Wall clock time and date at job start Tue Mar 31 2020 12:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47216 * 2 1 4 4 C 1.34773 * 120.00295 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99822 * 180.27194 * 4 3 2 7 7 O 1.42903 * 109.46910 * 179.72597 * 6 4 3 8 8 C 1.35903 * 117.00212 * 180.02562 * 7 6 4 9 9 C 1.38814 * 120.01489 * 359.72594 * 8 7 6 10 10 C 1.38168 * 120.07732 * 179.69976 * 9 8 7 11 11 C 1.38165 * 120.12759 * 0.59730 * 10 9 8 12 12 C 1.38889 * 120.03853 * 359.67954 * 11 10 9 13 13 N 1.39939 * 120.04345 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00061 * 213.27512 * 13 12 11 15 15 O 1.21589 * 119.99956 * 5.31480 * 14 13 12 16 16 N 1.34775 * 120.00105 * 185.31255 * 14 13 12 17 17 C 1.46506 * 120.00027 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47049 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99960 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00007 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99785 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00078 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47243 * 59.99871 * 22 20 18 24 24 H 1.48497 * 109.47029 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47107 * 299.99818 * 22 20 18 26 26 C 1.38579 * 120.02156 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47378 * 60.00456 * 1 2 3 28 28 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47130 * 300.00012 * 1 2 3 30 30 H 1.08999 * 109.47576 * 240.00273 * 2 1 3 31 31 H 1.09002 * 109.47657 * 119.99935 * 2 1 3 32 32 H 0.96999 * 119.99270 * 0.02562 * 3 2 1 33 33 H 1.08994 * 109.47725 * 299.72623 * 6 4 3 34 34 H 1.09000 * 109.47149 * 59.72827 * 6 4 3 35 35 H 1.07994 * 119.95830 * 359.97419 * 9 8 7 36 36 H 1.07999 * 119.93545 * 180.27555 * 10 9 8 37 37 H 1.08001 * 119.98754 * 179.70259 * 11 10 9 38 38 H 0.97003 * 120.00236 * 33.26713 * 13 12 11 39 39 H 0.97001 * 119.99918 * 0.02562 * 16 14 13 40 40 H 1.08997 * 109.46716 * 300.00055 * 17 16 14 41 41 H 1.08992 * 109.47065 * 60.00042 * 17 16 14 42 42 H 0.96999 * 119.99699 * 180.02562 * 21 20 18 43 43 H 1.07995 * 120.06155 * 359.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0015 6 6 3.8456 3.0484 0.0057 7 8 5.2746 3.0484 0.0103 8 6 5.8916 4.2593 0.0167 9 6 5.1359 5.4237 0.0128 10 6 5.7618 6.6554 0.0256 11 6 7.1413 6.7323 0.0298 12 6 7.9024 5.5705 0.0280 13 7 9.2996 5.6483 0.0329 14 6 10.0288 4.7139 -0.6086 15 8 9.4737 3.8591 -1.2717 16 7 11.3732 4.7269 -0.5152 17 6 12.1659 3.7114 -1.2130 18 6 13.6304 3.9473 -0.9473 19 1 13.9398 4.7715 -0.3216 20 6 14.5753 3.1117 -1.5038 21 7 14.1985 2.1084 -2.2661 22 14 16.3907 3.4045 -1.1751 23 1 16.6498 3.3173 0.2845 24 1 17.1941 2.3751 -1.8823 25 1 16.7713 4.7534 -1.6657 26 6 7.2755 4.3323 0.0220 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3879 2.1185 0.0004 33 1 3.4852 3.5651 -0.8837 34 1 3.4794 3.5593 0.8961 35 1 4.0575 5.3667 0.0042 36 1 5.1716 7.5599 0.0270 37 1 7.6282 7.6963 0.0350 38 1 9.7434 6.3748 0.4978 39 1 11.8161 5.4086 0.0140 40 1 11.8864 2.7215 -0.8525 41 1 11.9758 3.7751 -2.2843 42 1 14.8633 1.5203 -2.6574 43 1 7.8649 3.4274 0.0214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487886713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:51 Heat of formation + Delta-G solvation = -105.805874 kcal Electronic energy + Delta-G solvation = -25490.540444 eV Core-core repulsion = 21535.036242 eV Total energy + Delta-G solvation = -3955.504202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80015 -41.17647 -40.23219 -38.45344 -36.39737 -36.24714 -35.51981 -34.35986 -32.33140 -31.37073 -30.53601 -28.96029 -28.75559 -25.15899 -24.01992 -23.83100 -22.94362 -22.05541 -21.56064 -19.98298 -19.62125 -18.34908 -18.11043 -17.51025 -17.47509 -17.20680 -16.78217 -16.71529 -16.48520 -16.16354 -16.08331 -15.55132 -15.09019 -14.89375 -14.75979 -14.49923 -14.15104 -14.06575 -13.95186 -13.55085 -13.36770 -12.93701 -12.71505 -12.71094 -12.67728 -12.44697 -12.36113 -12.24670 -12.17277 -11.52810 -11.34520 -11.16159 -11.00621 -10.81272 -10.23151 -9.96722 -9.38857 -8.97488 -8.29694 -6.47254 0.32226 0.49047 1.42071 1.42531 1.47810 1.48720 1.55904 1.73418 2.07751 2.38166 2.64984 2.87621 3.05161 3.40941 3.59067 3.93115 4.04476 4.10051 4.11206 4.19591 4.21017 4.31060 4.41037 4.50067 4.58199 4.74613 4.91382 5.02860 5.04223 5.21450 5.26143 5.30530 5.33939 5.35965 5.38425 5.42745 5.51446 5.63021 5.80152 5.89367 6.17077 6.34557 6.52112 6.63545 7.13331 7.14409 7.23468 7.56647 8.82537 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002174 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.992846 B =12879.343492 C =14501.088995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.108 3.892 3 N -0.707 5.707 4 C 0.506 3.494 5 O -0.581 6.581 6 C 0.038 3.962 7 O -0.331 6.331 8 C 0.132 3.868 9 C -0.219 4.219 10 C -0.047 4.047 11 C -0.179 4.179 12 C 0.193 3.807 13 N -0.672 5.672 14 C 0.688 3.312 15 O -0.627 6.627 16 N -0.713 5.713 17 C 0.284 3.716 18 C -0.557 4.557 19 H 0.087 0.913 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.990 3.010 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.259 1.259 26 C -0.197 4.197 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.423 0.577 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.171 0.829 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.427 0.573 39 H 0.408 0.592 40 H -0.016 1.016 41 H -0.012 1.012 42 H 0.269 0.731 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.517 11.814 8.709 33.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.362 5.362 4 C 0.292 3.708 5 O -0.460 6.460 6 C -0.040 4.040 7 O -0.245 6.245 8 C 0.087 3.913 9 C -0.238 4.238 10 C -0.065 4.065 11 C -0.200 4.200 12 C 0.097 3.903 13 N -0.321 5.321 14 C 0.388 3.612 15 O -0.508 6.508 16 N -0.367 5.367 17 C 0.161 3.839 18 C -0.594 4.594 19 H 0.105 0.895 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.813 3.187 23 H -0.187 1.187 24 H -0.212 1.212 25 H -0.184 1.184 26 C -0.218 4.218 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.262 0.738 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.188 0.812 36 H 0.195 0.805 37 H 0.176 0.824 38 H 0.266 0.734 39 H 0.245 0.755 40 H 0.002 0.998 41 H 0.006 0.994 42 H 0.078 0.922 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -30.205 9.997 8.005 32.808 hybrid contribution 1.363 -0.039 0.138 1.370 sum -28.842 9.958 8.143 31.581 Atomic orbital electron populations 1.21946 0.91011 1.04326 1.03749 1.21425 0.96719 0.82032 1.01337 1.45728 1.05422 1.10355 1.74725 1.20708 0.83302 0.90962 0.75851 1.90783 1.57011 1.47935 1.50290 1.22790 0.79442 0.94531 1.07214 1.86140 1.21274 1.28047 1.89038 1.18849 0.91032 0.84797 0.96660 1.21561 1.01521 0.90828 1.09916 1.21223 0.93133 0.98268 0.93922 1.21165 0.94766 0.96444 1.07612 1.17458 0.81693 0.93495 0.97617 1.42448 1.04364 1.29474 1.55851 1.16344 0.82509 0.82108 0.80247 1.90911 1.71621 1.41195 1.47060 1.45304 1.03343 1.34304 1.53732 1.18473 0.89818 0.85353 0.90266 1.21563 0.90146 1.15192 1.32533 0.89457 1.26128 1.05497 0.94113 0.94048 1.70154 1.36588 1.17392 1.32867 0.85132 0.76452 0.78321 0.78830 1.18659 1.21163 1.18377 1.20282 0.93105 0.97902 1.10551 0.90713 0.89969 0.90527 0.93016 0.92748 0.73832 0.85501 0.84872 0.81210 0.80519 0.82391 0.73425 0.75547 0.99796 0.99399 0.92214 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.03 71.98 0.72 0.00 16 2 C 0.11 1.42 6.39 86.38 0.55 1.97 16 3 N -0.71 -8.72 5.56 -463.06 -2.57 -11.29 16 4 C 0.51 11.44 7.91 87.66 0.69 12.13 16 5 O -0.58 -21.35 16.50 16.00 0.26 -21.08 16 6 C 0.04 0.65 5.22 71.24 0.37 1.02 16 7 O -0.33 -10.53 9.67 -73.42 -0.71 -11.24 16 8 C 0.13 3.94 6.68 22.49 0.15 4.09 16 9 C -0.22 -3.93 9.04 22.39 0.20 -3.73 16 10 C -0.05 -0.72 10.03 22.24 0.22 -0.49 16 11 C -0.18 -3.66 9.96 22.41 0.22 -3.44 16 12 C 0.19 6.04 6.28 38.14 0.24 6.27 16 13 N -0.67 -21.59 5.35 -317.23 -1.70 -23.29 16 14 C 0.69 30.85 8.30 179.06 1.49 32.34 16 15 O -0.63 -35.10 14.03 -4.00 -0.06 -35.16 16 16 N -0.71 -32.04 5.55 -482.30 -2.68 -34.72 16 17 C 0.28 16.38 5.43 85.63 0.46 16.84 16 18 C -0.56 -31.08 9.28 25.60 0.24 -30.84 16 19 H 0.09 4.34 7.60 -2.91 -0.02 4.31 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 22 Si 0.99 43.20 29.54 68.60 2.03 45.23 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 C -0.20 -7.46 8.59 22.48 0.19 -7.26 16 27 H 0.07 0.21 8.14 -2.39 -0.02 0.20 16 28 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.42 1.29 8.47 -92.71 -0.79 0.50 16 33 H 0.13 1.26 7.65 -2.39 -0.02 1.25 16 34 H 0.13 1.14 7.67 -2.39 -0.02 1.12 16 35 H 0.17 1.40 6.29 -2.91 -0.02 1.38 16 36 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.43 9.55 8.83 -92.71 -0.82 8.73 16 39 H 0.41 14.72 8.34 -92.71 -0.77 13.94 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.09 4.43 6.41 -2.91 -0.02 4.41 16 Total: -1.00 -97.05 372.07 -0.22 -97.27 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -1.31 Total: 22.51 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 6.22 Total: 29.47 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -6.66 Total: -127.01 kcal Atomic # 8 Polarization: -66.97 SS G_CDS: -0.50 Total: -67.47 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -97.05 -0.22 -97.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487886713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.532 kcal (2) G-P(sol) polarization free energy of solvation -97.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds