Wall clock time and date at job start Tue Mar 31 2020 13:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35791 * 116.99530 * 2 1 4 4 C 1.38810 * 119.94109 * 359.97438 * 3 2 1 5 5 C 1.37792 * 120.16503 * 179.97438 * 4 3 2 6 6 C 1.39707 * 120.03776 * 0.04608 * 5 4 3 7 7 C 1.47618 * 120.06751 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00105 * 202.47736 * 7 6 5 9 9 N 1.34770 * 119.99613 * 22.48004 * 7 6 5 10 10 C 1.46507 * 119.99901 * 184.61386 * 9 7 6 11 11 C 1.46506 * 120.00335 * 4.61635 * 9 7 6 12 12 C 1.39705 * 119.87144 * 0.23076 * 6 5 4 13 13 C 1.38283 * 119.83389 * 359.44689 * 12 6 5 14 14 N 1.40194 * 120.01800 * 180.29764 * 13 12 6 15 15 C 1.34774 * 120.00173 * 23.71957 * 14 13 12 16 16 O 1.21597 * 119.99871 * 4.20762 * 15 14 13 17 17 N 1.34775 * 120.00307 * 184.20380 * 15 14 13 18 18 C 1.46500 * 119.99971 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46742 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00091 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99868 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00140 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46961 * 89.99924 * 23 21 19 25 25 H 1.48498 * 109.47347 * 209.99888 * 23 21 19 26 26 H 1.48505 * 109.47224 * 330.00323 * 23 21 19 27 27 H 1.08998 * 109.47220 * 299.99922 * 1 2 3 28 28 H 1.09004 * 109.47189 * 60.00783 * 1 2 3 29 29 H 1.09007 * 109.46835 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.91166 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.97901 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46625 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.46847 * 60.00603 * 10 9 7 34 34 H 1.08996 * 109.47047 * 300.00112 * 10 9 7 35 35 H 1.08993 * 109.47256 * 263.95638 * 11 9 7 36 36 H 1.09001 * 109.46654 * 23.95447 * 11 9 7 37 37 H 1.08997 * 109.47133 * 143.95003 * 11 9 7 38 38 H 1.08005 * 120.08208 * 179.75029 * 12 6 5 39 39 H 0.97003 * 119.99862 * 203.71974 * 14 13 12 40 40 H 0.97002 * 119.99646 * 0.02562 * 17 15 14 41 41 H 1.09003 * 109.47221 * 299.99912 * 18 17 15 42 42 H 1.08993 * 109.47042 * 60.00431 * 18 17 15 43 43 H 0.96994 * 119.99963 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2100 0.0000 4 6 1.2881 2.3733 -0.0005 5 6 1.9087 3.6035 0.0000 6 6 3.3035 3.6831 0.0001 7 6 3.9691 5.0007 0.0001 8 8 5.1117 5.1046 -0.4024 9 7 3.3102 6.0884 0.4463 10 6 3.9326 7.4114 0.3528 11 6 1.9716 5.9479 1.0249 12 6 4.0672 2.5133 -0.0052 13 6 3.4389 1.2815 0.0010 14 7 4.2015 0.1051 0.0020 15 6 5.4664 0.1224 0.4669 16 8 5.9206 1.1390 0.9558 17 7 6.2279 -0.9869 0.3900 18 6 7.6031 -0.9678 0.8948 19 6 8.2317 -2.3222 0.6911 20 1 7.6636 -3.1177 0.2319 21 6 9.5319 -2.5461 1.0918 22 7 10.2232 -1.5778 1.6524 23 14 10.3110 -4.2251 0.8399 24 1 10.9751 -4.2684 -0.4876 25 1 11.3168 -4.4689 1.9048 26 1 9.2603 -5.2727 0.9021 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2096 2.3139 -0.0005 31 1 1.3166 4.5067 0.0000 32 1 3.2549 8.1613 0.7608 33 1 4.1428 7.6410 -0.6918 34 1 4.8632 7.4160 0.9202 35 1 1.2221 6.1490 0.2596 36 1 1.8433 4.9331 1.4014 37 1 1.8537 6.6570 1.8442 38 1 5.1457 2.5709 -0.0092 39 1 3.8188 -0.7213 -0.3318 40 1 5.8657 -1.7977 -0.0003 41 1 8.1781 -0.2158 0.3545 42 1 7.5966 -0.7261 1.9576 43 1 11.1379 -1.7352 1.9339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488338583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:18 Heat of formation + Delta-G solvation = -38.268692 kcal Electronic energy + Delta-G solvation = -26752.606427 eV Core-core repulsion = 22800.030857 eV Total energy + Delta-G solvation = -3952.575570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97368 -39.77025 -39.18831 -37.06610 -35.80855 -34.61359 -34.08047 -32.36185 -30.62170 -30.09460 -28.41561 -27.50423 -26.82452 -26.32022 -23.38820 -22.81081 -22.07850 -20.26027 -19.93230 -18.42520 -18.02947 -17.68317 -16.75639 -16.13543 -16.09112 -15.90012 -15.82027 -15.29211 -14.88434 -14.79095 -14.41198 -14.09274 -13.96646 -13.61872 -13.33080 -13.09403 -13.01990 -12.93467 -12.67289 -12.48826 -12.13087 -12.04013 -11.97039 -11.89535 -11.30455 -10.98067 -10.94147 -10.87824 -10.31884 -10.27487 -9.85250 -9.36922 -9.35329 -8.87527 -8.72968 -8.58963 -8.01523 -7.56630 -6.13751 -4.20718 0.89848 1.31006 2.78480 2.85707 2.97140 3.19643 3.26721 3.33064 3.35771 3.64046 4.00399 4.33635 4.43210 4.55022 4.71573 4.77833 4.89540 4.91191 5.00521 5.01925 5.08170 5.20372 5.22346 5.23501 5.35199 5.43068 5.48356 5.64009 5.78866 5.94565 6.02934 6.27835 6.30387 6.57524 6.86158 7.05283 7.21788 7.26618 7.44309 7.52874 7.56414 7.84987 8.01751 8.16616 8.71305 8.85841 9.21054 9.46005 10.96420 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003053 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.476189 B = 9168.917677 C =11041.662893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.110 3.890 4 C -0.197 4.197 5 C -0.101 4.101 6 C -0.151 4.151 7 C 0.562 3.438 8 O -0.525 6.525 9 N -0.623 5.623 10 C 0.091 3.909 11 C 0.062 3.938 12 C -0.043 4.043 13 C 0.153 3.847 14 N -0.683 5.683 15 C 0.689 3.311 16 O -0.579 6.579 17 N -0.719 5.719 18 C 0.265 3.735 19 C -0.543 4.543 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.905 3.095 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.174 0.826 39 H 0.408 0.592 40 H 0.389 0.611 41 H 0.029 0.971 42 H 0.028 0.972 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.399 11.131 -3.326 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.061 3.939 4 C -0.217 4.217 5 C -0.120 4.120 6 C -0.155 4.155 7 C 0.352 3.648 8 O -0.401 6.401 9 N -0.358 5.358 10 C -0.051 4.051 11 C -0.080 4.080 12 C -0.064 4.064 13 C 0.055 3.945 14 N -0.331 5.331 15 C 0.390 3.610 16 O -0.457 6.457 17 N -0.371 5.371 18 C 0.144 3.856 19 C -0.582 4.582 20 H 0.081 0.919 21 C -0.140 4.140 22 N -0.521 5.521 23 Si 0.732 3.268 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.153 0.847 31 H 0.166 0.834 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.191 0.809 39 H 0.244 0.756 40 H 0.222 0.778 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.939 11.884 -2.983 26.893 hybrid contribution -0.295 -1.531 -0.352 1.598 sum -24.234 10.354 -3.335 26.563 Atomic orbital electron populations 1.23063 0.78137 1.04024 1.01346 1.85999 1.21565 1.26536 1.88735 1.18906 0.90298 0.85041 0.99617 1.20882 0.99725 0.91382 1.09667 1.21798 0.93637 0.98265 0.98309 1.19582 0.93380 0.93031 1.09543 1.18264 0.85454 0.83710 0.77367 1.90821 1.17100 1.85605 1.46564 1.47578 1.18181 1.07445 1.62552 1.21604 0.98614 0.82569 1.02321 1.22530 0.83189 1.04303 0.98020 1.21659 1.03215 0.88091 0.93477 1.16778 0.86327 0.87096 1.04286 1.42648 1.13372 1.10534 1.66510 1.16171 0.80005 0.85316 0.79541 1.90853 1.72452 1.31652 1.50755 1.45773 1.16245 1.11090 1.63960 1.19076 0.73996 0.97521 0.94969 1.21203 0.98377 0.96581 1.42017 0.91876 1.24945 0.96855 0.97491 0.94708 1.69979 1.10471 1.32092 1.39586 0.86399 0.79076 0.83370 0.77948 1.20457 1.21011 1.19784 0.92534 0.92587 0.88197 0.84747 0.83420 0.90789 0.92102 0.91873 0.92177 0.88737 0.91421 0.80892 0.75644 0.77844 0.95340 0.95432 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.47 9.87 -19.09 -0.19 -3.66 16 3 C 0.11 1.39 6.71 -38.89 -0.26 1.13 16 4 C -0.20 -1.96 9.01 -39.53 -0.36 -2.31 16 5 C -0.10 -1.05 7.53 -39.20 -0.30 -1.35 16 6 C -0.15 -2.23 5.56 -104.97 -0.58 -2.81 16 7 C 0.56 8.80 7.51 -12.44 -0.09 8.71 16 8 O -0.52 -10.51 16.56 5.30 0.09 -10.42 16 9 N -0.62 -6.98 3.27 -190.73 -0.62 -7.61 16 10 C 0.09 0.85 10.17 59.85 0.61 1.46 16 11 C 0.06 0.42 8.62 59.85 0.52 0.94 16 12 C -0.04 -0.77 8.27 -39.02 -0.32 -1.09 16 13 C 0.15 2.46 6.46 -83.53 -0.54 1.92 16 14 N -0.68 -11.43 5.31 -14.14 -0.08 -11.50 16 15 C 0.69 14.73 8.40 -86.92 -0.73 14.00 16 16 O -0.58 -14.62 13.40 5.28 0.07 -14.55 16 17 N -0.72 -15.64 5.55 -66.42 -0.37 -16.01 16 18 C 0.27 7.17 5.43 -5.19 -0.03 7.14 16 19 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 20 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 21 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.88 -26.41 13.29 55.43 0.74 -25.67 16 23 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 28 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 29 H 0.10 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.13 0.87 6.27 -52.48 -0.33 0.54 16 31 H 0.15 1.05 4.19 -52.49 -0.22 0.83 16 32 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.28 7.22 -51.93 -0.37 -0.09 16 36 H 0.09 0.69 4.91 -51.93 -0.26 0.44 16 37 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 38 H 0.17 3.80 5.40 -52.48 -0.28 3.51 16 39 H 0.41 5.60 8.32 -40.82 -0.34 5.26 16 40 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -37.00 358.83 -6.90 -43.90 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.41 Total: 8.67 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: -1.51 Total: 15.38 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.33 Total: -60.79 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.03 Total: -28.63 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.00 -6.90 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488338583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.629 kcal (2) G-P(sol) polarization free energy of solvation -36.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds