Wall clock time and date at job start Tue Mar 31 2020 12:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.46504 * 119.99779 * 264.92584 * 3 2 1 5 5 C 1.50700 * 109.46879 * 268.08845 * 4 3 2 6 6 H 1.08002 * 120.00194 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00005 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00206 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47154 * 89.99807 * 9 7 5 11 11 H 1.48495 * 109.47549 * 210.00115 * 9 7 5 12 12 H 1.48505 * 109.47116 * 330.00350 * 9 7 5 13 13 C 1.34775 * 120.00305 * 84.92670 * 3 2 1 14 14 O 1.21282 * 119.99723 * 4.78002 * 13 3 2 15 15 C 1.50695 * 120.00034 * 184.78750 * 13 3 2 16 16 H 1.08996 * 109.47231 * 28.22654 * 15 13 3 17 17 C 1.53000 * 109.46807 * 268.22405 * 15 13 3 18 18 C 1.53003 * 109.47283 * 148.23031 * 15 13 3 19 19 C 1.50702 * 109.47344 * 184.99922 * 18 15 13 20 20 O 1.21276 * 119.99864 * 359.97438 * 19 18 15 21 21 C 1.46979 * 119.99918 * 180.27150 * 19 18 15 22 22 C 1.39954 * 120.19457 * 359.72149 * 21 19 18 23 23 C 1.37767 * 119.84472 * 179.97438 * 22 21 19 24 24 C 1.38520 * 120.25507 * 0.02562 * 23 22 21 25 25 C 1.38227 * 120.39822 * 359.97438 * 24 23 22 26 26 C 1.38276 * 120.14326 * 359.73643 * 25 24 23 27 27 F 1.35102 * 120.12849 * 180.25578 * 26 25 24 28 28 H 1.08997 * 109.47127 * 301.81879 * 1 2 3 29 29 H 1.09002 * 109.46760 * 61.81812 * 1 2 3 30 30 H 1.08998 * 109.47119 * 181.81536 * 1 2 3 31 31 H 1.09000 * 109.47334 * 239.99836 * 2 1 3 32 32 H 1.09001 * 109.46656 * 120.00066 * 2 1 3 33 33 H 1.08993 * 109.47316 * 28.08647 * 4 3 2 34 34 H 1.09000 * 109.47265 * 148.09404 * 4 3 2 35 35 H 0.96999 * 120.00707 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47196 * 177.83297 * 17 15 13 37 37 H 1.08999 * 109.47365 * 297.83279 * 17 15 13 38 38 H 1.08994 * 109.47328 * 57.83205 * 17 15 13 39 39 H 1.08991 * 109.47332 * 64.99098 * 18 15 13 40 40 H 1.09008 * 109.46794 * 304.99700 * 18 15 13 41 41 H 1.07995 * 120.07354 * 0.02562 * 22 21 19 42 42 H 1.08002 * 119.86819 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.80443 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.92590 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3683 2.0344 -1.2638 5 6 3.8336 1.8262 -1.5479 6 1 4.4433 1.2641 -0.8561 7 6 4.3961 2.3544 -2.6905 8 7 3.6538 3.0394 -3.5328 9 14 6.2125 2.0971 -3.0424 10 1 6.3926 0.8502 -3.8287 11 1 6.7350 3.2509 -3.8175 12 1 6.9540 1.9853 -1.7606 13 6 2.1457 2.0510 1.1626 14 8 1.9394 1.4841 2.2147 15 6 2.5442 3.5043 1.1551 16 1 2.2115 3.9675 0.2263 17 6 4.0662 3.6163 1.2644 18 6 1.8939 4.2175 2.3423 19 6 2.1915 5.6929 2.2664 20 8 2.8585 6.1308 1.3530 21 6 1.6789 6.6003 3.3028 22 6 0.9092 6.0994 4.3589 23 6 0.4329 6.9563 5.3268 24 6 0.7124 8.3112 5.2582 25 6 1.4717 8.8171 4.2197 26 6 1.9631 7.9710 3.2426 27 9 2.7094 8.4650 2.2306 28 1 -0.3633 0.5418 0.8732 29 1 -0.3633 0.4854 -0.9059 30 1 -0.3633 -1.0271 0.0326 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7769 1.6034 -2.0715 34 1 2.1605 3.1019 -1.1909 35 1 4.0496 3.4114 -4.3365 36 1 4.3574 4.6657 1.2203 37 1 4.3950 3.1874 2.2110 38 1 4.5304 3.0754 0.4398 39 1 2.2937 3.8136 3.2723 40 1 0.8153 4.0625 2.3129 41 1 0.6899 5.0434 4.4153 42 1 -0.1615 6.5702 6.1417 43 1 0.3350 8.9765 6.0207 44 1 1.6854 9.8747 4.1740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439139732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:42 Heat of formation + Delta-G solvation = -100.607549 kcal Electronic energy + Delta-G solvation = -27332.677976 eV Core-core repulsion = 23357.479228 eV Total energy + Delta-G solvation = -3975.198747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.97469 -40.14905 -39.16231 -38.21907 -35.21166 -33.84272 -32.66389 -31.96883 -30.74173 -30.30340 -27.68937 -26.98677 -24.49501 -23.82174 -22.98085 -22.77212 -21.44439 -19.67324 -18.14082 -17.71797 -16.96578 -16.53303 -16.37460 -16.13394 -15.83196 -15.47202 -14.96760 -14.82181 -14.59937 -14.35999 -14.12072 -14.01134 -13.33592 -13.18145 -12.98227 -12.95105 -12.48997 -12.44426 -12.24185 -11.97843 -11.82999 -11.63914 -11.59863 -11.41757 -11.29346 -10.92888 -10.84204 -10.61643 -10.50408 -10.25863 -10.00862 -9.67820 -9.53684 -9.40793 -9.01513 -8.85890 -8.47932 -7.69013 -6.13621 -4.19854 0.37208 0.89372 2.34984 3.26591 3.34068 3.36052 3.40419 3.43644 3.71589 3.97447 4.17155 4.37916 4.39524 4.58645 4.81627 4.95010 5.03676 5.19488 5.28152 5.36366 5.44933 5.53804 5.67758 5.70643 5.81257 5.84395 5.87165 5.88394 5.93725 6.03901 6.09113 6.15656 6.26436 6.41988 6.51058 6.60258 6.63359 6.65266 6.85172 7.09202 7.25738 7.57671 7.64512 7.81009 8.10318 8.37115 8.83348 9.04788 9.46804 10.93309 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.003794 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.495782 B = 7377.978430 C = 8918.565815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.594 5.594 4 C 0.235 3.765 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.523 3.477 14 O -0.580 6.580 15 C -0.094 4.094 16 H 0.104 0.896 17 C -0.148 4.148 18 C -0.144 4.144 19 C 0.387 3.613 20 O -0.423 6.423 21 C -0.199 4.199 22 C -0.045 4.045 23 C -0.146 4.146 24 C -0.065 4.065 25 C -0.172 4.172 26 C 0.154 3.846 27 F -0.116 7.116 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 7.571 15.795 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.323 5.323 4 C 0.115 3.885 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.312 3.688 14 O -0.462 6.462 15 C -0.115 4.115 16 H 0.122 0.878 17 C -0.206 4.206 18 C -0.182 4.182 19 C 0.263 3.737 20 O -0.296 6.296 21 C -0.201 4.201 22 C -0.063 4.063 23 C -0.164 4.164 24 C -0.083 4.083 25 C -0.191 4.191 26 C 0.134 3.866 27 F -0.094 7.094 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.679 7.619 15.569 18.958 hybrid contribution 1.054 0.051 -0.555 1.193 sum -6.625 7.671 15.014 18.115 Atomic orbital electron populations 1.22112 0.96957 1.01193 1.01838 1.21225 0.93249 0.84024 1.02388 1.48270 1.62416 1.13144 1.08513 1.19505 0.96016 0.93606 0.79356 1.21428 0.94214 1.34947 1.06722 0.92038 1.24916 0.98205 0.94712 0.95813 1.69909 1.35979 1.34834 1.11972 0.86557 0.85001 0.77758 0.78560 1.20610 1.21031 1.19682 1.20377 0.76280 0.88800 0.83353 1.90554 1.53767 1.70478 1.31403 1.21006 0.98640 0.92577 0.99295 0.87782 1.21886 0.92610 1.03379 1.02686 1.21863 1.02855 0.91864 1.01572 1.22381 0.77488 0.90870 0.82954 1.90616 1.28660 1.79054 1.31246 1.20844 1.05445 0.93168 1.00604 1.21485 0.92653 1.00945 0.91211 1.21209 1.01847 0.93421 0.99944 1.21241 0.94868 0.95689 0.96482 1.21173 1.01869 1.00544 0.95496 1.18016 0.91387 0.91254 0.85956 1.91607 1.72955 1.87591 1.57267 0.92855 0.92674 0.92464 0.90449 0.91353 0.94724 0.94092 0.92523 0.91251 0.93815 0.89173 0.87560 0.88538 0.83736 0.84691 0.84684 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.20 37.16 0.38 -2.17 16 2 C 0.11 2.12 6.11 -4.04 -0.02 2.10 16 3 N -0.59 -12.60 2.47 -175.06 -0.43 -13.03 16 4 C 0.23 5.63 4.99 -5.19 -0.03 5.60 16 5 C -0.53 -13.94 7.55 -34.44 -0.26 -14.20 16 6 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.52 10.87 6.66 -10.99 -0.07 10.80 16 14 O -0.58 -12.61 15.94 5.56 0.09 -12.52 16 15 C -0.09 -1.80 1.78 -91.77 -0.16 -1.97 16 16 H 0.10 2.18 5.69 -51.93 -0.30 1.89 16 17 C -0.15 -2.93 8.89 37.16 0.33 -2.60 16 18 C -0.14 -2.18 3.32 -27.88 -0.09 -2.27 16 19 C 0.39 6.02 6.84 -30.77 -0.21 5.81 16 20 O -0.42 -8.11 12.95 5.56 0.07 -8.04 16 21 C -0.20 -2.53 5.87 -105.01 -0.62 -3.14 16 22 C -0.04 -0.42 9.47 -39.11 -0.37 -0.79 16 23 C -0.15 -1.07 10.02 -39.65 -0.40 -1.47 16 24 C -0.06 -0.46 10.03 -39.48 -0.40 -0.86 16 25 C -0.17 -1.59 10.01 -39.57 -0.40 -1.98 16 26 C 0.15 1.97 7.29 -38.86 -0.28 1.68 16 27 F -0.12 -1.80 15.55 2.25 0.04 -1.77 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 32 H 0.07 1.27 7.52 -51.93 -0.39 0.88 16 33 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.04 1.03 5.77 -51.93 -0.30 0.73 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.07 1.36 6.00 -51.93 -0.31 1.05 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 2.02 5.98 -51.93 -0.31 1.71 16 39 H 0.11 1.49 7.96 -51.93 -0.41 1.08 16 40 H 0.10 1.29 8.09 -51.92 -0.42 0.87 16 41 H 0.14 1.13 7.05 -52.49 -0.37 0.76 16 42 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -31.41 368.42 -7.81 -39.22 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.14 Total: 2.59 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.70 Total: -3.78 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.30 Total: -37.22 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.16 Total: -20.56 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.41 -7.81 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439139732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.390 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds