Wall clock time and date at job start Tue Mar 31 2020 12:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47005 * 2 1 4 4 C 1.46504 * 119.99779 * 264.92584 * 3 2 1 5 5 C 1.50700 * 109.46879 * 268.08845 * 4 3 2 6 6 H 1.08002 * 120.00194 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00005 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00206 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47154 * 89.99807 * 9 7 5 11 11 H 1.48495 * 109.47549 * 210.00115 * 9 7 5 12 12 H 1.48505 * 109.47116 * 330.00350 * 9 7 5 13 13 C 1.34775 * 120.00305 * 84.92670 * 3 2 1 14 14 O 1.21282 * 119.99723 * 4.78002 * 13 3 2 15 15 C 1.50695 * 120.00034 * 184.78750 * 13 3 2 16 16 H 1.08996 * 109.47231 * 28.22654 * 15 13 3 17 17 C 1.53000 * 109.46807 * 268.22405 * 15 13 3 18 18 C 1.53003 * 109.47283 * 148.23031 * 15 13 3 19 19 C 1.50702 * 109.47344 * 184.99922 * 18 15 13 20 20 O 1.21276 * 119.99864 * 359.97438 * 19 18 15 21 21 C 1.46979 * 119.99918 * 180.27150 * 19 18 15 22 22 C 1.39954 * 120.19457 * 359.72149 * 21 19 18 23 23 C 1.37767 * 119.84472 * 179.97438 * 22 21 19 24 24 C 1.38520 * 120.25507 * 0.02562 * 23 22 21 25 25 C 1.38227 * 120.39822 * 359.97438 * 24 23 22 26 26 C 1.38276 * 120.14326 * 359.73643 * 25 24 23 27 27 F 1.35102 * 120.12849 * 180.25578 * 26 25 24 28 28 H 1.08997 * 109.47127 * 301.81879 * 1 2 3 29 29 H 1.09002 * 109.46760 * 61.81812 * 1 2 3 30 30 H 1.08998 * 109.47119 * 181.81536 * 1 2 3 31 31 H 1.09000 * 109.47334 * 239.99836 * 2 1 3 32 32 H 1.09001 * 109.46656 * 120.00066 * 2 1 3 33 33 H 1.08993 * 109.47316 * 28.08647 * 4 3 2 34 34 H 1.09000 * 109.47265 * 148.09404 * 4 3 2 35 35 H 0.96999 * 120.00707 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47196 * 177.83297 * 17 15 13 37 37 H 1.08999 * 109.47365 * 297.83279 * 17 15 13 38 38 H 1.08994 * 109.47328 * 57.83205 * 17 15 13 39 39 H 1.08991 * 109.47332 * 64.99098 * 18 15 13 40 40 H 1.09008 * 109.46794 * 304.99700 * 18 15 13 41 41 H 1.07995 * 120.07354 * 0.02562 * 22 21 19 42 42 H 1.08002 * 119.86819 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.80443 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.92590 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3683 2.0344 -1.2638 5 6 3.8336 1.8262 -1.5479 6 1 4.4433 1.2641 -0.8561 7 6 4.3961 2.3544 -2.6905 8 7 3.6538 3.0394 -3.5328 9 14 6.2125 2.0971 -3.0424 10 1 6.3926 0.8502 -3.8287 11 1 6.7350 3.2509 -3.8175 12 1 6.9540 1.9853 -1.7606 13 6 2.1457 2.0510 1.1626 14 8 1.9394 1.4841 2.2147 15 6 2.5442 3.5043 1.1551 16 1 2.2115 3.9675 0.2263 17 6 4.0662 3.6163 1.2644 18 6 1.8939 4.2175 2.3423 19 6 2.1915 5.6929 2.2664 20 8 2.8585 6.1308 1.3530 21 6 1.6789 6.6003 3.3028 22 6 0.9092 6.0994 4.3589 23 6 0.4329 6.9563 5.3268 24 6 0.7124 8.3112 5.2582 25 6 1.4717 8.8171 4.2197 26 6 1.9631 7.9710 3.2426 27 9 2.7094 8.4650 2.2306 28 1 -0.3633 0.5418 0.8732 29 1 -0.3633 0.4854 -0.9059 30 1 -0.3633 -1.0271 0.0326 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7769 1.6034 -2.0715 34 1 2.1605 3.1019 -1.1909 35 1 4.0496 3.4114 -4.3365 36 1 4.3574 4.6657 1.2203 37 1 4.3950 3.1874 2.2110 38 1 4.5304 3.0754 0.4398 39 1 2.2937 3.8136 3.2723 40 1 0.8153 4.0625 2.3129 41 1 0.6899 5.0434 4.4153 42 1 -0.1615 6.5702 6.1417 43 1 0.3350 8.9765 6.0207 44 1 1.6854 9.8747 4.1740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439139732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:40 Heat of formation + Delta-G solvation = -117.297007 kcal Electronic energy + Delta-G solvation = -27333.401685 eV Core-core repulsion = 23357.479228 eV Total energy + Delta-G solvation = -3975.922457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -49.97867 -41.46225 -40.52297 -39.20877 -36.94244 -35.38814 -34.60782 -32.88282 -31.81366 -31.46560 -29.00098 -28.93638 -25.85161 -24.97784 -24.86570 -23.65733 -22.72354 -20.80509 -19.69189 -18.83089 -18.44736 -18.27126 -17.50590 -17.31427 -17.00084 -16.88765 -16.45256 -16.16890 -15.84829 -15.61000 -15.52774 -15.03976 -14.69170 -14.50972 -14.42251 -14.24462 -14.11972 -13.67957 -13.35047 -13.30405 -13.22233 -13.14098 -12.95422 -12.86221 -12.72854 -12.64180 -12.29612 -12.23194 -12.01633 -11.94786 -11.75548 -11.61850 -10.85228 -10.61868 -10.40384 -10.14593 -9.78792 -9.46419 -8.21140 -6.33678 -0.48104 0.18653 1.34269 1.37831 1.40471 1.49300 1.73962 2.24571 2.41584 2.64419 2.89733 3.09622 3.19065 3.59088 3.74402 3.82046 3.99595 4.01957 4.16058 4.23475 4.29507 4.36197 4.41747 4.47308 4.55751 4.67217 4.70524 4.81218 4.82295 4.96764 4.97791 5.01363 5.04392 5.08265 5.08854 5.24240 5.25737 5.32735 5.37109 5.40242 5.64856 5.83592 5.86304 6.05541 6.47505 6.55770 6.80953 7.29176 7.40310 8.84758 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.003794 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.495782 B = 7377.978430 C = 8918.565815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.252 3.748 5 C -0.536 4.536 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.523 3.477 14 O -0.585 6.585 15 C -0.093 4.093 16 H 0.078 0.922 17 C -0.139 4.139 18 C -0.135 4.135 19 C 0.391 3.609 20 O -0.476 6.476 21 C -0.225 4.225 22 C -0.044 4.044 23 C -0.135 4.135 24 C -0.048 4.048 25 C -0.172 4.172 26 C 0.116 3.884 27 F -0.145 7.145 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.025 0.975 35 H 0.266 0.734 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.161 0.839 42 H 0.174 0.826 43 H 0.177 0.823 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 7.456 18.818 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.329 5.329 4 C 0.131 3.869 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.312 3.688 14 O -0.468 6.468 15 C -0.114 4.114 16 H 0.096 0.904 17 C -0.197 4.197 18 C -0.173 4.173 19 C 0.270 3.730 20 O -0.353 6.353 21 C -0.227 4.227 22 C -0.062 4.062 23 C -0.152 4.152 24 C -0.065 4.065 25 C -0.191 4.191 26 C 0.097 3.903 27 F -0.123 7.123 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.179 0.821 42 H 0.191 0.809 43 H 0.194 0.806 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.051 7.477 18.620 22.013 hybrid contribution 1.388 0.094 -1.360 1.946 sum -7.663 7.571 17.260 20.346 Atomic orbital electron populations 1.22013 0.94489 1.03107 1.01352 1.21437 0.95296 0.82437 1.02331 1.48289 1.62681 1.14250 1.07693 1.19103 0.94836 0.92768 0.80218 1.21587 0.95134 1.34348 1.06403 0.92798 1.25620 1.01947 0.94547 0.95776 1.70004 1.37580 1.35872 1.12478 0.85659 0.80479 0.77883 0.78364 1.19580 1.20942 1.19499 1.20561 0.75912 0.89229 0.83049 1.90538 1.54175 1.70792 1.31296 1.20943 0.98345 0.91945 1.00160 0.90351 1.21752 0.93114 1.02705 1.02086 1.21847 1.03755 0.91482 1.00190 1.22714 0.76142 0.91342 0.82794 1.90599 1.31403 1.79770 1.33492 1.20700 1.07831 0.92776 1.01371 1.21755 0.91666 1.02254 0.90477 1.21697 1.00623 0.93211 0.99719 1.21782 0.92543 0.96361 0.95853 1.21479 1.01540 1.01076 0.94965 1.18533 0.92862 0.92143 0.86786 1.91528 1.74049 1.87926 1.58813 0.93345 0.93065 0.89343 0.90569 0.91292 0.95976 0.95756 0.92457 0.91650 0.92312 0.92167 0.85844 0.86474 0.82129 0.80894 0.80560 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 10.20 71.98 0.73 -3.80 16 2 C 0.11 3.93 6.11 86.38 0.53 4.45 16 3 N -0.60 -25.80 2.47 -826.16 -2.04 -27.84 16 4 C 0.25 12.50 4.99 85.63 0.43 12.93 16 5 C -0.54 -28.74 7.55 25.60 0.19 -28.55 16 6 H 0.05 2.93 7.64 -2.91 -0.02 2.91 16 7 C 0.02 1.17 5.46 84.66 0.46 1.63 16 8 N -0.92 -53.00 13.29 21.45 0.28 -52.71 16 9 Si 0.95 43.75 29.54 68.60 2.03 45.78 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.52 21.84 6.66 87.66 0.58 22.43 16 14 O -0.59 -24.83 15.94 -3.04 -0.05 -24.88 16 15 C -0.09 -3.66 1.78 -11.54 -0.02 -3.68 16 16 H 0.08 3.50 5.69 -2.39 -0.01 3.49 16 17 C -0.14 -5.71 8.89 71.98 0.64 -5.07 16 18 C -0.14 -4.07 3.32 29.85 0.10 -3.97 16 19 C 0.39 12.55 6.84 27.98 0.19 12.74 16 20 O -0.48 -19.60 12.95 -3.02 -0.04 -19.63 16 21 C -0.22 -5.66 5.87 -20.12 -0.12 -5.78 16 22 C -0.04 -0.70 9.47 22.57 0.21 -0.49 16 23 C -0.13 -1.36 10.02 22.23 0.22 -1.14 16 24 C -0.05 -0.47 10.03 22.33 0.22 -0.24 16 25 C -0.17 -2.83 10.01 22.28 0.22 -2.61 16 26 C 0.12 3.01 7.29 22.73 0.17 3.17 16 27 F -0.14 -4.81 15.55 44.97 0.70 -4.11 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.08 2.77 8.03 -2.39 -0.02 2.75 16 32 H 0.07 2.51 7.52 -2.39 -0.02 2.49 16 33 H 0.02 1.15 8.06 -2.39 -0.02 1.13 16 34 H 0.02 1.30 5.77 -2.39 -0.01 1.29 16 35 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.06 2.73 6.00 -2.39 -0.01 2.71 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 2.81 5.98 -2.39 -0.01 2.79 16 39 H 0.12 3.29 7.96 -2.39 -0.02 3.27 16 40 H 0.12 3.01 8.09 -2.38 -0.02 3.00 16 41 H 0.16 1.99 7.05 -2.91 -0.02 1.97 16 42 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 43 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -71.54 368.42 6.66 -64.88 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.01 Total: 16.52 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.77 Total: 2.01 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -1.75 Total: -80.56 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.09 Total: -44.52 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.70 Total: -4.11 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.54 6.66 -64.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439139732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.418 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds