Wall clock time and date at job start Tue Mar 31 2020 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46499 * 119.99866 * 2 1 4 4 C 1.34776 * 119.99911 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99787 * 0.02562 * 4 2 1 6 6 C 1.50696 * 119.99536 * 179.97438 * 4 2 1 7 7 O 1.42907 * 109.46880 * 179.97438 * 6 4 2 8 8 C 1.35972 * 116.99886 * 180.02562 * 7 6 4 9 9 C 1.38716 * 119.98744 * 359.72377 * 8 7 6 10 10 C 1.38096 * 120.01425 * 179.76469 * 9 8 7 11 11 C 1.38840 * 119.98623 * 0.51413 * 10 9 8 12 12 N 1.40148 * 120.01548 * 179.72214 * 11 10 9 13 13 C 1.34776 * 120.00062 * 213.29857 * 12 11 10 14 14 O 1.21604 * 119.99871 * 5.31273 * 13 12 11 15 15 N 1.34776 * 120.00276 * 185.31565 * 13 12 11 16 16 C 1.46502 * 119.99983 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.46887 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00063 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99719 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99602 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 119.99997 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46974 * 90.00366 * 21 19 17 23 23 H 1.48502 * 109.47018 * 210.00056 * 21 19 17 24 24 H 1.48497 * 109.47378 * 330.00213 * 21 19 17 25 25 C 1.38837 * 119.96740 * 359.74184 * 11 10 9 26 26 C 1.38088 * 119.99032 * 0.02562 * 25 11 10 27 27 H 1.08998 * 109.46907 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47255 * 300.00307 * 1 2 3 29 29 H 1.09000 * 109.46899 * 60.00010 * 1 2 3 30 30 H 1.08995 * 109.47527 * 270.00255 * 3 2 1 31 31 H 1.09007 * 109.46822 * 29.99697 * 3 2 1 32 32 H 1.08994 * 109.47103 * 149.99715 * 3 2 1 33 33 H 1.09007 * 109.47297 * 60.00763 * 6 4 2 34 34 H 1.08994 * 109.47857 * 300.00068 * 6 4 2 35 35 H 1.07992 * 119.99518 * 0.02832 * 9 8 7 36 36 H 1.08000 * 120.01231 * 180.23416 * 10 9 8 37 37 H 0.96998 * 120.00035 * 33.29095 * 12 11 10 38 38 H 0.96994 * 120.00045 * 359.97438 * 15 13 12 39 39 H 1.08997 * 109.47116 * 300.00139 * 16 15 13 40 40 H 1.09002 * 109.46988 * 60.00256 * 16 15 13 41 41 H 0.96999 * 119.99685 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00285 * 179.97438 * 25 11 10 43 43 H 1.08001 * 119.99688 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1671 -0.0001 7 8 4.1223 -2.5144 0.0013 8 6 5.4703 -2.6925 0.0015 9 6 6.3150 -1.5922 -0.0054 10 6 7.6842 -1.7725 -0.0002 11 6 8.2152 -3.0553 0.0010 12 7 9.6046 -3.2389 0.0003 13 6 10.1445 -4.2951 -0.6396 14 8 9.4371 -5.0344 -1.2966 15 7 11.4683 -4.5319 -0.5512 16 6 12.0550 -5.6804 -1.2463 17 6 13.5392 -5.7190 -0.9883 18 1 13.9995 -4.9635 -0.3689 19 6 14.3097 -6.7184 -1.5439 20 7 15.6051 -6.7518 -1.3191 21 14 13.5137 -8.0248 -2.6157 22 1 13.5196 -7.5749 -4.0310 23 1 14.2750 -9.2942 -2.4966 24 1 12.1136 -8.2437 -2.1718 25 6 7.3692 -4.1561 0.0024 26 6 6.0003 -3.9745 0.0022 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.3792 1.5835 -1.0276 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 4.0096 -0.6528 0.8895 34 1 4.0090 -0.6539 -0.8904 35 1 5.9019 -0.5945 -0.0104 36 1 8.3418 -0.9158 -0.0017 37 1 10.1777 -2.6057 0.4602 38 1 12.0326 -3.9420 -0.0273 39 1 11.5980 -6.5994 -0.8794 40 1 11.8751 -5.5875 -2.3173 41 1 16.1471 -7.4551 -1.7097 42 1 7.7817 -5.1542 0.0030 43 1 5.3420 -4.8308 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487862586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:33 Heat of formation + Delta-G solvation = -57.709776 kcal Electronic energy + Delta-G solvation = -25473.352840 eV Core-core repulsion = 21519.934242 eV Total energy + Delta-G solvation = -3953.418599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81477 -40.20751 -39.28801 -37.37657 -36.03585 -34.45614 -34.07955 -32.36580 -31.24139 -30.28990 -28.96123 -28.01262 -27.26121 -25.92907 -23.11413 -22.83153 -21.59779 -20.46661 -19.83610 -18.65434 -18.40162 -17.45624 -17.23631 -16.97630 -16.59617 -16.36838 -15.56364 -15.50276 -15.05134 -14.84745 -14.27175 -14.24097 -13.91644 -13.72463 -13.42573 -13.30013 -13.19962 -13.13752 -13.01027 -12.75825 -12.57294 -12.54838 -12.39277 -12.29731 -11.51866 -11.06153 -11.00702 -10.78928 -10.25245 -9.99230 -9.86464 -9.65329 -9.50336 -9.29853 -8.99757 -8.80568 -8.26867 -7.60603 -6.23433 -4.26032 1.30292 1.36791 2.06126 2.08554 3.02675 3.18845 3.26923 3.34364 3.42121 3.48653 3.91119 3.93586 4.32218 4.35091 4.51396 4.57036 4.71193 4.71406 4.75688 4.79445 4.84191 5.00724 5.03714 5.12184 5.23703 5.32998 5.38019 5.59512 5.78446 5.90418 5.93498 6.19821 6.33500 6.54804 6.65688 6.69623 6.93572 7.05624 7.13937 7.27464 7.29194 7.46218 7.61729 8.21939 8.55939 8.75059 9.03211 9.36561 10.88379 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.040558 B = 0.001853 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.203523 B =15104.246291 C =15575.046515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.622 5.622 3 C 0.073 3.927 4 C 0.516 3.484 5 O -0.513 6.513 6 C 0.045 3.955 7 O -0.293 6.293 8 C 0.099 3.901 9 C -0.189 4.189 10 C -0.116 4.116 11 C 0.149 3.851 12 N -0.693 5.693 13 C 0.692 3.308 14 O -0.586 6.586 15 N -0.715 5.715 16 C 0.237 3.763 17 C -0.545 4.545 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.892 5.892 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.081 4.081 26 C -0.123 4.123 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.404 0.596 38 H 0.394 0.606 39 H 0.026 0.974 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.147 0.853 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.766 20.231 5.447 33.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.359 5.359 3 C -0.070 4.070 4 C 0.302 3.698 5 O -0.387 6.387 6 C -0.034 4.034 7 O -0.206 6.206 8 C 0.053 3.947 9 C -0.209 4.209 10 C -0.137 4.137 11 C 0.053 3.947 12 N -0.341 5.341 13 C 0.392 3.608 14 O -0.464 6.464 15 N -0.367 5.367 16 C 0.115 3.885 17 C -0.583 4.583 18 H 0.098 0.902 19 C -0.125 4.125 20 N -0.529 5.529 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.184 1.184 25 C -0.101 4.101 26 C -0.142 4.142 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.239 0.761 38 H 0.228 0.772 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.164 0.836 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.592 18.634 4.784 32.821 hybrid contribution 0.530 0.413 -0.157 0.690 sum -26.062 19.047 4.627 32.610 Atomic orbital electron populations 1.21718 0.78379 1.04565 1.01483 1.47609 1.07455 1.05986 1.74870 1.21896 0.97328 0.85295 1.02485 1.20176 0.89178 0.83751 0.76657 1.90758 1.69688 1.30723 1.47522 1.22411 0.92222 0.85126 1.03633 1.86153 1.19508 1.25486 1.89423 1.18924 0.81306 0.94414 1.00012 1.20869 0.93536 0.97536 1.08923 1.20601 0.94636 0.95492 1.02971 1.17468 0.82543 0.93326 1.01344 1.42745 1.05173 1.29022 1.57207 1.16132 0.83335 0.81138 0.80178 1.90896 1.60633 1.49327 1.45518 1.45443 1.05011 1.32292 1.53955 1.19430 0.93719 0.83311 0.92073 1.21068 0.89721 1.13988 1.33509 0.90243 1.24774 0.94652 0.97387 0.95733 1.69877 1.04923 1.33852 1.44227 0.86814 0.80359 0.81236 0.81278 1.19827 1.20877 1.18400 1.21133 0.91454 0.99804 0.97730 1.20328 0.94670 0.94774 1.04411 0.89302 0.91935 0.91954 0.91945 0.90392 0.90813 0.89046 0.89005 0.85569 0.85436 0.76083 0.77215 0.95620 0.96128 0.92216 0.83553 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 10.69 59.85 0.64 1.05 16 2 N -0.62 -3.89 3.27 -189.52 -0.62 -4.51 16 3 C 0.07 0.17 10.29 59.85 0.62 0.78 16 4 C 0.52 5.03 7.75 -10.99 -0.09 4.95 16 5 O -0.51 -7.41 15.83 -14.35 -0.23 -7.64 16 6 C 0.04 0.36 3.77 36.00 0.14 0.50 16 7 O -0.29 -3.65 9.67 -39.56 -0.38 -4.04 16 8 C 0.10 1.22 6.69 -39.23 -0.26 0.96 16 9 C -0.19 -1.92 9.03 -39.46 -0.36 -2.27 16 10 C -0.12 -1.27 9.96 -39.41 -0.39 -1.66 16 11 C 0.15 2.09 6.28 -83.61 -0.53 1.57 16 12 N -0.69 -9.91 5.36 -14.18 -0.08 -9.98 16 13 C 0.69 13.23 8.30 -86.92 -0.72 12.50 16 14 O -0.59 -13.34 14.03 5.27 0.07 -13.27 16 15 N -0.72 -14.19 5.55 -66.41 -0.37 -14.55 16 16 C 0.24 5.76 4.50 -5.19 -0.02 5.74 16 17 C -0.54 -14.75 9.83 -34.44 -0.34 -15.08 16 18 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 21 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 25 C -0.08 -1.23 8.65 -39.42 -0.34 -1.57 16 26 C -0.12 -1.69 9.98 -39.46 -0.39 -2.08 16 27 H 0.09 0.65 6.90 -51.93 -0.36 0.29 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.08 0.06 8.07 -51.92 -0.42 -0.35 16 32 H 0.07 0.08 6.44 -51.93 -0.33 -0.25 16 33 H 0.09 0.49 6.93 -51.93 -0.36 0.13 16 34 H 0.09 0.53 7.61 -51.93 -0.40 0.14 16 35 H 0.13 0.83 6.29 -52.49 -0.33 0.50 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.40 4.31 8.83 -40.82 -0.36 3.95 16 38 H 0.39 6.74 8.34 -40.82 -0.34 6.40 16 39 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 40 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.15 2.52 6.41 -52.48 -0.34 2.18 16 43 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -36.94 364.36 -7.85 -44.78 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.69 Total: 5.04 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -2.15 Total: 7.47 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.29 Total: -54.50 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.54 Total: -24.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.94 -7.85 -44.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487862586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.928 kcal (2) G-P(sol) polarization free energy of solvation -36.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds