Wall clock time and date at job start Tue Mar 31 2020 12:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47279 * 2 1 4 4 C 1.46497 * 119.99904 * 264.85286 * 3 2 1 5 5 C 1.50700 * 109.47082 * 268.05137 * 4 3 2 6 6 H 1.08000 * 119.99917 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00462 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00551 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46850 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47174 * 119.99556 * 9 7 5 12 12 H 1.48492 * 109.47546 * 240.00010 * 9 7 5 13 13 C 1.34777 * 119.99810 * 84.84786 * 3 2 1 14 14 O 1.21282 * 120.00029 * 3.95697 * 13 3 2 15 15 C 1.50701 * 119.99773 * 183.95111 * 13 3 2 16 16 H 1.08992 * 109.47041 * 314.32101 * 15 13 3 17 17 C 1.53000 * 109.46768 * 74.32457 * 15 13 3 18 18 C 1.52999 * 109.46816 * 194.31992 * 15 13 3 19 19 C 1.50698 * 109.46944 * 175.00228 * 18 15 13 20 20 O 1.21273 * 120.00271 * 359.97438 * 19 18 15 21 21 C 1.46982 * 120.00067 * 180.02562 * 19 18 15 22 22 C 1.39948 * 120.19495 * 359.97438 * 21 19 18 23 23 C 1.37770 * 119.85315 * 180.30398 * 22 21 19 24 24 C 1.38528 * 120.24571 * 359.42038 * 23 22 21 25 25 C 1.38227 * 120.40157 * 0.60420 * 24 23 22 26 26 C 1.38277 * 120.14253 * 359.68031 * 25 24 23 27 27 F 1.35098 * 120.12800 * 180.02562 * 26 25 24 28 28 H 1.09004 * 109.47403 * 59.99923 * 1 2 3 29 29 H 1.09003 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47469 * 299.99667 * 1 2 3 31 31 H 1.09006 * 109.46940 * 240.00056 * 2 1 3 32 32 H 1.08996 * 109.47390 * 120.00387 * 2 1 3 33 33 H 1.09002 * 109.47498 * 28.04851 * 4 3 2 34 34 H 1.08998 * 109.46946 * 148.05352 * 4 3 2 35 35 H 0.96996 * 120.00050 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47311 * 65.06770 * 17 15 13 37 37 H 1.09007 * 109.46911 * 185.06655 * 17 15 13 38 38 H 1.08994 * 109.47398 * 305.06444 * 17 15 13 39 39 H 1.09000 * 109.47107 * 55.00571 * 18 15 13 40 40 H 1.08996 * 109.47551 * 295.00298 * 18 15 13 41 41 H 1.07998 * 120.07766 * 0.02686 * 22 21 19 42 42 H 1.07999 * 119.87900 * 179.72030 * 23 22 21 43 43 H 1.08000 * 119.80085 * 180.30200 * 24 23 22 44 44 H 1.08000 * 119.93132 * 179.69512 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3698 2.0338 -1.2636 5 6 3.8356 1.8263 -1.5454 6 1 4.4444 1.2641 -0.8528 7 6 4.3996 2.3541 -2.6875 8 7 3.6582 3.0383 -3.5312 9 14 6.2166 2.0975 -3.0365 10 1 6.8233 1.3001 -1.9404 11 1 6.3761 1.3733 -4.3231 12 1 6.8951 3.4156 -3.1230 13 6 2.1441 2.0515 1.1625 14 8 1.9219 1.4891 2.2138 15 6 2.5610 3.4996 1.1560 16 1 3.4043 3.6319 0.4782 17 6 1.3896 4.3654 0.6878 18 6 2.9719 3.9184 2.5690 19 6 3.5044 5.3278 2.5404 20 8 3.5512 5.9372 1.4929 21 6 3.9682 5.9636 3.7818 22 6 3.9165 5.2640 4.9927 23 6 4.3472 5.8690 6.1531 24 6 4.8421 7.1625 6.1235 25 6 4.8974 7.8633 4.9333 26 6 4.4640 7.2740 3.7598 27 9 4.5186 7.9590 2.5967 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7798 1.6021 -2.0720 34 1 2.1613 3.1012 -1.1915 35 1 4.0548 3.4093 -4.3349 36 1 0.5789 4.3031 1.4137 37 1 1.7170 5.4011 0.5968 38 1 1.0385 4.0089 -0.2805 39 1 3.7460 3.2450 2.9369 40 1 2.1054 3.8707 3.2286 41 1 3.5358 4.2537 5.0183 42 1 4.3034 5.3311 7.0886 43 1 5.1824 7.6281 7.0367 44 1 5.2801 8.8731 4.9198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439139745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:48 Heat of formation + Delta-G solvation = -118.283218 kcal Electronic energy + Delta-G solvation = -27350.214468 eV Core-core repulsion = 23374.249247 eV Total energy + Delta-G solvation = -3975.965222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = -1.02 seconds Orbital eigenvalues (eV) -49.98147 -41.46933 -40.52437 -39.20673 -36.94410 -35.40474 -34.65180 -32.90032 -31.80330 -31.46756 -29.10457 -28.86463 -25.84651 -24.93124 -24.86428 -23.68473 -22.74465 -20.78794 -19.65552 -18.88898 -18.58363 -18.12956 -17.50975 -17.30290 -16.95454 -16.89243 -16.37075 -16.25856 -15.98924 -15.61179 -15.53520 -15.08595 -14.74524 -14.57862 -14.41339 -14.13537 -13.96030 -13.81709 -13.48515 -13.31033 -13.18248 -13.06734 -12.96396 -12.86273 -12.69828 -12.61199 -12.29955 -12.19785 -12.11093 -12.03274 -11.74085 -11.65313 -10.81244 -10.66395 -10.42770 -10.14780 -9.79000 -9.45839 -8.23080 -6.37322 -0.48189 0.18369 1.34435 1.35629 1.38564 1.48629 1.74933 2.25549 2.40233 2.64151 2.89883 3.07367 3.18790 3.57138 3.72843 3.81998 4.01394 4.02101 4.15458 4.23157 4.29219 4.35626 4.41510 4.49237 4.54778 4.63700 4.68556 4.79349 4.82979 4.90400 4.96787 5.02954 5.04250 5.07545 5.12173 5.16201 5.24043 5.28718 5.35110 5.36871 5.64184 5.83333 5.86403 6.04848 6.47382 6.55577 6.80143 7.28022 7.39179 8.82606 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.004009 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.285522 B = 6982.171331 C = 8452.240584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.548 4.548 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.272 1.272 12 H -0.283 1.283 13 C 0.523 3.477 14 O -0.585 6.585 15 C -0.099 4.099 16 H 0.080 0.920 17 C -0.136 4.136 18 C -0.132 4.132 19 C 0.390 3.610 20 O -0.475 6.475 21 C -0.225 4.225 22 C -0.044 4.044 23 C -0.135 4.135 24 C -0.048 4.048 25 C -0.172 4.172 26 C 0.117 3.883 27 F -0.144 7.144 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.038 0.962 35 H 0.267 0.733 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 5.255 20.666 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.329 5.329 4 C 0.125 3.875 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.180 4.180 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.198 1.198 12 H -0.209 1.209 13 C 0.312 3.688 14 O -0.468 6.468 15 C -0.120 4.120 16 H 0.099 0.901 17 C -0.193 4.193 18 C -0.169 4.169 19 C 0.270 3.730 20 O -0.352 6.352 21 C -0.227 4.227 22 C -0.062 4.062 23 C -0.153 4.153 24 C -0.065 4.065 25 C -0.191 4.191 26 C 0.097 3.903 27 F -0.123 7.123 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.178 0.822 42 H 0.191 0.809 43 H 0.195 0.805 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.726 5.376 20.388 21.097 hybrid contribution 0.987 0.153 -1.452 1.762 sum 0.261 5.529 18.936 19.728 Atomic orbital electron populations 1.22010 0.94626 1.03066 1.01272 1.21431 0.95213 0.82519 1.02319 1.48246 1.62726 1.14149 1.07731 1.19233 0.94456 0.93634 0.80210 1.21725 0.95481 1.34674 1.06733 0.93043 1.25654 1.02155 0.94478 0.95698 1.70013 1.37511 1.35816 1.12413 0.85568 0.80237 0.77910 0.78393 1.19311 1.19775 1.20851 1.20569 0.76236 0.88966 0.83027 1.90534 1.54157 1.70803 1.31311 1.20968 1.00860 0.91645 0.98503 0.90146 1.21784 0.96356 0.99930 1.01253 1.21783 1.04205 0.93851 0.97072 1.22730 0.73829 0.89267 0.87211 1.90587 1.44791 1.65614 1.34242 1.20707 1.09702 0.95155 0.97147 1.21754 0.94096 1.00394 0.89959 1.21697 0.98683 0.95683 0.99206 1.21783 0.93163 0.93824 0.97766 1.21481 1.03759 1.02872 0.90940 1.18527 0.99111 0.90180 0.82472 1.91525 1.93721 1.79093 1.47945 0.93143 0.89339 0.93463 0.90617 0.91209 0.96185 0.94446 0.92384 0.91217 0.91339 0.92855 0.87102 0.85643 0.82232 0.80921 0.80533 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.20 71.98 0.73 -3.92 16 2 C 0.11 3.98 6.10 86.38 0.53 4.51 16 3 N -0.60 -25.95 2.47 -826.17 -2.04 -27.99 16 4 C 0.25 12.27 4.64 85.63 0.40 12.67 16 5 C -0.55 -29.92 8.93 25.60 0.23 -29.69 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 7 C 0.02 1.14 5.46 84.65 0.46 1.60 16 8 N -0.92 -53.12 13.29 21.45 0.28 -52.83 16 9 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 C 0.52 21.87 6.84 87.66 0.60 22.47 16 14 O -0.59 -24.70 15.72 -3.04 -0.05 -24.75 16 15 C -0.10 -3.87 1.53 -11.54 -0.02 -3.89 16 16 H 0.08 3.78 6.83 -2.39 -0.02 3.76 16 17 C -0.14 -5.06 8.50 71.98 0.61 -4.45 16 18 C -0.13 -4.08 3.10 29.85 0.09 -3.98 16 19 C 0.39 12.78 6.85 27.98 0.19 12.97 16 20 O -0.48 -19.69 12.96 -3.01 -0.04 -19.73 16 21 C -0.23 -5.84 5.87 -20.11 -0.12 -5.95 16 22 C -0.04 -0.75 9.47 22.57 0.21 -0.54 16 23 C -0.14 -1.46 10.03 22.23 0.22 -1.24 16 24 C -0.05 -0.49 10.04 22.34 0.22 -0.27 16 25 C -0.17 -2.91 10.01 22.28 0.22 -2.69 16 26 C 0.12 3.08 7.29 22.74 0.17 3.24 16 27 F -0.14 -4.86 15.55 44.97 0.70 -4.16 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.57 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.78 8.03 -2.38 -0.02 2.76 16 32 H 0.07 2.54 7.53 -2.39 -0.02 2.53 16 33 H 0.02 1.05 8.06 -2.39 -0.02 1.03 16 34 H 0.04 1.97 4.63 -2.39 -0.01 1.96 16 35 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.07 2.65 6.06 -2.38 -0.01 2.64 16 38 H 0.05 2.14 6.07 -2.39 -0.01 2.12 16 39 H 0.11 3.20 8.09 -2.39 -0.02 3.18 16 40 H 0.13 3.29 8.04 -2.39 -0.02 3.27 16 41 H 0.16 2.17 7.05 -2.91 -0.02 2.15 16 42 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 44 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -71.89 368.96 6.65 -65.24 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.01 Total: 17.31 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.76 Total: 0.83 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.76 Total: -80.83 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.09 Total: -44.48 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.70 Total: -4.16 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -71.89 6.65 -65.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439139745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.044 kcal (2) G-P(sol) polarization free energy of solvation -71.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.02 seconds