Wall clock time and date at job start Tue Mar 31 2020 12:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47216 * 2 1 4 4 C 1.34773 * 120.00295 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99822 * 180.27194 * 4 3 2 7 7 O 1.42903 * 109.46910 * 179.72597 * 6 4 3 8 8 C 1.35903 * 117.00212 * 180.02562 * 7 6 4 9 9 C 1.38814 * 120.01489 * 359.72594 * 8 7 6 10 10 C 1.38168 * 120.07732 * 179.69976 * 9 8 7 11 11 C 1.38165 * 120.12759 * 0.59730 * 10 9 8 12 12 C 1.38889 * 120.03853 * 359.67954 * 11 10 9 13 13 N 1.39939 * 120.04345 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00061 * 213.27512 * 13 12 11 15 15 O 1.21589 * 119.99956 * 5.31480 * 14 13 12 16 16 N 1.34775 * 120.00105 * 185.31255 * 14 13 12 17 17 C 1.46506 * 120.00027 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47049 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99960 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00007 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99785 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47243 * 59.99871 * 22 20 18 24 24 H 1.48497 * 109.47029 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47107 * 299.99818 * 22 20 18 26 26 C 1.38579 * 120.02156 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47378 * 60.00456 * 1 2 3 28 28 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47130 * 300.00012 * 1 2 3 30 30 H 1.08999 * 109.47576 * 240.00273 * 2 1 3 31 31 H 1.09002 * 109.47657 * 119.99935 * 2 1 3 32 32 H 0.96999 * 119.99270 * 0.02562 * 3 2 1 33 33 H 1.08994 * 109.47725 * 299.72623 * 6 4 3 34 34 H 1.09000 * 109.47149 * 59.72827 * 6 4 3 35 35 H 1.07994 * 119.95830 * 359.97419 * 9 8 7 36 36 H 1.07999 * 119.93545 * 180.27555 * 10 9 8 37 37 H 1.08001 * 119.98754 * 179.70259 * 11 10 9 38 38 H 0.97003 * 120.00236 * 33.26713 * 13 12 11 39 39 H 0.97001 * 119.99918 * 0.02562 * 16 14 13 40 40 H 1.08997 * 109.46716 * 300.00055 * 17 16 14 41 41 H 1.08992 * 109.47065 * 60.00042 * 17 16 14 42 42 H 0.96999 * 119.99699 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.06155 * 359.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8456 3.0484 0.0057 7 8 5.2746 3.0484 0.0103 8 6 5.8916 4.2593 0.0167 9 6 5.1359 5.4237 0.0128 10 6 5.7618 6.6554 0.0256 11 6 7.1413 6.7323 0.0298 12 6 7.9024 5.5705 0.0280 13 7 9.2996 5.6483 0.0329 14 6 10.0288 4.7139 -0.6086 15 8 9.4737 3.8591 -1.2717 16 7 11.3732 4.7269 -0.5152 17 6 12.1659 3.7114 -1.2130 18 6 13.6304 3.9473 -0.9473 19 1 13.9398 4.7715 -0.3216 20 6 14.5753 3.1117 -1.5038 21 7 14.1985 2.1084 -2.2661 22 14 16.3907 3.4045 -1.1751 23 1 16.6498 3.3173 0.2845 24 1 17.1941 2.3751 -1.8823 25 1 16.7713 4.7534 -1.6657 26 6 7.2755 4.3323 0.0220 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3879 2.1185 0.0004 33 1 3.4852 3.5651 -0.8837 34 1 3.4794 3.5593 0.8961 35 1 4.0575 5.3667 0.0042 36 1 5.1716 7.5599 0.0270 37 1 7.6282 7.6963 0.0350 38 1 9.7434 6.3748 0.4978 39 1 11.8161 5.4086 0.0140 40 1 11.8864 2.7215 -0.8525 41 1 11.9758 3.7751 -2.2843 42 1 14.8633 1.5203 -2.6574 43 1 7.8649 3.4274 0.0214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487886713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:52 Heat of formation + Delta-G solvation = -74.494952 kcal Electronic energy + Delta-G solvation = -25489.182701 eV Core-core repulsion = 21535.036242 eV Total energy + Delta-G solvation = -3954.146459 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64439 -39.99353 -39.07770 -37.29227 -35.62178 -34.41574 -33.99590 -32.33279 -31.60846 -30.46158 -29.26301 -28.08269 -26.95480 -23.62285 -23.23405 -22.51257 -21.83626 -20.92359 -20.17850 -18.65907 -18.19251 -17.44083 -16.66483 -16.61568 -16.19027 -15.93368 -15.68209 -15.49444 -15.35973 -14.77155 -14.67761 -14.07926 -14.02183 -13.74635 -13.57921 -13.10546 -13.00264 -12.95258 -12.67033 -12.31067 -12.03856 -11.96893 -11.90275 -11.80917 -11.36135 -11.17234 -10.97376 -10.87305 -10.29679 -10.12513 -10.02660 -9.50544 -9.45266 -9.39302 -8.73329 -8.29255 -8.08514 -7.73550 -6.14362 -4.21724 1.37678 1.49884 2.27514 2.28501 3.10381 3.27091 3.32077 3.33753 3.50564 3.62171 4.03822 4.26751 4.33450 4.54507 4.61566 4.62865 4.74927 4.85172 4.87019 4.93625 5.04826 5.21353 5.21561 5.34801 5.36798 5.44667 5.56690 5.60312 5.93706 5.98461 6.27160 6.31030 6.45207 6.52382 6.96956 7.05694 7.07901 7.40856 7.42588 7.51272 7.55203 7.83716 7.85854 8.00717 8.69911 8.85091 9.20702 9.45123 10.95709 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002174 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.992846 B =12879.343492 C =14501.088995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.732 5.732 4 C 0.512 3.488 5 O -0.508 6.508 6 C 0.043 3.957 7 O -0.287 6.287 8 C 0.146 3.854 9 C -0.238 4.238 10 C -0.061 4.061 11 C -0.191 4.191 12 C 0.223 3.777 13 N -0.694 5.694 14 C 0.688 3.312 15 O -0.576 6.576 16 N -0.721 5.721 17 C 0.265 3.735 18 C -0.545 4.545 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.151 4.151 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.405 0.595 39 H 0.388 0.612 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.235 7.437 7.421 30.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.388 5.388 4 C 0.297 3.703 5 O -0.381 6.381 6 C -0.036 4.036 7 O -0.199 6.199 8 C 0.100 3.900 9 C -0.258 4.258 10 C -0.080 4.080 11 C -0.212 4.212 12 C 0.126 3.874 13 N -0.342 5.342 14 C 0.388 3.612 15 O -0.453 6.453 16 N -0.372 5.372 17 C 0.144 3.856 18 C -0.583 4.583 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.733 3.267 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.173 4.173 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.240 0.760 39 H 0.221 0.779 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.819 5.505 6.657 29.129 hybrid contribution 0.917 1.329 0.526 1.698 sum -26.902 6.833 7.182 28.670 Atomic orbital electron populations 1.22006 0.94203 1.03450 1.02547 1.21333 0.94264 0.82411 1.02852 1.45866 1.06458 1.09332 1.77101 1.20162 0.82541 0.90688 0.76941 1.90809 1.54963 1.45807 1.46485 1.22383 0.82115 0.95310 1.03766 1.86196 1.17970 1.26964 1.88759 1.18727 0.91812 0.83432 0.96004 1.21057 0.99468 0.92348 1.12945 1.20580 0.93665 0.96788 0.96977 1.20767 0.93923 0.96900 1.09616 1.17156 0.82224 0.92742 0.95316 1.42874 1.04008 1.30474 1.56860 1.16198 0.82720 0.81859 0.80436 1.90937 1.70705 1.38848 1.44772 1.45784 1.03164 1.34709 1.53585 1.19067 0.88433 0.85799 0.92254 1.21162 0.90402 1.14451 1.32300 0.91923 1.24947 0.99591 0.94758 0.94708 1.69970 1.34566 1.16056 1.31501 0.86449 0.83853 0.77973 0.78457 1.20081 1.21063 1.20093 1.20426 0.91396 0.98891 1.06538 0.91881 0.90594 0.91909 0.91197 0.91243 0.76499 0.88953 0.89000 0.85867 0.85623 0.85665 0.75953 0.77910 0.95388 0.95463 0.92336 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.55 10.03 37.16 0.37 -0.17 16 2 C 0.11 0.75 6.39 -4.04 -0.03 0.72 16 3 N -0.73 -4.94 5.56 -60.29 -0.33 -5.28 16 4 C 0.51 5.72 7.91 -10.99 -0.09 5.64 16 5 O -0.51 -8.57 16.50 -14.36 -0.24 -8.80 16 6 C 0.04 0.41 5.22 36.00 0.19 0.60 16 7 O -0.29 -4.37 9.67 -39.34 -0.38 -4.75 16 8 C 0.15 2.17 6.68 -39.24 -0.26 1.91 16 9 C -0.24 -2.63 9.04 -39.39 -0.36 -2.99 16 10 C -0.06 -0.63 10.03 -39.63 -0.40 -1.03 16 11 C -0.19 -2.28 9.96 -39.37 -0.39 -2.68 16 12 C 0.22 3.46 6.28 -83.71 -0.53 2.94 16 13 N -0.69 -10.93 5.35 -14.24 -0.08 -11.01 16 14 C 0.69 14.46 8.30 -86.92 -0.72 13.74 16 15 O -0.58 -14.65 14.03 5.29 0.07 -14.58 16 16 N -0.72 -15.42 5.55 -66.42 -0.37 -15.79 16 17 C 0.27 7.15 5.43 -5.19 -0.03 7.12 16 18 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.88 -26.38 13.29 55.43 0.74 -25.64 16 22 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.15 -2.66 8.59 -39.25 -0.34 -3.00 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.40 1.23 8.47 -40.82 -0.35 0.88 16 33 H 0.09 0.63 7.65 -51.93 -0.40 0.23 16 34 H 0.09 0.58 7.67 -51.93 -0.40 0.18 16 35 H 0.12 0.92 6.29 -52.49 -0.33 0.59 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.41 4.75 8.83 -40.82 -0.36 4.39 16 39 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 43 H 0.15 3.13 6.41 -52.49 -0.34 2.80 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -38.44 372.07 -8.84 -47.28 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.85 Total: 7.67 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -2.99 Total: 9.29 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.04 Total: -57.71 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.54 Total: -28.13 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.44 -8.84 -47.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487886713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.215 kcal (2) G-P(sol) polarization free energy of solvation -38.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds