Wall clock time and date at job start Tue Mar 31 2020 13:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99491 * 2 1 4 4 C 1.50702 * 109.46938 * 269.99885 * 3 2 1 5 5 H 1.07997 * 120.00161 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99565 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00562 * 0.02562 * 6 4 3 8 8 Si 1.86807 * 119.99814 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46880 * 90.00186 * 8 6 4 10 10 H 1.48504 * 109.47219 * 210.00085 * 8 6 4 11 11 H 1.48499 * 109.46985 * 330.00408 * 8 6 4 12 12 C 1.34774 * 120.00437 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00066 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99833 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.46994 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.46947 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 15 19 19 O 1.21279 * 119.99507 * 0.02562 * 18 17 16 20 20 C 1.47011 * 120.00202 * 179.97438 * 18 17 16 21 21 C 1.39945 * 120.14559 * 359.73171 * 20 18 17 22 22 C 1.37739 * 119.85306 * 179.73940 * 21 20 18 23 23 C 1.38721 * 120.14563 * 0.53643 * 22 21 20 24 24 F 1.35095 * 119.85396 * 179.69986 * 23 22 21 25 25 C 1.38718 * 120.29097 * 359.71004 * 23 22 21 26 26 C 1.37742 * 120.14864 * 0.03517 * 25 23 22 27 27 H 1.08995 * 109.46998 * 269.99718 * 1 2 3 28 28 H 1.08994 * 109.47553 * 29.99768 * 1 2 3 29 29 H 1.09001 * 109.46966 * 149.99944 * 1 2 3 30 30 H 1.08998 * 109.46909 * 30.00249 * 3 2 1 31 31 H 1.08999 * 109.46568 * 150.00546 * 3 2 1 32 32 H 0.96994 * 120.00343 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.46836 * 59.99586 * 14 12 2 34 34 H 1.09001 * 109.46547 * 299.99940 * 14 12 2 35 35 H 1.08992 * 109.47056 * 59.99637 * 15 14 12 36 36 H 1.08996 * 109.46698 * 299.99753 * 15 14 12 37 37 H 1.09001 * 109.47372 * 59.99964 * 16 15 14 38 38 H 1.09004 * 109.47108 * 299.99708 * 16 15 14 39 39 H 1.09001 * 109.46832 * 59.99979 * 17 16 15 40 40 H 1.09000 * 109.47611 * 300.00276 * 17 16 15 41 41 H 1.08003 * 120.06841 * 359.97438 * 21 20 18 42 42 H 1.08001 * 119.92728 * 180.24971 * 22 21 20 43 43 H 1.08007 * 119.92519 * 179.97438 * 25 23 22 44 44 H 1.08000 * 120.07524 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5548 3.6173 -0.6731 8 14 3.4374 3.4172 -3.4340 9 1 2.3075 4.2608 -3.8998 10 1 4.6981 4.1996 -3.4969 11 1 3.5536 2.2203 -4.3052 12 6 2.1390 -1.1671 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 6 2.3798 -3.6352 -0.0014 16 6 1.6149 -4.9602 -0.0020 17 6 2.6092 -6.1230 -0.0024 18 6 1.8558 -7.4283 -0.0023 19 8 0.6430 -7.4282 -0.0024 20 6 2.5909 -8.7014 -0.0032 21 6 3.9903 -8.7049 -0.0098 22 6 4.6730 -9.9012 -0.0052 23 6 3.9764 -11.1008 -0.0052 24 9 4.6519 -12.2707 -0.0068 25 6 2.5892 -11.1044 -0.0038 26 6 1.8943 -9.9151 -0.0031 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6083 2.0284 0.5139 31 1 3.1499 1.1385 0.5138 32 1 4.0322 4.4428 -0.8504 33 1 0.7592 -2.5294 -0.8919 34 1 0.7585 -2.5306 0.8881 35 1 3.0058 -3.5778 0.8890 36 1 3.0071 -3.5770 -0.8909 37 1 0.9886 -5.0179 -0.8922 38 1 0.9879 -5.0181 0.8878 39 1 3.2358 -6.0656 0.8877 40 1 3.2360 -6.0650 -0.8922 41 1 4.5338 -7.7715 -0.0147 42 1 5.7530 -9.9052 -0.0062 43 1 2.0528 -12.0418 -0.0043 44 1 0.8143 -9.9193 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426644533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:36 Heat of formation + Delta-G solvation = -131.231278 kcal Electronic energy + Delta-G solvation = -25054.200951 eV Core-core repulsion = 21077.674259 eV Total energy + Delta-G solvation = -3976.526692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.04495 -41.09551 -40.58492 -39.08590 -36.69651 -35.99928 -34.70982 -32.84920 -32.07751 -31.37588 -29.69148 -27.44511 -26.79462 -25.00310 -24.19322 -23.63329 -22.00538 -20.75739 -19.81773 -18.85111 -18.69351 -17.79854 -17.50532 -17.38045 -17.08390 -17.02335 -16.71689 -16.30787 -16.10399 -15.81384 -15.41167 -15.19669 -14.65526 -14.44483 -14.30545 -14.18040 -13.85556 -13.83515 -13.45029 -13.42929 -13.33857 -13.14519 -13.05320 -12.82265 -12.58722 -12.42932 -12.19814 -12.16695 -12.10421 -11.90381 -11.69708 -11.44022 -10.74352 -10.64194 -10.50178 -10.22054 -9.84385 -9.38374 -8.22113 -6.37406 -0.53157 0.19014 1.30121 1.36454 1.39377 1.49888 1.90734 2.34183 2.50182 2.60672 2.94598 3.06801 3.12957 3.64251 3.79250 3.84236 3.91341 4.07536 4.08934 4.18662 4.26223 4.38741 4.46979 4.55299 4.66326 4.73745 4.79943 4.83482 4.89849 4.91437 4.91630 4.98408 5.02541 5.05863 5.09838 5.16575 5.24679 5.27801 5.38354 5.52463 5.57825 5.73659 5.86441 6.06851 6.52451 6.70536 6.84085 7.28987 7.53864 8.84748 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023322 B = 0.001784 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.278965 B =15690.437980 C =16331.359035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.280 1.280 11 H -0.272 1.272 12 C 0.490 3.510 13 O -0.600 6.600 14 C -0.126 4.126 15 C -0.097 4.097 16 C -0.101 4.101 17 C -0.167 4.167 18 C 0.404 3.596 19 O -0.486 6.486 20 C -0.194 4.194 21 C -0.036 4.036 22 C -0.167 4.167 23 C 0.115 3.885 24 F -0.142 7.142 25 C -0.169 4.169 26 C -0.043 4.043 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.021 0.979 31 H -0.003 1.003 32 H 0.267 0.733 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 -29.367 1.991 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.346 5.346 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.279 3.721 13 O -0.482 6.482 14 C -0.166 4.166 15 C -0.135 4.135 16 C -0.138 4.138 17 C -0.204 4.204 18 C 0.284 3.716 19 O -0.363 6.363 20 C -0.195 4.195 21 C -0.053 4.053 22 C -0.185 4.185 23 C 0.096 3.904 24 F -0.120 7.120 25 C -0.188 4.188 26 C -0.061 4.061 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.039 0.961 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.188 0.812 42 H 0.180 0.820 43 H 0.173 0.827 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.053 -29.225 2.044 29.575 hybrid contribution 0.553 0.495 -0.651 0.987 sum -3.500 -28.730 1.394 28.976 Atomic orbital electron populations 1.21918 0.77968 1.03951 1.02503 1.48250 1.08404 1.06572 1.71413 1.18746 0.91094 0.80654 0.95988 1.21710 1.36796 1.06570 0.93054 0.92888 1.25900 0.94922 0.96446 1.02112 1.70054 1.38918 1.14814 1.33067 0.85388 0.78079 0.78213 0.78954 1.18849 1.20561 1.19698 1.21622 0.87963 0.86862 0.75614 1.90615 1.16707 1.88286 1.52569 1.21726 0.99373 0.89672 1.05817 1.21265 0.97169 0.92446 1.02640 1.21313 0.97444 0.91893 1.03193 1.22127 1.00116 0.91351 1.06789 1.22736 0.88481 0.90763 0.69638 1.90530 1.17537 1.90286 1.37960 1.20730 0.95279 0.94880 1.08644 1.21658 0.92222 0.99401 0.92067 1.21438 1.02506 0.90545 1.04048 1.18321 0.90620 0.81625 0.99881 1.91517 1.80444 1.46586 1.93461 1.21303 0.92273 1.00496 1.04710 1.21402 1.01224 0.90677 0.92813 0.91238 0.91840 0.88645 0.96109 0.98457 0.92399 0.87345 0.86823 0.92018 0.92501 0.91536 0.91213 0.86061 0.86265 0.81222 0.82015 0.82658 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.62 -26.33 2.86 -851.12 -2.43 -28.77 16 3 C 0.26 14.12 5.16 85.63 0.44 14.57 16 4 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.29 5.46 84.65 0.46 0.75 16 7 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 8 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.49 20.12 7.67 87.66 0.67 20.80 16 13 O -0.60 -30.83 15.56 -3.04 -0.05 -30.88 16 14 C -0.13 -3.30 4.25 29.85 0.13 -3.17 16 15 C -0.10 -2.29 4.50 30.59 0.14 -2.15 16 16 C -0.10 -1.77 4.50 30.59 0.14 -1.64 16 17 C -0.17 -2.19 4.31 29.85 0.13 -2.06 16 18 C 0.40 6.58 7.11 27.99 0.20 6.78 16 19 O -0.49 -11.11 15.97 -3.02 -0.05 -11.16 16 20 C -0.19 -2.65 5.87 -20.15 -0.12 -2.77 16 21 C -0.04 -0.34 9.47 22.57 0.21 -0.13 16 22 C -0.17 -1.67 10.01 22.27 0.22 -1.45 16 23 C 0.11 1.48 7.31 22.50 0.16 1.64 16 24 F -0.14 -2.09 17.26 44.97 0.78 -1.32 16 25 C -0.17 -2.03 10.01 22.27 0.22 -1.81 16 26 C -0.04 -0.59 9.59 22.56 0.22 -0.37 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 29 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 30 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 31 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.11 2.40 7.40 -2.39 -0.02 2.38 16 34 H 0.11 2.35 8.11 -2.39 -0.02 2.33 16 35 H 0.06 1.55 8.10 -2.39 -0.02 1.54 16 36 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.07 1.23 8.10 -2.38 -0.02 1.21 16 39 H 0.12 1.16 8.09 -2.39 -0.02 1.14 16 40 H 0.12 1.20 8.08 -2.39 -0.02 1.19 16 41 H 0.17 0.74 7.05 -2.91 -0.02 0.72 16 42 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 43 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.14 1.91 7.65 -2.91 -0.02 1.89 16 Total: -1.00 -79.58 379.80 6.33 -73.25 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.99 Total: 6.95 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 4.78 Total: 1.16 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.15 Total: -85.18 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.10 Total: -42.03 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -79.58 6.33 -73.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426644533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.982 kcal (2) G-P(sol) polarization free energy of solvation -79.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds