69932 1.38432 1.14356 1.30709 0.86495 0.77663 0.78569 0.84676 1.20660 1.21083 1.19915 1.20424 0.88154 0.85262 0.77315 1.90650 1.14021 1.87373 1.50306 1.21685 0.99345 0.93451 1.03461 1.21326 0.97490 0.91615 1.03682 1.21444 0.97366 0.92758 1.03220 1.22086 1.00396 0.92906 1.05053 1.22518 0.88969 0.89955 0.71073 1.90538 1.16124 1.89851 1.35852 1.20712 0.94518 0.95414 1.07538 1.21415 0.92895 0.98419 0.93274 1.21181 1.01465 0.90989 1.04879 1.18083 0.90279 0.81436 0.99411 1.91534 1.80316 1.46114 1.93336 1.21159 0.92248 1.00071 1.05171 1.21319 1.01076 0.90348 0.92464 0.93836 0.90908 0.92382 0.95120 0.93876 0.92742 0.89583 0.89766 0.91194 0.91072 0.91331 0.91356 0.87960 0.87920 0.83567 0.83874 0.84058 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.61 -12.97 2.86 -182.95 -0.52 -13.49 16 3 C 0.24 6.48 5.16 -5.19 -0.03 6.45 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.50 10.35 7.67 -10.98 -0.08 10.27 16 13 O -0.55 -13.60 15.56 5.55 0.09 -13.52 16 14 C -0.14 -1.98 4.25 -27.88 -0.12 -2.10 16 15 C -0.10 -1.30 4.50 -26.73 -0.12 -1.42 16 16 C -0.11 -1.10 4.50 -26.73 -0.12 -1.22 16 17 C -0.17 -1.29 4.31 -27.88 -0.12 -1.41 16 18 C 0.40 3.54 7.11 -30.75 -0.22 3.33 16 19 O -0.45 -5.33 15.97 5.56 0.09 -5.25 16 20 C -0.18 -1.37 5.87 -105.07 -0.62 -1.98 16 21 C -0.04 -0.25 9.47 -39.13 -0.37 -0.62 16 22 C -0.17 -1.00 10.01 -39.59 -0.40 -1.40 16 23 C 0.13 0.90 7.31 -39.23 -0.29 0.61 16 24 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 25 C -0.17 -1.09 10.01 -39.59 -0.40 -1.48 16 26 C -0.03 -0.25 9.59 -39.13 -0.38 -0.62 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.09 1.11 7.40 -51.93 -0.38 0.72 16 34 H 0.08 1.03 8.11 -51.93 -0.42 0.60 16 35 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.15 0.55 7.05 -52.48 -0.37 0.18 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.14 0.97 7.65 -52.49 -0.40 0.57 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -35.17 379.80 -8.40 -43.57 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.47 Total: -3.51 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.06 Total: -3.41 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.21 Total: -39.55 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.18 Total: -18.76 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.17 -8.40 -43.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426644533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.516 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds