Wall clock time and date at job start Tue Mar 31 2020 13:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35949 * 117.00042 * 2 1 4 4 C 1.38661 * 120.06626 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97079 * 179.70579 * 4 3 2 6 6 C 1.38267 * 120.09599 * 0.54821 * 5 4 3 7 7 C 1.50701 * 119.93476 * 179.72366 * 6 5 4 8 8 C 1.52997 * 109.47122 * 269.72545 * 7 6 5 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99855 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47299 * 184.79547 * 12 11 9 14 14 C 1.50704 * 115.54588 * 294.81766 * 13 12 11 15 15 H 1.07999 * 119.99785 * 95.20816 * 14 13 12 16 16 C 1.37877 * 119.99726 * 274.92551 * 14 13 12 17 17 N 1.31515 * 120.00084 * 355.41881 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 175.42113 * 16 14 13 19 19 H 1.48504 * 109.47025 * 89.99775 * 18 16 14 20 20 H 1.48493 * 109.47332 * 210.00070 * 18 16 14 21 21 H 1.48499 * 109.47076 * 330.00113 * 18 16 14 22 22 C 1.53001 * 117.49754 * 80.48183 * 13 12 11 23 23 C 1.52994 * 117.50156 * 149.14359 * 13 12 11 24 24 C 1.38254 * 120.12241 * 359.45284 * 6 5 4 25 25 C 1.38335 * 120.03134 * 0.27297 * 24 6 5 26 26 F 1.35103 * 120.04580 * 179.97438 * 25 24 6 27 27 H 1.08997 * 109.47064 * 59.99862 * 1 2 3 28 28 H 1.08999 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46889 * 299.99808 * 1 2 3 30 30 H 1.08001 * 120.01049 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.95263 * 180.29274 * 5 4 3 32 32 H 1.09001 * 109.46448 * 149.72687 * 7 6 5 33 33 H 1.08995 * 109.46980 * 29.73146 * 7 6 5 34 34 H 1.09003 * 109.46827 * 60.00709 * 8 7 6 35 35 H 1.09000 * 109.46857 * 300.00418 * 8 7 6 36 36 H 0.96999 * 119.99492 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47302 * 64.79393 * 12 11 9 38 38 H 1.09005 * 109.46853 * 304.79585 * 12 11 9 39 39 H 0.97004 * 120.00173 * 185.00091 * 17 16 14 40 40 H 1.09003 * 117.49648 * 214.99946 * 22 13 12 41 41 H 1.08991 * 117.50066 * 0.03054 * 22 13 12 42 42 H 1.08996 * 117.49909 * 359.97438 * 23 13 12 43 43 H 1.09006 * 117.50020 * 144.97002 * 23 13 12 44 44 H 1.08006 * 119.98085 * 180.25355 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3025 3.6776 0.0009 7 6 3.9851 5.0212 0.0013 8 6 4.2159 5.4764 -1.4410 9 6 4.8991 6.8197 -1.4405 10 8 5.1738 7.3599 -0.3900 11 7 5.2039 7.4211 -2.6075 12 6 5.8685 8.7266 -2.6071 13 6 5.9913 9.2370 -4.0442 14 6 6.8809 8.4237 -4.9489 15 1 6.4532 7.6629 -5.5850 16 6 8.2400 8.6550 -4.9687 17 7 8.7490 9.6439 -4.2668 18 14 9.3583 7.5638 -5.9923 19 1 9.4925 8.1341 -7.3569 20 1 10.6967 7.4887 -5.3534 21 1 8.7748 6.2012 -6.0805 22 6 4.7578 9.8919 -4.6691 23 6 5.9574 10.7510 -4.2616 24 6 4.0580 2.5198 0.0003 25 6 3.4333 1.2855 -0.0002 26 9 4.1713 0.1539 -0.0012 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2137 2.3200 0.0005 31 1 1.3342 4.5115 0.0119 32 1 4.9431 4.9417 0.5150 33 1 3.3563 5.7480 0.5155 34 1 3.2578 5.5559 -1.9547 35 1 4.8447 4.7495 -1.9552 36 1 4.9838 6.9891 -3.4477 37 1 6.8623 8.6283 -2.1703 38 1 5.2817 9.4328 -2.0196 39 1 9.6938 9.8524 -4.3369 40 1 4.5898 9.7348 -5.7346 41 1 3.8591 9.9597 -4.0562 42 1 5.8473 11.3836 -3.3809 43 1 6.5790 11.1591 -5.0587 44 1 5.1364 2.5790 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431136593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:00 Heat of formation + Delta-G solvation = -102.479138 kcal Electronic energy + Delta-G solvation = -25816.022027 eV Core-core repulsion = 21840.742122 eV Total energy + Delta-G solvation = -3975.279906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83978 -41.11209 -40.57249 -38.86476 -38.38307 -34.88766 -34.44146 -33.93986 -31.72345 -30.58095 -28.58174 -27.89319 -27.07261 -24.91426 -23.76851 -22.92981 -22.14325 -21.33024 -20.81642 -19.28859 -18.38120 -17.99747 -17.92931 -17.42258 -17.14372 -16.72972 -16.52933 -16.38896 -16.04436 -15.79415 -15.56223 -15.29943 -15.14351 -14.63658 -14.49866 -14.25114 -13.82883 -13.65600 -13.48374 -13.29303 -13.03849 -12.92315 -12.86093 -12.81043 -12.39924 -12.35872 -12.10786 -12.00913 -11.86463 -11.85211 -11.39146 -10.94429 -10.84070 -10.42768 -10.01670 -9.93456 -9.78487 -9.11635 -8.08946 -6.23000 0.12508 0.20069 1.42089 1.45593 1.53027 1.81249 2.21236 2.37855 2.43537 2.60938 3.19293 3.21515 3.51338 3.67417 3.77052 3.96854 4.09479 4.22438 4.26180 4.31269 4.37273 4.40722 4.40877 4.53436 4.57300 4.67582 4.73355 4.74794 4.76757 4.88737 4.93149 5.01933 5.08177 5.11381 5.19139 5.24584 5.30475 5.56928 5.58422 5.63832 5.66988 5.74288 5.79674 6.30215 6.37693 6.82159 6.87414 7.45300 7.47464 8.97940 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016669 B = 0.002398 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.316367 B =11673.830045 C =12472.984297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.081 3.919 4 C -0.173 4.173 5 C -0.077 4.077 6 C -0.088 4.088 7 C -0.054 4.054 8 C -0.124 4.124 9 C 0.500 3.500 10 O -0.599 6.599 11 N -0.702 5.702 12 C 0.178 3.822 13 C 0.003 3.997 14 C -0.503 4.503 15 H 0.065 0.935 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.948 3.052 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.262 1.262 22 C -0.175 4.175 23 C -0.157 4.157 24 C -0.116 4.116 25 C 0.038 3.962 26 F -0.150 7.150 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.411 0.589 37 H 0.023 0.977 38 H 0.038 0.962 39 H 0.258 0.742 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.197 -15.945 6.940 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.035 3.965 4 C -0.191 4.191 5 C -0.095 4.095 6 C -0.088 4.088 7 C -0.092 4.092 8 C -0.163 4.163 9 C 0.288 3.712 10 O -0.481 6.481 11 N -0.351 5.351 12 C 0.054 3.946 13 C 0.002 3.998 14 C -0.541 4.541 15 H 0.083 0.917 16 C -0.178 4.178 17 N -0.546 5.546 18 Si 0.774 3.226 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.187 1.187 22 C -0.212 4.212 23 C -0.195 4.195 24 C -0.135 4.135 25 C 0.019 3.981 26 F -0.129 7.129 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.090 0.910 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.247 0.753 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.714 -15.755 7.753 25.662 hybrid contribution 1.295 -0.422 -0.840 1.600 sum -17.418 -16.176 6.913 24.756 Atomic orbital electron populations 1.23434 0.75657 1.05825 1.02848 1.86104 1.24177 1.26100 1.88766 1.19207 0.90594 0.86602 1.00116 1.21437 1.01617 0.90396 1.05653 1.21278 0.93452 0.98459 0.96300 1.19629 0.93976 0.93824 1.01392 1.20185 1.01071 0.92475 0.95474 1.21662 1.03099 0.92132 0.99431 1.21424 0.78593 0.88204 0.82956 1.90645 1.56779 1.67916 1.32778 1.45934 1.59241 1.20933 1.09032 1.20529 0.94014 0.83610 0.96476 1.19083 0.96353 0.92588 0.91779 1.20686 0.91126 1.19349 1.22901 0.91679 1.25710 0.99620 0.96207 0.96240 1.70116 1.13371 1.29821 1.41324 0.85706 0.78162 0.80077 0.78629 1.20323 1.21981 1.18661 1.22995 0.91713 1.06034 1.00488 1.22391 1.00901 0.95024 1.01226 1.21055 1.01588 0.89721 1.01117 1.17294 0.86798 0.82849 1.11179 1.91447 1.76930 1.49869 1.94650 0.91008 0.86511 0.91018 0.81487 0.82291 0.91431 0.89748 0.85983 0.87626 0.75308 0.95846 0.94386 0.93279 0.89699 0.89222 0.91351 0.91857 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.46 10.36 -92.97 -0.96 -7.42 16 3 C 0.08 1.60 6.69 22.53 0.15 1.75 16 4 C -0.17 -2.38 9.04 22.36 0.20 -2.18 16 5 C -0.08 -1.09 9.69 22.26 0.22 -0.87 16 6 C -0.09 -1.59 5.13 -19.85 -0.10 -1.69 16 7 C -0.05 -1.13 4.63 29.85 0.14 -0.99 16 8 C -0.12 -2.67 5.68 29.85 0.17 -2.50 16 9 C 0.50 16.62 7.83 87.66 0.69 17.30 16 10 O -0.60 -24.90 15.98 -3.04 -0.05 -24.95 16 11 N -0.70 -25.13 5.48 -463.05 -2.54 -27.67 16 12 C 0.18 7.93 5.50 86.38 0.48 8.40 16 13 C 0.00 0.12 1.47 -52.93 -0.08 0.04 16 14 C -0.50 -25.18 8.59 25.60 0.22 -24.96 16 15 H 0.07 3.12 7.82 -2.91 -0.02 3.10 16 16 C 0.02 1.20 5.43 84.65 0.46 1.66 16 17 N -0.91 -51.15 12.65 21.45 0.27 -50.87 16 18 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 22 C -0.18 -6.79 9.96 30.62 0.30 -6.48 16 23 C -0.16 -7.12 9.14 30.62 0.28 -6.84 16 24 C -0.12 -2.40 9.67 22.30 0.22 -2.18 16 25 C 0.04 0.89 7.31 22.45 0.16 1.06 16 26 F -0.15 -4.04 17.11 44.97 0.77 -3.27 16 27 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 28 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 30 H 0.17 1.21 6.30 -2.91 -0.02 1.20 16 31 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 33 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 34 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.41 13.01 8.33 -92.71 -0.77 12.24 16 37 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.04 1.68 8.09 -2.38 -0.02 1.66 16 39 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 40 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 44 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -68.24 379.55 4.37 -63.87 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.24 Total: 23.66 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.61 Total: -17.25 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -2.27 Total: -78.54 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.01 Total: -32.37 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -68.24 4.37 -63.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431136593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.608 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds