Wall clock time and date at job start Tue Mar 31 2020 13:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35949 * 117.00042 * 2 1 4 4 C 1.38661 * 120.06626 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97079 * 179.70579 * 4 3 2 6 6 C 1.38267 * 120.09599 * 0.54821 * 5 4 3 7 7 C 1.50701 * 119.93476 * 179.72366 * 6 5 4 8 8 C 1.52997 * 109.47122 * 269.72545 * 7 6 5 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99855 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47299 * 184.79547 * 12 11 9 14 14 C 1.50704 * 115.54588 * 294.81766 * 13 12 11 15 15 H 1.07999 * 119.99785 * 95.20816 * 14 13 12 16 16 C 1.37877 * 119.99726 * 274.92551 * 14 13 12 17 17 N 1.31515 * 120.00084 * 355.41881 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 175.42113 * 16 14 13 19 19 H 1.48504 * 109.47025 * 89.99775 * 18 16 14 20 20 H 1.48493 * 109.47332 * 210.00070 * 18 16 14 21 21 H 1.48499 * 109.47076 * 330.00113 * 18 16 14 22 22 C 1.53001 * 117.49754 * 80.48183 * 13 12 11 23 23 C 1.52994 * 117.50156 * 149.14359 * 13 12 11 24 24 C 1.38254 * 120.12241 * 359.45284 * 6 5 4 25 25 C 1.38335 * 120.03134 * 0.27297 * 24 6 5 26 26 F 1.35103 * 120.04580 * 179.97438 * 25 24 6 27 27 H 1.08997 * 109.47064 * 59.99862 * 1 2 3 28 28 H 1.08999 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46889 * 299.99808 * 1 2 3 30 30 H 1.08001 * 120.01049 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.95263 * 180.29274 * 5 4 3 32 32 H 1.09001 * 109.46448 * 149.72687 * 7 6 5 33 33 H 1.08995 * 109.46980 * 29.73146 * 7 6 5 34 34 H 1.09003 * 109.46827 * 60.00709 * 8 7 6 35 35 H 1.09000 * 109.46857 * 300.00418 * 8 7 6 36 36 H 0.96999 * 119.99492 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47302 * 64.79393 * 12 11 9 38 38 H 1.09005 * 109.46853 * 304.79585 * 12 11 9 39 39 H 0.97004 * 120.00173 * 185.00091 * 17 16 14 40 40 H 1.09003 * 117.49648 * 214.99946 * 22 13 12 41 41 H 1.08991 * 117.50066 * 0.03054 * 22 13 12 42 42 H 1.08996 * 117.49909 * 359.97438 * 23 13 12 43 43 H 1.09006 * 117.50020 * 144.97002 * 23 13 12 44 44 H 1.08006 * 119.98085 * 180.25355 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3025 3.6776 0.0009 7 6 3.9851 5.0212 0.0013 8 6 4.2159 5.4764 -1.4410 9 6 4.8991 6.8197 -1.4405 10 8 5.1738 7.3599 -0.3900 11 7 5.2039 7.4211 -2.6075 12 6 5.8685 8.7266 -2.6071 13 6 5.9913 9.2370 -4.0442 14 6 6.8809 8.4237 -4.9489 15 1 6.4532 7.6629 -5.5850 16 6 8.2400 8.6550 -4.9687 17 7 8.7490 9.6439 -4.2668 18 14 9.3583 7.5638 -5.9923 19 1 9.4925 8.1341 -7.3569 20 1 10.6967 7.4887 -5.3534 21 1 8.7748 6.2012 -6.0805 22 6 4.7578 9.8919 -4.6691 23 6 5.9574 10.7510 -4.2616 24 6 4.0580 2.5198 0.0003 25 6 3.4333 1.2855 -0.0002 26 9 4.1713 0.1539 -0.0012 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2137 2.3200 0.0005 31 1 1.3342 4.5115 0.0119 32 1 4.9431 4.9417 0.5150 33 1 3.3563 5.7480 0.5155 34 1 3.2578 5.5559 -1.9547 35 1 4.8447 4.7495 -1.9552 36 1 4.9838 6.9891 -3.4477 37 1 6.8623 8.6283 -2.1703 38 1 5.2817 9.4328 -2.0196 39 1 9.6938 9.8524 -4.3369 40 1 4.5898 9.7348 -5.7346 41 1 3.8591 9.9597 -4.0562 42 1 5.8473 11.3836 -3.3809 43 1 6.5790 11.1591 -5.0587 44 1 5.1364 2.5790 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431136593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:01 Heat of formation + Delta-G solvation = -84.913282 kcal Electronic energy + Delta-G solvation = -25815.260315 eV Core-core repulsion = 21840.742122 eV Total energy + Delta-G solvation = -3974.518193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.94737 -40.37062 -39.21291 -38.03361 -36.70313 -33.51623 -33.29315 -31.98236 -31.00707 -29.70804 -27.81050 -26.42886 -25.34767 -23.84054 -23.05098 -21.36888 -21.12058 -19.72207 -19.21496 -18.60888 -17.23363 -17.11600 -16.60987 -16.42180 -16.02080 -15.30318 -15.27914 -15.09934 -14.96377 -14.66841 -14.52757 -14.33195 -13.91411 -13.39306 -13.21761 -12.91777 -12.65685 -12.61605 -12.42296 -12.15325 -11.76345 -11.68283 -11.56699 -11.37583 -11.18529 -11.01785 -10.98383 -10.93117 -10.55129 -10.26060 -9.63289 -9.32804 -9.18629 -9.06844 -8.51739 -8.37794 -8.27082 -8.10539 -6.09764 -4.19837 0.85957 0.94866 2.79783 3.18416 3.23985 3.24779 3.32511 3.33687 3.84276 3.98146 4.33115 4.37894 4.50608 4.67143 4.74049 4.86121 4.96600 5.05981 5.09345 5.15553 5.18102 5.24100 5.27925 5.44458 5.64032 5.71548 5.75032 5.82851 5.92619 6.02020 6.13324 6.31584 6.34745 6.37891 6.45403 6.54317 6.68117 6.85751 6.94805 7.09926 7.26180 7.37597 7.51177 7.78729 8.27354 8.31492 8.80941 8.86076 9.47545 10.97317 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.002398 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.316367 B =11673.830045 C =12472.984297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.086 3.914 4 C -0.180 4.180 5 C -0.085 4.085 6 C -0.083 4.083 7 C -0.061 4.061 8 C -0.136 4.136 9 C 0.502 3.498 10 O -0.560 6.560 11 N -0.704 5.704 12 C 0.162 3.838 13 C 0.024 3.976 14 C -0.501 4.501 15 H 0.060 0.940 16 C 0.073 3.927 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.211 4.211 23 C -0.143 4.143 24 C -0.112 4.112 25 C 0.071 3.929 26 F -0.134 7.134 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.401 0.599 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.364 -14.804 7.606 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.040 3.960 4 C -0.198 4.198 5 C -0.104 4.104 6 C -0.084 4.084 7 C -0.099 4.099 8 C -0.176 4.176 9 C 0.287 3.713 10 O -0.440 6.440 11 N -0.352 5.352 12 C 0.039 3.961 13 C 0.023 3.977 14 C -0.538 4.538 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.510 5.510 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.248 4.248 23 C -0.181 4.181 24 C -0.131 4.131 25 C 0.051 3.949 26 F -0.112 7.112 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.235 0.765 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.849 -14.582 8.442 23.132 hybrid contribution 0.502 -0.766 -1.083 1.418 sum -15.346 -15.348 7.360 22.918 Atomic orbital electron populations 1.23105 0.77987 1.04209 1.01519 1.86129 1.21672 1.25915 1.88867 1.19000 0.90821 0.85623 1.00522 1.21124 1.00216 0.91442 1.07041 1.20973 0.93998 0.97332 0.98061 1.19761 0.93318 0.95009 1.00284 1.20303 1.01622 0.91782 0.96205 1.21652 1.02103 0.95584 0.98284 1.20517 0.79556 0.86958 0.84222 1.90660 1.55319 1.66531 1.31469 1.46020 1.59352 1.21964 1.07885 1.20992 0.95941 0.81708 0.97425 1.19048 0.94502 0.92688 0.91445 1.20347 0.90769 1.19494 1.23203 0.92202 1.24994 0.98050 0.95127 0.94954 1.69990 1.13425 1.28070 1.39559 0.86625 0.80279 0.81214 0.80102 1.20695 1.21164 1.19755 1.23013 0.92146 1.09749 0.99909 1.22468 0.99250 0.94927 1.01454 1.20999 1.01318 0.89653 1.01086 1.16969 0.85913 0.83003 1.09004 1.91501 1.76419 1.49027 1.94277 0.92385 0.88030 0.92462 0.84532 0.84808 0.89831 0.89822 0.89108 0.88911 0.76476 0.91498 0.94219 0.92851 0.90411 0.91755 0.91834 0.89523 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.21 10.36 -19.58 -0.20 -3.41 16 3 C 0.09 0.92 6.69 -39.18 -0.26 0.66 16 4 C -0.18 -1.53 9.04 -39.45 -0.36 -1.89 16 5 C -0.09 -0.75 9.69 -39.59 -0.38 -1.13 16 6 C -0.08 -0.84 5.13 -104.60 -0.54 -1.38 16 7 C -0.06 -0.69 4.63 -27.88 -0.13 -0.82 16 8 C -0.14 -1.64 5.68 -27.88 -0.16 -1.80 16 9 C 0.50 8.63 7.83 -10.98 -0.09 8.54 16 10 O -0.56 -11.65 15.98 5.55 0.09 -11.56 16 11 N -0.70 -12.99 5.48 -60.29 -0.33 -13.32 16 12 C 0.16 3.59 5.50 -4.04 -0.02 3.57 16 13 C 0.02 0.55 1.47 -155.66 -0.23 0.32 16 14 C -0.50 -12.66 8.59 -34.44 -0.30 -12.96 16 15 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 16 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 17 N -0.87 -24.04 12.65 55.43 0.70 -23.34 16 18 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.21 -4.31 9.96 -26.69 -0.27 -4.58 16 23 C -0.14 -3.24 9.14 -26.70 -0.24 -3.48 16 24 C -0.11 -1.19 9.67 -39.54 -0.38 -1.57 16 25 C 0.07 0.83 7.31 -39.30 -0.29 0.55 16 26 F -0.13 -1.75 17.11 2.25 0.04 -1.71 16 27 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.14 0.80 6.30 -52.49 -0.33 0.47 16 31 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 33 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 6.76 8.33 -40.82 -0.34 6.42 16 37 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 40 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 44 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -30.79 379.55 -8.25 -39.03 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.49 Total: 6.26 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.75 Total: -13.01 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.37 Total: -36.66 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.11 Total: -14.97 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.79 -8.25 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431136593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.878 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds