Wall clock time and date at job start Tue Mar 31 2020 13:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00278 * 2 1 4 4 C 1.34784 * 119.99946 * 179.97438 * 2 1 3 5 5 O 1.21279 * 119.99644 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99896 * 180.02562 * 4 2 1 7 7 O 1.42905 * 109.46772 * 180.02562 * 6 4 2 8 8 C 1.35899 * 116.99866 * 180.02562 * 7 6 4 9 9 C 1.38803 * 120.01890 * 359.72232 * 8 7 6 10 10 C 1.38174 * 120.08249 * 179.70317 * 9 8 7 11 11 C 1.38166 * 120.11868 * 0.59673 * 10 9 8 12 12 C 1.38877 * 120.04386 * 359.68066 * 11 10 9 13 13 N 1.39943 * 120.04000 * 180.02562 * 12 11 10 14 14 C 1.34782 * 119.99589 * 213.27374 * 13 12 11 15 15 O 1.21587 * 120.00233 * 5.32106 * 14 13 12 16 16 N 1.34781 * 119.99691 * 185.31824 * 14 13 12 17 17 C 1.46495 * 119.99925 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47082 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99830 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99779 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00317 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47118 * 59.99552 * 22 20 18 24 24 H 1.48497 * 109.47418 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46866 * 299.99667 * 22 20 18 26 26 C 1.38581 * 120.01805 * 180.02562 * 8 7 6 27 27 H 1.09004 * 109.47693 * 270.00646 * 1 2 3 28 28 H 1.09000 * 109.46853 * 30.00571 * 1 2 3 29 29 H 1.08997 * 109.47208 * 150.00229 * 1 2 3 30 30 H 1.09005 * 109.46897 * 239.99853 * 3 2 1 31 31 H 1.09000 * 109.47022 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47384 * 119.99977 * 3 2 1 33 33 H 1.08998 * 109.47200 * 300.00170 * 6 4 2 34 34 H 1.08998 * 109.46959 * 60.00356 * 6 4 2 35 35 H 1.08003 * 119.96123 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.93661 * 180.28003 * 10 9 8 37 37 H 1.08009 * 119.97645 * 179.70213 * 11 10 9 38 38 H 0.96999 * 120.00193 * 33.27657 * 13 12 11 39 39 H 0.96994 * 119.99935 * 359.97438 * 16 14 13 40 40 H 1.08995 * 109.47236 * 300.00233 * 17 16 14 41 41 H 1.09007 * 109.46824 * 59.99695 * 17 16 14 42 42 H 0.97002 * 120.00291 * 180.02562 * 21 20 18 43 43 H 1.07991 * 120.06572 * 359.97199 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6458 -1.1673 0.0011 7 8 4.1221 -2.5146 0.0010 8 6 5.4694 -2.6927 0.0020 9 6 6.3153 -1.5923 -0.0027 10 6 7.6853 -1.7718 0.0045 11 6 8.2175 -3.0468 0.0040 12 6 7.3759 -4.1515 0.0030 13 7 7.9150 -5.4430 0.0030 14 6 7.2745 -6.4405 -0.6383 15 8 6.2811 -6.2007 -1.2971 16 7 7.7352 -7.7040 -0.5492 17 6 7.0394 -8.7882 -1.2467 18 6 7.7516 -10.0908 -0.9874 19 1 8.6345 -10.1090 -0.3657 20 6 7.2767 -11.2589 -1.5449 21 7 6.2024 -11.2365 -2.3032 22 14 8.1590 -12.8737 -1.2229 23 1 8.1686 -13.1502 0.2360 24 1 7.4538 -13.9727 -1.9300 25 1 9.5559 -12.7817 -1.7185 26 6 5.9994 -3.9731 0.0014 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.8242 1.3264 -0.8900 31 1 1.4892 2.0972 -0.0005 32 1 2.8241 1.3264 0.8899 33 1 4.0095 -0.6536 -0.8888 34 1 4.0088 -0.6533 0.8911 35 1 5.9022 -0.5944 -0.0076 36 1 8.3413 -0.9138 0.0054 37 1 9.2888 -3.1845 0.0048 38 1 8.7495 -5.6202 0.4646 39 1 8.5279 -7.8953 -0.0240 40 1 6.0143 -8.8555 -0.8826 41 1 7.0320 -8.5854 -2.3177 42 1 5.8680 -12.0584 -2.6951 43 1 5.3428 -4.8305 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488395125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:36 Heat of formation + Delta-G solvation = -61.002253 kcal Electronic energy + Delta-G solvation = -25792.852503 eV Core-core repulsion = 21839.291131 eV Total energy + Delta-G solvation = -3953.561371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.69676 -40.06982 -39.10546 -37.29128 -35.90175 -34.41753 -33.99673 -32.33251 -30.98230 -29.50062 -29.19440 -27.84524 -26.97360 -25.79726 -23.39806 -22.52330 -21.78607 -20.33413 -19.69530 -18.69484 -18.17735 -17.22801 -16.87004 -16.69939 -16.19747 -15.92316 -15.66362 -15.42297 -15.30226 -14.76139 -14.63129 -13.98966 -13.68358 -13.59328 -13.49296 -13.23219 -13.13731 -13.05806 -12.95284 -12.58066 -12.41400 -11.98170 -11.96760 -11.80779 -11.36566 -11.17075 -10.97399 -10.87312 -10.29725 -10.11619 -10.02423 -9.45200 -9.39325 -9.15624 -8.73357 -8.29158 -8.08484 -7.73522 -6.14373 -4.21758 1.37760 1.49962 2.20022 2.23271 3.06325 3.27046 3.31514 3.33099 3.39512 3.62142 4.03062 4.07857 4.33384 4.51001 4.61293 4.64395 4.81379 4.84425 4.90975 4.93708 5.04735 5.10704 5.17369 5.21384 5.21500 5.35734 5.44391 5.60307 5.92367 5.96874 6.27349 6.31021 6.45215 6.52532 6.79454 7.04370 7.05758 7.40592 7.42468 7.51269 7.55153 7.78582 7.83733 8.00686 8.69925 8.85100 9.20729 9.45084 10.95681 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.002266 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.253023 B =12354.697827 C =13832.355825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.513 3.487 5 O -0.506 6.506 6 C 0.046 3.954 7 O -0.288 6.288 8 C 0.146 3.854 9 C -0.238 4.238 10 C -0.061 4.061 11 C -0.191 4.191 12 C 0.223 3.777 13 N -0.694 5.694 14 C 0.688 3.312 15 O -0.576 6.576 16 N -0.721 5.721 17 C 0.265 3.735 18 C -0.545 4.545 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.151 4.151 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.405 0.595 39 H 0.388 0.612 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 29.258 7.385 30.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.361 5.361 3 C -0.069 4.069 4 C 0.300 3.700 5 O -0.379 6.379 6 C -0.033 4.033 7 O -0.200 6.200 8 C 0.100 3.900 9 C -0.258 4.258 10 C -0.080 4.080 11 C -0.212 4.212 12 C 0.126 3.874 13 N -0.342 5.342 14 C 0.388 3.612 15 O -0.453 6.453 16 N -0.373 5.373 17 C 0.145 3.855 18 C -0.583 4.583 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.733 3.267 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.173 4.173 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.241 0.759 39 H 0.221 0.779 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.041 28.438 6.625 29.357 hybrid contribution 1.342 -0.699 0.535 1.605 sum -1.700 27.738 7.160 28.698 Atomic orbital electron populations 1.21700 0.78331 1.03448 1.02104 1.47628 1.07362 1.05937 1.75179 1.21892 0.97615 0.85308 1.02057 1.20156 0.89156 0.83714 0.77021 1.90797 1.69681 1.30652 1.46809 1.22409 0.92302 0.84937 1.03619 1.86192 1.19453 1.25594 1.88744 1.18725 0.81439 0.93806 0.95988 1.21051 0.94450 0.97345 1.12972 1.20581 0.94064 0.96370 0.96978 1.20765 0.99364 0.91461 1.09617 1.17152 0.91240 0.83730 0.95298 1.42875 1.27518 1.06802 1.57016 1.16201 0.83496 0.81104 0.80407 1.90937 1.26843 1.82511 1.44962 1.45782 1.32091 1.05567 1.53815 1.19064 0.92571 0.81651 0.92248 1.21161 1.12851 0.91790 1.32499 0.91920 1.24950 0.95011 0.99350 0.94711 1.69969 1.22046 1.28491 1.31596 0.86450 0.79532 0.82300 0.78457 1.20071 1.21063 1.20093 1.20427 0.94312 0.95987 1.06529 0.92526 0.90963 0.90244 0.91731 0.89924 0.91760 0.88995 0.89043 0.85915 0.85613 0.85659 0.75949 0.77908 0.95392 0.95481 0.92331 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.41 59.84 0.62 1.20 16 2 N -0.62 -4.88 3.27 -189.52 -0.62 -5.50 16 3 C 0.07 0.25 9.74 59.85 0.58 0.83 16 4 C 0.51 6.12 7.75 -10.98 -0.09 6.03 16 5 O -0.51 -8.73 16.08 -14.35 -0.23 -8.96 16 6 C 0.05 0.47 4.04 36.01 0.15 0.61 16 7 O -0.29 -4.47 9.67 -39.33 -0.38 -4.85 16 8 C 0.15 2.19 6.68 -39.25 -0.26 1.93 16 9 C -0.24 -2.65 9.04 -39.40 -0.36 -3.01 16 10 C -0.06 -0.63 10.03 -39.63 -0.40 -1.03 16 11 C -0.19 -2.28 9.96 -39.37 -0.39 -2.68 16 12 C 0.22 3.47 6.28 -83.71 -0.53 2.94 16 13 N -0.69 -10.93 5.35 -14.24 -0.08 -11.01 16 14 C 0.69 14.47 8.30 -86.91 -0.72 13.75 16 15 O -0.58 -14.66 14.03 5.29 0.07 -14.59 16 16 N -0.72 -15.44 5.55 -66.41 -0.37 -15.81 16 17 C 0.27 7.16 5.43 -5.20 -0.03 7.13 16 18 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.88 -26.40 13.29 55.43 0.74 -25.67 16 22 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C -0.15 -2.67 8.59 -39.25 -0.34 -3.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.27 7.92 -51.93 -0.41 -0.14 16 29 H 0.08 0.70 7.42 -51.93 -0.39 0.31 16 30 H 0.06 0.16 7.85 -51.93 -0.41 -0.25 16 31 H 0.08 0.12 7.79 -51.93 -0.40 -0.28 16 32 H 0.06 0.15 7.85 -51.93 -0.41 -0.26 16 33 H 0.09 0.69 7.37 -51.93 -0.38 0.31 16 34 H 0.09 0.64 7.39 -51.93 -0.38 0.26 16 35 H 0.12 0.93 6.29 -52.48 -0.33 0.60 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.41 4.75 8.83 -40.82 -0.36 4.39 16 39 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.15 3.14 6.41 -52.49 -0.34 2.81 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -38.57 369.00 -8.30 -46.87 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.80 Total: 6.75 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -2.17 Total: 11.19 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.33 Total: -57.98 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.54 Total: -28.40 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.57 -8.30 -46.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488395125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.132 kcal (2) G-P(sol) polarization free energy of solvation -38.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds