Wall clock time and date at job start Tue Mar 31 2020 13:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34897 * 117.00052 * 2 1 4 4 O 1.21624 * 120.00304 * 359.97438 * 3 2 1 5 5 C 1.46470 * 119.99751 * 179.97438 * 3 2 1 6 6 C 1.38019 * 126.17988 * 179.97438 * 5 3 2 7 7 C 1.40143 * 107.09954 * 180.02562 * 6 5 3 8 8 N 1.40788 * 126.11201 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99746 * 0.02562 * 8 7 6 10 10 O 1.21591 * 120.00267 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99559 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99602 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46602 * 184.79227 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81113 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31518 * 119.99808 * 355.41947 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48439 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14583 * 13 12 11 24 24 C 1.35926 * 107.77552 * 0.22910 * 7 6 5 25 25 N 1.35829 * 108.79004 * 359.62838 * 24 7 6 26 26 C 1.46505 * 125.65546 * 180.14787 * 25 24 7 27 27 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46968 * 300.00416 * 1 2 3 29 29 H 1.09007 * 109.46705 * 60.00077 * 1 2 3 30 30 H 1.08000 * 126.45032 * 359.97438 * 6 5 3 31 31 H 0.96996 * 119.99909 * 180.02562 * 8 7 6 32 32 H 0.97004 * 119.99767 * 359.97438 * 11 9 8 33 33 H 1.08993 * 109.47604 * 64.79661 * 12 11 9 34 34 H 1.09000 * 109.47101 * 304.78675 * 12 11 9 35 35 H 0.97001 * 119.99858 * 184.99726 * 17 16 14 36 36 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 37 37 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 38 38 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 39 39 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 40 40 H 1.07993 * 125.60444 * 179.77370 * 24 7 6 41 41 H 1.09004 * 109.46764 * 270.26810 * 26 25 24 42 42 H 1.08996 * 109.46550 * 30.26283 * 26 25 24 43 43 H 1.08998 * 109.47513 * 150.26677 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5272 1.2785 0.0006 6 6 4.2826 2.4336 0.0001 7 6 5.6291 2.0454 0.0004 8 7 6.7415 2.9084 -0.0004 9 6 6.5584 4.2437 -0.0010 10 8 5.4326 4.7030 -0.0004 11 7 7.6234 5.0698 -0.0023 12 6 7.4244 6.5212 -0.0024 13 6 8.7792 7.2216 -0.1245 14 6 9.7190 7.0262 1.0372 15 1 10.4674 6.2483 1.0014 16 6 9.6271 7.8441 2.1435 17 7 8.7810 8.8509 2.1484 18 14 10.7043 7.5220 3.6353 19 1 11.5641 6.3387 3.3788 20 1 11.5597 8.7081 3.8935 21 1 9.8459 7.2634 4.8191 22 6 9.3951 7.3301 -1.5209 23 6 8.8138 8.5727 -0.8416 24 6 5.6693 0.6867 -0.0043 25 7 4.3969 0.2114 0.0010 26 6 4.0134 -1.2026 0.0015 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 3.9067 3.4461 -0.0011 31 1 7.6396 2.5419 -0.0006 32 1 8.5215 4.7033 -0.0025 33 1 6.9425 6.8220 0.9278 34 1 6.7933 6.8014 -0.8458 35 1 8.7671 9.4691 2.8958 36 1 10.4800 7.2602 -1.5992 37 1 8.8350 6.9029 -2.3526 38 1 7.8716 8.9624 -1.2268 39 1 9.5162 9.3204 -0.4728 40 1 6.5655 0.0842 -0.0088 41 1 3.9185 -1.5536 -1.0261 42 1 4.7773 -1.7859 0.5155 43 1 3.0594 -1.3202 0.5153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431115640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:03 Heat of formation + Delta-G solvation = -30.050540 kcal Electronic energy + Delta-G solvation = -26436.865126 eV Core-core repulsion = 22484.645922 eV Total energy + Delta-G solvation = -3952.219204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.60842 -40.07846 -39.24695 -36.78433 -36.56457 -34.62700 -33.39611 -31.98929 -31.80131 -29.79609 -27.67150 -26.75424 -25.83076 -24.97643 -23.39646 -21.34154 -20.96777 -20.39027 -19.81942 -19.26186 -18.31499 -17.48390 -17.05270 -16.65265 -16.17592 -15.61929 -15.44443 -15.37959 -14.87848 -14.58891 -14.25738 -14.06575 -13.85926 -13.46700 -13.33477 -13.06811 -12.80840 -12.66826 -12.57994 -12.28385 -12.16161 -11.87692 -11.56420 -11.04256 -10.99794 -10.94235 -10.80483 -10.52342 -10.43280 -10.21286 -9.61335 -9.42093 -9.02442 -8.53561 -8.47770 -8.29355 -8.11918 -7.51720 -6.06229 -4.16066 1.13203 2.42056 2.52184 2.54188 3.11706 3.24440 3.25690 3.34917 3.35913 3.90088 4.35675 4.52222 4.62861 4.73887 4.82664 4.91393 4.92961 4.96251 5.20463 5.21759 5.27815 5.33548 5.41517 5.72680 5.93553 6.05941 6.13910 6.36689 6.44526 6.50735 6.60554 6.65208 6.73234 6.86721 6.99956 7.14600 7.20814 7.32407 7.42646 7.45919 7.60935 7.64447 7.82339 8.35176 8.58119 8.85371 9.13362 9.51102 11.00959 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002555 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.883565 B =10958.249911 C =11171.059384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.538 3.462 4 O -0.494 6.494 5 C -0.046 4.046 6 C -0.088 4.088 7 C 0.090 3.910 8 N -0.669 5.669 9 C 0.698 3.302 10 O -0.584 6.584 11 N -0.716 5.716 12 C 0.181 3.819 13 C 0.024 3.976 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.873 5.873 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.211 4.211 23 C -0.141 4.141 24 C -0.012 4.012 25 N -0.421 5.421 26 C 0.074 3.926 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.179 0.821 31 H 0.405 0.595 32 H 0.398 0.602 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.174 0.826 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 -22.020 -4.947 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.383 3.617 4 O -0.381 6.381 5 C -0.156 4.156 6 C -0.117 4.117 7 C -0.011 4.011 8 N -0.317 5.317 9 C 0.398 3.602 10 O -0.462 6.462 11 N -0.368 5.368 12 C 0.058 3.942 13 C 0.023 3.977 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.509 5.509 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.248 4.248 23 C -0.180 4.180 24 C -0.150 4.150 25 N -0.098 5.098 26 C -0.067 4.067 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.196 0.804 31 H 0.239 0.761 32 H 0.232 0.768 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.191 0.809 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.021 -21.433 -4.794 24.141 hybrid contribution 1.379 -0.398 0.894 1.691 sum -8.642 -21.831 -3.900 23.801 Atomic orbital electron populations 1.23258 0.76051 1.03512 1.02873 1.86577 1.23663 1.32942 1.85220 1.19766 0.86940 0.81615 0.73351 1.90935 1.65356 1.35687 1.46076 1.19292 0.86535 0.87601 1.22135 1.21834 0.90152 0.98321 1.01390 1.16615 0.87599 0.88369 1.08537 1.42026 1.07181 1.04318 1.78128 1.15966 0.85589 0.80127 0.78484 1.90814 1.22309 1.75330 1.57795 1.45147 1.07023 1.07433 1.77182 1.20906 0.97286 0.75665 1.00338 1.19056 0.92667 0.96076 0.89926 1.20373 1.16425 1.17691 0.99202 0.92193 1.24998 0.94920 0.95064 0.98159 1.70000 1.35368 1.14096 1.31476 0.86578 0.80246 0.78212 0.83170 1.19775 1.21079 1.20949 1.23017 0.99178 1.05479 0.97134 1.22468 1.00385 0.91866 1.03241 1.21257 0.87473 0.92968 1.13263 1.43628 1.04962 1.06096 1.55155 1.22203 1.03119 0.77718 1.03709 0.88139 0.91738 0.91752 0.80389 0.76108 0.76850 0.91504 0.94149 0.92906 0.90451 0.91689 0.91755 0.89519 0.80930 0.90660 0.89690 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.37 -3.76 7.98 -41.03 -0.33 -4.09 16 3 C 0.54 7.53 7.92 34.05 0.27 7.80 16 4 O -0.49 -8.45 16.68 -19.36 -0.32 -8.78 16 5 C -0.05 -0.65 6.88 -82.01 -0.56 -1.21 16 6 C -0.09 -1.48 9.44 -38.95 -0.37 -1.85 16 7 C 0.09 1.30 6.91 -83.85 -0.58 0.73 16 8 N -0.67 -9.73 5.48 -14.38 -0.08 -9.81 16 9 C 0.70 13.31 8.54 -86.91 -0.74 12.57 16 10 O -0.58 -13.30 13.51 5.29 0.07 -13.23 16 11 N -0.72 -13.68 5.48 -65.22 -0.36 -14.04 16 12 C 0.18 4.10 5.50 -4.04 -0.02 4.08 16 13 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 14 C -0.50 -12.68 8.59 -34.44 -0.30 -12.97 16 15 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 16 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 17 N -0.87 -24.21 12.65 55.43 0.70 -23.51 16 18 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.21 -4.36 9.96 -26.69 -0.27 -4.62 16 23 C -0.14 -3.24 9.14 -26.69 -0.24 -3.48 16 24 C -0.01 -0.13 11.42 -16.61 -0.19 -0.32 16 25 N -0.42 -4.50 3.17 -120.04 -0.38 -4.88 16 26 C 0.07 0.46 10.56 59.85 0.63 1.09 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.18 3.59 5.97 -52.49 -0.31 3.27 16 31 H 0.40 4.35 8.84 -40.82 -0.36 3.99 16 32 H 0.40 6.77 8.34 -40.82 -0.34 6.43 16 33 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.62 6.14 -51.93 -0.32 0.30 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -33.58 371.13 -7.70 -41.28 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.95 Total: 10.71 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.63 Total: 5.29 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.12 Total: -52.23 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.58 Total: -26.10 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.58 -7.70 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431115640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.226 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds