Wall clock time and date at job start Tue Mar 31 2020 13:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34897 * 117.00052 * 2 1 4 4 O 1.21624 * 120.00304 * 359.97438 * 3 2 1 5 5 C 1.46470 * 119.99751 * 179.97438 * 3 2 1 6 6 C 1.38019 * 126.17988 * 179.97438 * 5 3 2 7 7 C 1.40143 * 107.09954 * 180.02562 * 6 5 3 8 8 N 1.40788 * 126.11201 * 179.97438 * 7 6 5 9 9 C 1.34780 * 119.99746 * 0.02562 * 8 7 6 10 10 O 1.21591 * 120.00267 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99559 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99602 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46602 * 184.79227 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81113 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31518 * 119.99808 * 355.41947 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48439 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14583 * 13 12 11 24 24 C 1.35926 * 107.77552 * 0.22910 * 7 6 5 25 25 N 1.35829 * 108.79004 * 359.62838 * 24 7 6 26 26 C 1.46505 * 125.65546 * 180.14787 * 25 24 7 27 27 H 1.09001 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46968 * 300.00416 * 1 2 3 29 29 H 1.09007 * 109.46705 * 60.00077 * 1 2 3 30 30 H 1.08000 * 126.45032 * 359.97438 * 6 5 3 31 31 H 0.96996 * 119.99909 * 180.02562 * 8 7 6 32 32 H 0.97004 * 119.99767 * 359.97438 * 11 9 8 33 33 H 1.08993 * 109.47604 * 64.79661 * 12 11 9 34 34 H 1.09000 * 109.47101 * 304.78675 * 12 11 9 35 35 H 0.97001 * 119.99858 * 184.99726 * 17 16 14 36 36 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 37 37 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 38 38 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 39 39 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 40 40 H 1.07993 * 125.60444 * 179.77370 * 24 7 6 41 41 H 1.09004 * 109.46764 * 270.26810 * 26 25 24 42 42 H 1.08996 * 109.46550 * 30.26283 * 26 25 24 43 43 H 1.08998 * 109.47513 * 150.26677 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 -0.0005 5 6 3.5272 1.2785 0.0006 6 6 4.2826 2.4336 0.0001 7 6 5.6291 2.0454 0.0004 8 7 6.7415 2.9084 -0.0004 9 6 6.5584 4.2437 -0.0010 10 8 5.4326 4.7030 -0.0004 11 7 7.6234 5.0698 -0.0023 12 6 7.4244 6.5212 -0.0024 13 6 8.7792 7.2216 -0.1245 14 6 9.7190 7.0262 1.0372 15 1 10.4674 6.2483 1.0014 16 6 9.6271 7.8441 2.1435 17 7 8.7810 8.8509 2.1484 18 14 10.7043 7.5220 3.6353 19 1 11.5641 6.3387 3.3788 20 1 11.5597 8.7081 3.8935 21 1 9.8459 7.2634 4.8191 22 6 9.3951 7.3301 -1.5209 23 6 8.8138 8.5727 -0.8416 24 6 5.6693 0.6867 -0.0043 25 7 4.3969 0.2114 0.0010 26 6 4.0134 -1.2026 0.0015 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 3.9067 3.4461 -0.0011 31 1 7.6396 2.5419 -0.0006 32 1 8.5215 4.7033 -0.0025 33 1 6.9425 6.8220 0.9278 34 1 6.7933 6.8014 -0.8458 35 1 8.7671 9.4691 2.8958 36 1 10.4800 7.2602 -1.5992 37 1 8.8350 6.9029 -2.3526 38 1 7.8716 8.9624 -1.2268 39 1 9.5162 9.3204 -0.4728 40 1 6.5655 0.0842 -0.0088 41 1 3.9185 -1.5536 -1.0261 42 1 4.7773 -1.7859 0.5155 43 1 3.0594 -1.3202 0.5153 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431115640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:03 Heat of formation + Delta-G solvation = -52.875205 kcal Electronic energy + Delta-G solvation = -26437.854878 eV Core-core repulsion = 22484.645922 eV Total energy + Delta-G solvation = -3953.208956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.62614 -41.19416 -40.60310 -38.54423 -37.57395 -35.88015 -35.02484 -33.93189 -32.82981 -30.79512 -28.50829 -28.12948 -27.30547 -26.50016 -24.42283 -22.95969 -22.36712 -21.47966 -21.28980 -20.85389 -19.39255 -18.88583 -18.07245 -17.90527 -17.58403 -16.78055 -16.70422 -16.47119 -16.44564 -15.98001 -15.66906 -15.50430 -15.06559 -14.78746 -14.43721 -14.34461 -14.14658 -13.88088 -13.47084 -13.45181 -13.26677 -13.21702 -12.89799 -12.84953 -12.84245 -12.30067 -11.99108 -11.91324 -11.88876 -11.62223 -11.37890 -11.09442 -10.91658 -10.42445 -10.06529 -9.87752 -9.53890 -8.61279 -8.06570 -6.20743 0.09016 1.43042 1.44322 1.46783 1.50295 1.55487 1.55923 1.96122 2.07280 2.44523 2.49017 3.21745 3.33581 3.62091 3.73328 4.01050 4.14632 4.27431 4.29110 4.31540 4.39389 4.54717 4.58847 4.66428 4.68338 4.73372 4.77106 4.86734 4.91268 5.02390 5.05558 5.18822 5.23708 5.32032 5.57921 5.61795 5.65755 5.75883 5.81472 5.92884 6.21527 6.25203 6.39514 6.62531 6.87482 7.23701 7.49024 7.67965 9.00703 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.002555 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.883565 B =10958.249911 C =11171.059384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.540 3.460 4 O -0.540 6.540 5 C -0.061 4.061 6 C -0.130 4.130 7 C 0.051 3.949 8 N -0.647 5.647 9 C 0.694 3.306 10 O -0.628 6.628 11 N -0.708 5.708 12 C 0.200 3.800 13 C 0.004 3.996 14 C -0.500 4.500 15 H 0.068 0.932 16 C 0.021 3.979 17 N -0.910 5.910 18 Si 0.951 3.049 19 H -0.257 1.257 20 H -0.285 1.285 21 H -0.292 1.292 22 C -0.174 4.174 23 C -0.155 4.155 24 C 0.036 3.964 25 N -0.404 5.404 26 C 0.063 3.937 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.426 0.574 32 H 0.410 0.590 33 H 0.022 0.978 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.230 0.770 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 -26.651 -5.437 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.388 3.612 4 O -0.430 6.430 5 C -0.173 4.173 6 C -0.160 4.160 7 C -0.049 4.049 8 N -0.296 5.296 9 C 0.394 3.606 10 O -0.510 6.510 11 N -0.362 5.362 12 C 0.075 3.925 13 C 0.003 3.997 14 C -0.538 4.538 15 H 0.086 0.914 16 C -0.180 4.180 17 N -0.547 5.547 18 Si 0.777 3.223 19 H -0.181 1.181 20 H -0.211 1.211 21 H -0.218 1.218 22 C -0.211 4.211 23 C -0.194 4.194 24 C -0.103 4.103 25 N -0.079 5.079 26 C -0.076 4.076 27 H 0.162 0.838 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.264 0.736 32 H 0.246 0.754 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.246 0.754 41 H 0.113 0.887 42 H 0.140 0.860 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.241 -26.186 -5.297 27.958 hybrid contribution 0.746 0.877 1.009 1.531 sum -7.496 -25.309 -4.288 26.742 Atomic orbital electron populations 1.23619 0.74204 1.06162 1.02461 1.86573 1.25338 1.30528 1.84343 1.19859 0.87054 0.81973 0.72358 1.90908 1.66305 1.37408 1.48411 1.19084 0.86942 0.88157 1.23075 1.21526 0.92454 0.97458 1.04545 1.16845 0.86372 0.90051 1.11637 1.41618 1.08513 1.02508 1.76970 1.16137 0.84650 0.81592 0.78244 1.90823 1.24043 1.76594 1.59509 1.44839 1.07760 1.06076 1.77531 1.20422 0.96595 0.77756 0.97756 1.19071 0.92841 0.96622 0.91191 1.20711 1.16271 1.17167 0.99614 0.91393 1.25751 0.96302 0.95087 1.00843 1.70135 1.37228 1.15223 1.32148 0.85616 0.78627 0.78426 0.79606 1.18078 1.21148 1.21827 1.22996 0.99808 1.02445 0.95886 1.22393 1.00474 0.91975 1.04532 1.21986 0.88779 0.91491 1.08090 1.44021 1.04419 1.07191 1.52270 1.22641 1.04461 0.74913 1.05550 0.83810 0.92295 0.92205 0.85159 0.73599 0.75378 0.95943 0.94734 0.93332 0.89410 0.89485 0.91504 0.91612 0.75378 0.88729 0.85974 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 113.37 1.20 1.58 16 2 O -0.35 -6.75 7.98 -58.12 -0.46 -7.22 16 3 C 0.54 15.49 7.92 69.97 0.55 16.05 16 4 O -0.54 -19.84 16.68 19.43 0.32 -19.52 16 5 C -0.06 -1.74 6.88 40.32 0.28 -1.46 16 6 C -0.13 -4.62 9.44 22.68 0.21 -4.41 16 7 C 0.05 1.41 6.91 37.63 0.26 1.67 16 8 N -0.65 -18.13 5.48 -317.68 -1.74 -19.88 16 9 C 0.69 27.10 8.54 179.05 1.53 28.63 16 10 O -0.63 -30.63 13.51 -4.00 -0.05 -30.68 16 11 N -0.71 -27.28 5.48 -478.52 -2.62 -29.90 16 12 C 0.20 9.35 5.50 86.38 0.48 9.82 16 13 C 0.00 0.17 1.47 -52.93 -0.08 0.09 16 14 C -0.50 -25.24 8.59 25.60 0.22 -25.02 16 15 H 0.07 3.26 7.82 -2.91 -0.02 3.23 16 16 C 0.02 1.09 5.43 84.66 0.46 1.55 16 17 N -0.91 -52.03 12.65 21.45 0.27 -51.76 16 18 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 C -0.17 -6.93 9.96 30.62 0.30 -6.63 16 23 C -0.16 -7.21 9.14 30.62 0.28 -6.93 16 24 C 0.04 0.61 11.42 83.54 0.95 1.57 16 25 N -0.40 -7.30 3.17 -533.69 -1.69 -8.99 16 26 C 0.06 0.48 10.56 127.77 1.35 1.83 16 27 H 0.14 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.13 5.90 5.97 -2.91 -0.02 5.88 16 31 H 0.43 7.96 8.84 -92.71 -0.82 7.14 16 32 H 0.41 13.47 8.34 -92.71 -0.77 12.70 16 33 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.03 1.63 8.09 -2.39 -0.02 1.61 16 35 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.07 3.30 8.14 -2.38 -0.02 3.28 16 40 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 41 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.10 0.83 6.14 -2.39 -0.01 0.82 16 Total: -1.00 -80.35 371.13 3.51 -76.84 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.54 Total: 28.54 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 8.00 Total: 18.33 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -5.79 Total: -110.52 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.19 Total: -57.42 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -80.35 3.51 -76.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431115640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.967 kcal (2) G-P(sol) polarization free energy of solvation -80.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds