Wall clock time and date at job start Tue Mar 31 2020 13:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35791 * 116.99530 * 2 1 4 4 C 1.38810 * 119.94109 * 359.97438 * 3 2 1 5 5 C 1.37792 * 120.16503 * 179.97438 * 4 3 2 6 6 C 1.39707 * 120.03776 * 0.04608 * 5 4 3 7 7 C 1.47618 * 120.06751 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00105 * 202.47736 * 7 6 5 9 9 N 1.34770 * 119.99613 * 22.48004 * 7 6 5 10 10 C 1.46507 * 119.99901 * 184.61386 * 9 7 6 11 11 C 1.46506 * 120.00335 * 4.61635 * 9 7 6 12 12 C 1.39705 * 119.87144 * 0.23076 * 6 5 4 13 13 C 1.38283 * 119.83389 * 359.44689 * 12 6 5 14 14 N 1.40194 * 120.01800 * 180.29764 * 13 12 6 15 15 C 1.34774 * 120.00173 * 23.71957 * 14 13 12 16 16 O 1.21597 * 119.99871 * 4.20762 * 15 14 13 17 17 N 1.34775 * 120.00307 * 184.20380 * 15 14 13 18 18 C 1.46500 * 119.99971 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.46742 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00091 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99868 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99832 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00140 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46961 * 89.99924 * 23 21 19 25 25 H 1.48498 * 109.47347 * 209.99888 * 23 21 19 26 26 H 1.48505 * 109.47224 * 330.00323 * 23 21 19 27 27 H 1.08998 * 109.47220 * 299.99922 * 1 2 3 28 28 H 1.09004 * 109.47189 * 60.00783 * 1 2 3 29 29 H 1.09007 * 109.46835 * 179.97438 * 1 2 3 30 30 H 1.08009 * 119.91166 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.97901 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46625 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.46847 * 60.00603 * 10 9 7 34 34 H 1.08996 * 109.47047 * 300.00112 * 10 9 7 35 35 H 1.08993 * 109.47256 * 263.95638 * 11 9 7 36 36 H 1.09001 * 109.46654 * 23.95447 * 11 9 7 37 37 H 1.08997 * 109.47133 * 143.95003 * 11 9 7 38 38 H 1.08005 * 120.08208 * 179.75029 * 12 6 5 39 39 H 0.97003 * 119.99862 * 203.71974 * 14 13 12 40 40 H 0.97002 * 119.99646 * 0.02562 * 17 15 14 41 41 H 1.09003 * 109.47221 * 299.99912 * 18 17 15 42 42 H 1.08993 * 109.47042 * 60.00431 * 18 17 15 43 43 H 0.96994 * 119.99963 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2100 0.0000 4 6 1.2881 2.3733 -0.0005 5 6 1.9087 3.6035 0.0000 6 6 3.3035 3.6831 0.0001 7 6 3.9691 5.0007 0.0001 8 8 5.1117 5.1046 -0.4024 9 7 3.3102 6.0884 0.4463 10 6 3.9326 7.4114 0.3528 11 6 1.9716 5.9479 1.0249 12 6 4.0672 2.5133 -0.0052 13 6 3.4389 1.2815 0.0010 14 7 4.2015 0.1051 0.0020 15 6 5.4664 0.1224 0.4669 16 8 5.9206 1.1390 0.9558 17 7 6.2279 -0.9869 0.3900 18 6 7.6031 -0.9678 0.8948 19 6 8.2317 -2.3222 0.6911 20 1 7.6636 -3.1177 0.2319 21 6 9.5319 -2.5461 1.0918 22 7 10.2232 -1.5778 1.6524 23 14 10.3110 -4.2251 0.8399 24 1 10.9751 -4.2684 -0.4876 25 1 11.3168 -4.4689 1.9048 26 1 9.2603 -5.2727 0.9021 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2096 2.3139 -0.0005 31 1 1.3166 4.5067 0.0000 32 1 3.2549 8.1613 0.7608 33 1 4.1428 7.6410 -0.6918 34 1 4.8632 7.4160 0.9202 35 1 1.2221 6.1490 0.2596 36 1 1.8433 4.9331 1.4014 37 1 1.8537 6.6570 1.8442 38 1 5.1457 2.5709 -0.0092 39 1 3.8188 -0.7213 -0.3318 40 1 5.8657 -1.7977 -0.0003 41 1 8.1781 -0.2158 0.3545 42 1 7.5966 -0.7261 1.9576 43 1 11.1379 -1.7352 1.9339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488338583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:17 Heat of formation + Delta-G solvation = -68.653691 kcal Electronic energy + Delta-G solvation = -26753.924019 eV Core-core repulsion = 22800.030857 eV Total energy + Delta-G solvation = -3953.893163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13100 -41.05373 -40.39312 -38.13771 -36.89474 -36.27726 -35.76130 -34.40791 -31.59895 -31.32660 -29.31984 -28.87638 -27.98865 -27.16483 -25.12976 -23.79911 -23.57275 -21.91732 -21.02282 -19.90364 -19.16110 -18.80351 -18.15707 -17.60651 -17.21698 -17.05059 -16.70868 -16.65013 -16.48470 -16.21337 -15.71853 -15.31012 -15.19955 -14.80955 -14.67114 -14.21223 -14.17714 -14.06832 -13.89117 -13.74804 -13.46183 -13.30138 -13.07387 -12.90305 -12.73350 -12.57888 -12.23009 -12.05714 -11.86907 -11.60859 -11.50173 -11.07068 -10.99668 -10.82383 -9.99466 -9.84514 -9.56290 -8.80223 -8.30047 -6.47346 -0.15755 0.24286 1.41720 1.45763 1.55515 1.62657 1.66222 1.97577 2.12093 2.24266 2.38011 2.78206 3.04850 3.30859 3.53508 3.77063 3.91547 4.14062 4.28918 4.31848 4.41296 4.46967 4.47805 4.52816 4.71985 4.75643 4.82641 4.86163 4.90355 4.91529 5.04551 5.09690 5.21528 5.26986 5.34287 5.43442 5.51529 5.58624 5.70006 5.79822 6.11589 6.27015 6.35486 6.63331 7.07840 7.10972 7.22745 7.53994 8.82513 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003053 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.476189 B = 9168.917677 C =11041.662893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.129 3.871 4 C -0.181 4.181 5 C -0.069 4.069 6 C -0.171 4.171 7 C 0.548 3.452 8 O -0.593 6.593 9 N -0.614 5.614 10 C 0.086 3.914 11 C 0.049 3.951 12 C -0.075 4.075 13 C 0.113 3.887 14 N -0.664 5.664 15 C 0.688 3.312 16 O -0.625 6.625 17 N -0.713 5.713 18 C 0.285 3.715 19 C -0.556 4.556 20 H 0.086 0.914 21 C 0.003 3.997 22 N -0.931 5.931 23 Si 0.989 3.011 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.254 1.254 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.188 0.812 31 H 0.194 0.806 32 H 0.120 0.880 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.423 0.577 40 H 0.407 0.593 41 H -0.015 1.015 42 H -0.011 1.011 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.648 10.366 -3.743 32.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.080 3.920 4 C -0.200 4.200 5 C -0.088 4.088 6 C -0.175 4.175 7 C 0.339 3.661 8 O -0.475 6.475 9 N -0.346 5.346 10 C -0.056 4.056 11 C -0.092 4.092 12 C -0.097 4.097 13 C 0.017 3.983 14 N -0.313 5.313 15 C 0.388 3.612 16 O -0.506 6.506 17 N -0.367 5.367 18 C 0.162 3.838 19 C -0.594 4.594 20 H 0.104 0.896 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.812 3.188 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.177 1.177 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.135 0.865 30 H 0.205 0.795 31 H 0.211 0.789 32 H 0.139 0.861 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.262 0.738 40 H 0.243 0.757 41 H 0.003 0.997 42 H 0.007 0.993 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.345 11.125 -3.413 31.568 hybrid contribution 1.091 -1.154 -0.196 1.600 sum -28.253 9.971 -3.610 30.178 Atomic orbital electron populations 1.23504 0.75185 1.06006 1.03202 1.86003 1.24494 1.25666 1.88072 1.18916 0.88782 0.86885 0.97457 1.21457 1.01960 0.89633 1.06951 1.22290 0.91460 1.00526 0.94492 1.19605 0.95325 0.91389 1.11214 1.18667 0.84999 0.85251 0.77201 1.90774 1.20009 1.86661 1.50016 1.47740 1.19522 1.06738 1.60645 1.21781 0.99046 0.82741 1.02043 1.22904 0.81221 1.05093 0.99953 1.21244 1.01042 0.90684 0.96727 1.16942 0.88107 0.85769 1.07448 1.42232 1.11548 1.11828 1.65652 1.16306 0.81343 0.84239 0.79264 1.90851 1.73890 1.33241 1.52634 1.45315 1.14678 1.12255 1.64407 1.18482 0.76305 0.96879 0.92143 1.21584 0.98992 0.96708 1.42072 0.89593 1.26116 0.97443 1.02236 0.93906 1.70156 1.11020 1.35026 1.40775 0.85092 0.78148 0.77647 0.77909 1.19629 1.20850 1.17719 0.90735 0.90424 0.86504 0.79486 0.78922 0.86120 0.92721 0.94068 0.88389 0.89070 0.88662 0.86626 0.73846 0.75685 0.99674 0.99332 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -6.15 9.87 -91.21 -0.90 -7.05 16 3 C 0.13 2.94 6.71 22.72 0.15 3.10 16 4 C -0.18 -2.72 9.01 22.30 0.20 -2.52 16 5 C -0.07 -1.20 7.53 22.52 0.17 -1.03 16 6 C -0.17 -5.17 5.56 -20.09 -0.11 -5.28 16 7 C 0.55 18.14 7.51 86.72 0.65 18.80 16 8 O -0.59 -26.51 16.56 -3.97 -0.07 -26.57 16 9 N -0.61 -13.11 3.27 -875.61 -2.87 -15.97 16 10 C 0.09 1.54 10.17 127.77 1.30 2.84 16 11 C 0.05 0.45 8.62 127.77 1.10 1.55 16 12 C -0.07 -2.92 8.27 22.64 0.19 -2.73 16 13 C 0.11 3.78 6.46 38.13 0.25 4.02 16 14 N -0.66 -23.37 5.31 -316.90 -1.68 -25.06 16 15 C 0.69 31.93 8.40 179.06 1.50 33.43 16 16 O -0.62 -35.23 13.40 -4.02 -0.05 -35.28 16 17 N -0.71 -33.06 5.55 -482.30 -2.68 -35.74 16 18 C 0.28 16.62 5.43 85.63 0.46 17.08 16 19 C -0.56 -31.38 9.28 25.60 0.24 -31.14 16 20 H 0.09 4.36 7.60 -2.91 -0.02 4.33 16 21 C 0.00 0.15 5.46 84.66 0.46 0.61 16 22 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 23 Si 0.99 43.53 29.54 68.60 2.03 45.55 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 26 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 27 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 28 H 0.08 0.30 7.65 -2.39 -0.02 0.28 16 29 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.19 0.92 6.27 -2.91 -0.02 0.90 16 31 H 0.19 1.56 4.19 -2.91 -0.01 1.55 16 32 H 0.12 1.00 7.87 -2.39 -0.02 0.98 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.27 7.22 -2.39 -0.02 0.25 16 36 H 0.09 0.94 4.91 -2.39 -0.01 0.93 16 37 H 0.09 0.46 8.05 -2.39 -0.02 0.44 16 38 H 0.12 5.87 5.40 -2.91 -0.02 5.86 16 39 H 0.42 11.76 8.32 -92.71 -0.77 10.98 16 40 H 0.41 15.47 8.34 -92.71 -0.77 14.70 16 41 H -0.01 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -94.21 358.83 1.28 -92.93 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -0.46 Total: 25.12 kcal Atomic # 6 Polarization: 32.27 SS G_CDS: 7.68 Total: 39.95 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -6.94 Total: -134.65 kcal Atomic # 8 Polarization: -67.88 SS G_CDS: -1.02 Total: -68.90 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -94.21 1.28 -92.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488338583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.278 kcal (2) G-P(sol) polarization free energy of solvation -94.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds