Wall clock time and date at job start Tue Mar 31 2020 12:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47279 * 2 1 4 4 C 1.46497 * 119.99904 * 264.85286 * 3 2 1 5 5 C 1.50700 * 109.47082 * 268.05137 * 4 3 2 6 6 H 1.08000 * 119.99917 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00462 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00551 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46850 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47174 * 119.99556 * 9 7 5 12 12 H 1.48492 * 109.47546 * 240.00010 * 9 7 5 13 13 C 1.34777 * 119.99810 * 84.84786 * 3 2 1 14 14 O 1.21282 * 120.00029 * 3.95697 * 13 3 2 15 15 C 1.50701 * 119.99773 * 183.95111 * 13 3 2 16 16 H 1.08992 * 109.47041 * 314.32101 * 15 13 3 17 17 C 1.53000 * 109.46768 * 74.32457 * 15 13 3 18 18 C 1.52999 * 109.46816 * 194.31992 * 15 13 3 19 19 C 1.50698 * 109.46944 * 175.00228 * 18 15 13 20 20 O 1.21273 * 120.00271 * 359.97438 * 19 18 15 21 21 C 1.46982 * 120.00067 * 180.02562 * 19 18 15 22 22 C 1.39948 * 120.19495 * 359.97438 * 21 19 18 23 23 C 1.37770 * 119.85315 * 180.30398 * 22 21 19 24 24 C 1.38528 * 120.24571 * 359.42038 * 23 22 21 25 25 C 1.38227 * 120.40157 * 0.60420 * 24 23 22 26 26 C 1.38277 * 120.14253 * 359.68031 * 25 24 23 27 27 F 1.35098 * 120.12800 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47403 * 59.99923 * 1 2 3 29 29 H 1.09003 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47469 * 299.99667 * 1 2 3 31 31 H 1.09006 * 109.46940 * 240.00056 * 2 1 3 32 32 H 1.08996 * 109.47390 * 120.00387 * 2 1 3 33 33 H 1.09002 * 109.47498 * 28.04851 * 4 3 2 34 34 H 1.08998 * 109.46946 * 148.05352 * 4 3 2 35 35 H 0.96996 * 120.00050 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47311 * 65.06770 * 17 15 13 37 37 H 1.09007 * 109.46911 * 185.06655 * 17 15 13 38 38 H 1.08994 * 109.47398 * 305.06444 * 17 15 13 39 39 H 1.09000 * 109.47107 * 55.00571 * 18 15 13 40 40 H 1.08996 * 109.47551 * 295.00298 * 18 15 13 41 41 H 1.07998 * 120.07766 * 0.02686 * 22 21 19 42 42 H 1.07999 * 119.87900 * 179.72030 * 23 22 21 43 43 H 1.08000 * 119.80085 * 180.30200 * 24 23 22 44 44 H 1.08000 * 119.93132 * 179.69512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3698 2.0338 -1.2636 5 6 3.8356 1.8263 -1.5454 6 1 4.4444 1.2641 -0.8528 7 6 4.3996 2.3541 -2.6875 8 7 3.6582 3.0383 -3.5312 9 14 6.2166 2.0975 -3.0365 10 1 6.8233 1.3001 -1.9404 11 1 6.3761 1.3733 -4.3231 12 1 6.8951 3.4156 -3.1230 13 6 2.1441 2.0515 1.1625 14 8 1.9219 1.4891 2.2138 15 6 2.5610 3.4996 1.1560 16 1 3.4043 3.6319 0.4782 17 6 1.3896 4.3654 0.6878 18 6 2.9719 3.9184 2.5690 19 6 3.5044 5.3278 2.5404 20 8 3.5512 5.9372 1.4929 21 6 3.9682 5.9636 3.7818 22 6 3.9165 5.2640 4.9927 23 6 4.3472 5.8690 6.1531 24 6 4.8421 7.1625 6.1235 25 6 4.8974 7.8633 4.9333 26 6 4.4640 7.2740 3.7598 27 9 4.5186 7.9590 2.5967 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7798 1.6021 -2.0720 34 1 2.1613 3.1012 -1.1915 35 1 4.0548 3.4093 -4.3349 36 1 0.5789 4.3031 1.4137 37 1 1.7170 5.4011 0.5968 38 1 1.0385 4.0089 -0.2805 39 1 3.7460 3.2450 2.9369 40 1 2.1054 3.8707 3.2286 41 1 3.5358 4.2537 5.0183 42 1 4.3034 5.3311 7.0886 43 1 5.1824 7.6281 7.0367 44 1 5.2801 8.8731 4.9198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439139745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:49 Heat of formation + Delta-G solvation = -101.428206 kcal Electronic energy + Delta-G solvation = -27349.483580 eV Core-core repulsion = 23374.249247 eV Total energy + Delta-G solvation = -3975.234334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -48.95713 -40.14008 -39.16682 -38.19898 -35.20922 -33.89186 -32.66982 -31.97506 -30.71905 -30.28673 -27.77434 -26.95971 -24.50008 -23.79040 -22.98655 -22.75162 -21.46316 -19.63621 -18.13270 -17.70743 -16.98596 -16.54095 -16.40941 -16.04131 -15.80532 -15.43445 -14.92019 -14.85468 -14.59571 -14.35954 -14.14437 -14.07451 -13.37375 -13.28098 -13.08975 -12.66924 -12.49303 -12.40972 -12.21133 -12.17021 -11.88142 -11.63395 -11.56947 -11.41869 -11.26453 -10.93330 -10.84263 -10.62068 -10.51536 -10.42017 -10.02296 -9.67630 -9.50354 -9.38685 -8.99458 -8.88218 -8.49459 -7.67908 -6.13958 -4.21061 0.39445 0.91620 2.37335 3.25414 3.33665 3.36302 3.42769 3.44816 3.73154 3.99338 4.18380 4.38564 4.41274 4.60913 4.83829 4.96700 5.02916 5.19118 5.28231 5.40171 5.43962 5.54783 5.67552 5.72834 5.81684 5.86558 5.89061 5.89765 5.94059 6.00768 6.04759 6.10051 6.27142 6.38890 6.43115 6.53851 6.62776 6.69168 6.70336 6.85593 7.28125 7.59102 7.66070 7.80886 8.10744 8.37946 8.83297 9.04867 9.46781 10.92866 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.004009 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.285522 B = 6982.171331 C = 8452.240584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.593 5.593 4 C 0.229 3.771 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.524 3.476 14 O -0.581 6.581 15 C -0.100 4.100 16 H 0.118 0.882 17 C -0.145 4.145 18 C -0.139 4.139 19 C 0.387 3.613 20 O -0.425 6.425 21 C -0.199 4.199 22 C -0.044 4.044 23 C -0.146 4.146 24 C -0.065 4.065 25 C -0.172 4.172 26 C 0.154 3.846 27 F -0.116 7.116 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.046 0.954 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.146 0.854 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 5.769 17.351 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.322 5.322 4 C 0.109 3.891 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.312 3.688 14 O -0.463 6.463 15 C -0.121 4.121 16 H 0.136 0.864 17 C -0.203 4.203 18 C -0.177 4.177 19 C 0.263 3.737 20 O -0.298 6.298 21 C -0.201 4.201 22 C -0.062 4.062 23 C -0.164 4.164 24 C -0.083 4.083 25 C -0.191 4.191 26 C 0.134 3.866 27 F -0.094 7.094 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.203 5.918 17.043 18.081 hybrid contribution 1.139 0.011 -0.567 1.272 sum -0.064 5.929 16.476 17.510 Atomic orbital electron populations 1.22111 0.96956 1.01167 1.01895 1.21224 0.93281 0.84022 1.02329 1.48229 1.62432 1.13057 1.08520 1.19627 0.95856 0.94188 0.79389 1.21522 0.94332 1.35030 1.06903 0.92155 1.24925 0.98259 0.94706 0.95786 1.69924 1.35858 1.34962 1.11929 0.86493 0.84981 0.78103 0.78244 1.19702 1.20851 1.20751 1.20352 0.76580 0.88487 0.83337 1.90553 1.53784 1.70529 1.31465 1.21039 1.01966 0.92294 0.96849 0.86443 1.21889 0.96099 1.00693 1.01592 1.21792 1.03082 0.93659 0.99159 1.22413 0.75136 0.89501 0.86631 1.90604 1.42249 1.64580 1.32338 1.20844 1.07325 0.94538 0.97345 1.21498 0.94383 0.99879 0.90490 1.21213 1.00887 0.95580 0.98755 1.21240 0.95540 0.94176 0.97336 1.21168 1.04528 1.01889 0.91534 1.18018 0.96869 0.89628 0.82109 1.91604 1.93199 1.78517 1.46121 0.92672 0.92493 0.92804 0.90478 0.91389 0.94779 0.93289 0.92575 0.93482 0.90640 0.91124 0.88023 0.87902 0.83670 0.84692 0.84702 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.20 37.15 0.38 -2.22 16 2 C 0.11 2.14 6.10 -4.04 -0.02 2.12 16 3 N -0.59 -12.63 2.47 -175.06 -0.43 -13.06 16 4 C 0.23 5.52 4.64 -5.20 -0.02 5.49 16 5 C -0.54 -14.33 8.93 -34.44 -0.31 -14.64 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.52 10.88 6.84 -10.98 -0.08 10.80 16 14 O -0.58 -12.53 15.72 5.56 0.09 -12.45 16 15 C -0.10 -1.91 1.53 -91.77 -0.14 -2.05 16 16 H 0.12 2.59 6.83 -51.93 -0.35 2.23 16 17 C -0.15 -2.60 8.50 37.16 0.32 -2.29 16 18 C -0.14 -2.15 3.10 -27.88 -0.09 -2.24 16 19 C 0.39 6.11 6.85 -30.77 -0.21 5.90 16 20 O -0.42 -8.18 12.96 5.56 0.07 -8.11 16 21 C -0.20 -2.59 5.87 -105.01 -0.62 -3.20 16 22 C -0.04 -0.43 9.47 -39.11 -0.37 -0.80 16 23 C -0.15 -1.12 10.03 -39.65 -0.40 -1.52 16 24 C -0.06 -0.48 10.04 -39.48 -0.40 -0.88 16 25 C -0.17 -1.64 10.01 -39.57 -0.40 -2.03 16 26 C 0.15 2.00 7.29 -38.86 -0.28 1.72 16 27 F -0.12 -1.83 15.55 2.25 0.04 -1.79 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 32 H 0.07 1.27 7.53 -51.93 -0.39 0.88 16 33 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 34 H 0.05 1.22 4.63 -51.93 -0.24 0.98 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.37 6.06 -51.93 -0.31 1.06 16 38 H 0.07 1.34 6.07 -51.93 -0.32 1.03 16 39 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 40 H 0.10 1.42 8.04 -51.93 -0.42 1.00 16 41 H 0.15 1.20 7.05 -52.49 -0.37 0.83 16 42 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -31.67 368.96 -7.86 -39.52 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.16 Total: 2.64 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.73 Total: -4.14 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.30 Total: -37.39 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.16 Total: -20.56 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.67 -7.86 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439139745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.906 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds