Wall clock time and date at job start Tue Mar 31 2020 13:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00278 * 2 1 4 4 C 1.34784 * 119.99946 * 179.97438 * 2 1 3 5 5 O 1.21279 * 119.99644 * 0.02562 * 4 2 1 6 6 C 1.50700 * 119.99896 * 180.02562 * 4 2 1 7 7 O 1.42905 * 109.46772 * 180.02562 * 6 4 2 8 8 C 1.35899 * 116.99866 * 180.02562 * 7 6 4 9 9 C 1.38803 * 120.01890 * 359.72232 * 8 7 6 10 10 C 1.38174 * 120.08249 * 179.70317 * 9 8 7 11 11 C 1.38166 * 120.11868 * 0.59673 * 10 9 8 12 12 C 1.38877 * 120.04386 * 359.68066 * 11 10 9 13 13 N 1.39943 * 120.04000 * 180.02562 * 12 11 10 14 14 C 1.34782 * 119.99589 * 213.27374 * 13 12 11 15 15 O 1.21587 * 120.00233 * 5.32106 * 14 13 12 16 16 N 1.34781 * 119.99691 * 185.31824 * 14 13 12 17 17 C 1.46495 * 119.99925 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47082 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99830 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99779 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00317 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47118 * 59.99552 * 22 20 18 24 24 H 1.48497 * 109.47418 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46866 * 299.99667 * 22 20 18 26 26 C 1.38581 * 120.01805 * 180.02562 * 8 7 6 27 27 H 1.09004 * 109.47693 * 270.00646 * 1 2 3 28 28 H 1.09000 * 109.46853 * 30.00571 * 1 2 3 29 29 H 1.08997 * 109.47208 * 150.00229 * 1 2 3 30 30 H 1.09005 * 109.46897 * 239.99853 * 3 2 1 31 31 H 1.09000 * 109.47022 * 359.97438 * 3 2 1 32 32 H 1.08996 * 109.47384 * 119.99977 * 3 2 1 33 33 H 1.08998 * 109.47200 * 300.00170 * 6 4 2 34 34 H 1.08998 * 109.46959 * 60.00356 * 6 4 2 35 35 H 1.08003 * 119.96123 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.93661 * 180.28003 * 10 9 8 37 37 H 1.08009 * 119.97645 * 179.70213 * 11 10 9 38 38 H 0.96999 * 120.00193 * 33.27657 * 13 12 11 39 39 H 0.96994 * 119.99935 * 359.97438 * 16 14 13 40 40 H 1.08995 * 109.47236 * 300.00233 * 17 16 14 41 41 H 1.09007 * 109.46824 * 59.99695 * 17 16 14 42 42 H 0.97002 * 120.00291 * 180.02562 * 21 20 18 43 43 H 1.07991 * 120.06572 * 359.97199 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6458 -1.1673 0.0011 7 8 4.1221 -2.5146 0.0010 8 6 5.4694 -2.6927 0.0020 9 6 6.3153 -1.5923 -0.0027 10 6 7.6853 -1.7718 0.0045 11 6 8.2175 -3.0468 0.0040 12 6 7.3759 -4.1515 0.0030 13 7 7.9150 -5.4430 0.0030 14 6 7.2745 -6.4405 -0.6383 15 8 6.2811 -6.2007 -1.2971 16 7 7.7352 -7.7040 -0.5492 17 6 7.0394 -8.7882 -1.2467 18 6 7.7516 -10.0908 -0.9874 19 1 8.6345 -10.1090 -0.3657 20 6 7.2767 -11.2589 -1.5449 21 7 6.2024 -11.2365 -2.3032 22 14 8.1590 -12.8737 -1.2229 23 1 8.1686 -13.1502 0.2360 24 1 7.4538 -13.9727 -1.9300 25 1 9.5559 -12.7817 -1.7185 26 6 5.9994 -3.9731 0.0014 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.8242 1.3264 -0.8900 31 1 1.4892 2.0972 -0.0005 32 1 2.8241 1.3264 0.8899 33 1 4.0095 -0.6536 -0.8888 34 1 4.0088 -0.6533 0.8911 35 1 5.9022 -0.5944 -0.0076 36 1 8.3413 -0.9138 0.0054 37 1 9.2888 -3.1845 0.0048 38 1 8.7495 -5.6202 0.4646 39 1 8.5279 -7.8953 -0.0240 40 1 6.0143 -8.8555 -0.8826 41 1 7.0320 -8.5854 -2.3177 42 1 5.8680 -12.0584 -2.6951 43 1 5.3428 -4.8305 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488395125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:35 Heat of formation + Delta-G solvation = -91.460341 kcal Electronic energy + Delta-G solvation = -25794.173265 eV Core-core repulsion = 21839.291131 eV Total energy + Delta-G solvation = -3954.882133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81849 -41.24879 -40.27497 -38.46039 -36.67838 -36.25726 -35.52599 -34.36233 -31.91654 -30.64726 -30.15238 -28.90371 -28.34188 -26.45028 -25.11980 -23.84504 -23.01689 -21.91086 -20.55157 -19.96569 -19.64910 -18.13561 -18.09186 -17.65504 -17.54471 -17.21950 -16.79449 -16.70483 -16.48534 -16.14188 -16.03943 -15.50302 -15.07743 -14.66801 -14.48012 -14.32542 -14.11464 -14.06367 -13.92187 -13.63498 -13.52187 -13.40120 -12.93874 -12.86018 -12.70988 -12.67857 -12.39420 -12.25538 -12.18116 -11.53043 -11.34878 -11.15896 -10.98895 -10.81503 -9.97028 -9.79463 -9.39446 -8.97964 -8.29913 -6.47519 0.31863 0.48632 1.37816 1.41567 1.45058 1.47652 1.55559 1.71710 2.07429 2.37770 2.52980 2.87182 3.04858 3.34777 3.42381 3.87538 4.01034 4.04262 4.17855 4.28521 4.30784 4.35385 4.43379 4.48456 4.57653 4.74239 4.76429 4.88118 4.95221 5.02541 5.21103 5.30121 5.34108 5.37905 5.41734 5.42788 5.51104 5.62821 5.79896 5.88467 6.14432 6.16997 6.44718 6.63348 6.99065 7.14302 7.23217 7.56502 8.82325 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.002266 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.253023 B =12354.697827 C =13832.355825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.614 5.614 3 C 0.062 3.938 4 C 0.501 3.499 5 O -0.582 6.582 6 C 0.042 3.958 7 O -0.332 6.332 8 C 0.131 3.869 9 C -0.219 4.219 10 C -0.046 4.046 11 C -0.179 4.179 12 C 0.194 3.806 13 N -0.671 5.671 14 C 0.688 3.312 15 O -0.627 6.627 16 N -0.713 5.713 17 C 0.285 3.715 18 C -0.556 4.556 19 H 0.088 0.912 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.990 3.010 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.259 1.259 26 C -0.197 4.197 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.159 0.841 38 H 0.427 0.573 39 H 0.409 0.591 40 H -0.016 1.016 41 H -0.012 1.012 42 H 0.269 0.731 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 33.052 8.670 34.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.349 5.349 3 C -0.079 4.079 4 C 0.289 3.711 5 O -0.461 6.461 6 C -0.035 4.035 7 O -0.246 6.246 8 C 0.086 3.914 9 C -0.238 4.238 10 C -0.065 4.065 11 C -0.199 4.199 12 C 0.098 3.902 13 N -0.321 5.321 14 C 0.388 3.612 15 O -0.508 6.508 16 N -0.367 5.367 17 C 0.161 3.839 18 C -0.594 4.594 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.813 3.187 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.184 1.184 26 C -0.218 4.218 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.187 0.813 36 H 0.196 0.804 37 H 0.177 0.823 38 H 0.266 0.734 39 H 0.245 0.755 40 H 0.002 0.998 41 H 0.006 0.994 42 H 0.078 0.922 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.561 32.364 7.970 33.336 hybrid contribution 0.148 -1.593 0.151 1.607 sum 0.708 30.772 8.122 31.833 Atomic orbital electron populations 1.21834 0.78064 1.03699 1.02568 1.47814 1.07919 1.06428 1.72714 1.22299 0.98433 0.83389 1.03732 1.20733 0.90223 0.83869 0.76318 1.90763 1.71105 1.33482 1.50796 1.22784 0.90863 0.83080 1.06776 1.86139 1.20188 1.29237 1.89040 1.18861 0.81888 0.93954 0.96724 1.21550 0.94489 0.97823 1.09958 1.21229 0.94267 0.97094 0.93862 1.21170 1.00490 0.90724 1.07555 1.17452 0.90977 0.84201 0.97576 1.42447 1.27617 1.06053 1.55996 1.16348 0.82962 0.81675 0.80221 1.90912 1.29243 1.83384 1.47251 1.45304 1.32548 1.04895 1.53962 1.18465 0.91266 0.83896 0.90234 1.21563 1.13476 0.91647 1.32720 0.89437 1.26137 0.95670 1.03989 0.94046 1.70154 1.24129 1.29786 1.32960 0.85132 0.78456 0.76295 0.78853 1.18630 1.21164 1.18360 1.20281 0.95083 0.95926 1.10552 0.92005 0.87274 0.93346 0.90131 0.87561 0.89887 0.85779 0.85177 0.81310 0.80424 0.82320 0.73401 0.75535 0.99826 0.99441 0.92204 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 10.41 127.77 1.33 2.38 16 2 N -0.61 -8.82 3.27 -871.90 -2.85 -11.67 16 3 C 0.06 0.17 9.74 127.77 1.24 1.42 16 4 C 0.50 12.22 7.75 87.66 0.68 12.90 16 5 O -0.58 -22.11 16.08 16.01 0.26 -21.85 16 6 C 0.04 0.79 4.04 71.24 0.29 1.08 16 7 O -0.33 -10.87 9.67 -73.38 -0.71 -11.58 16 8 C 0.13 3.97 6.68 22.49 0.15 4.12 16 9 C -0.22 -3.98 9.04 22.39 0.20 -3.78 16 10 C -0.05 -0.70 10.03 22.24 0.22 -0.48 16 11 C -0.18 -3.64 9.96 22.41 0.22 -3.42 16 12 C 0.19 6.07 6.28 38.13 0.24 6.31 16 13 N -0.67 -21.60 5.35 -317.22 -1.70 -23.30 16 14 C 0.69 30.91 8.30 179.05 1.49 32.39 16 15 O -0.63 -35.19 14.03 -3.99 -0.06 -35.24 16 16 N -0.71 -32.12 5.55 -482.30 -2.68 -34.79 16 17 C 0.28 16.43 5.43 85.63 0.46 16.90 16 18 C -0.56 -31.10 9.28 25.60 0.24 -30.86 16 19 H 0.09 4.35 7.60 -2.91 -0.02 4.33 16 20 C 0.00 0.07 5.46 84.65 0.46 0.53 16 21 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 22 Si 0.99 43.25 29.54 68.60 2.03 45.28 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 26 C -0.20 -7.51 8.59 22.48 0.19 -7.32 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.11 0.58 7.92 -2.39 -0.02 0.57 16 29 H 0.05 0.95 7.42 -2.39 -0.02 0.93 16 30 H 0.08 0.03 7.85 -2.38 -0.02 0.01 16 31 H 0.11 -0.16 7.79 -2.39 -0.02 -0.18 16 32 H 0.08 -0.02 7.85 -2.39 -0.02 -0.04 16 33 H 0.12 1.45 7.37 -2.39 -0.02 1.43 16 34 H 0.13 1.34 7.39 -2.39 -0.02 1.32 16 35 H 0.17 1.44 6.29 -2.91 -0.02 1.42 16 36 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 37 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.43 9.55 8.83 -92.71 -0.82 8.73 16 39 H 0.41 14.74 8.34 -92.71 -0.77 13.96 16 40 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 41 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.09 4.45 6.41 -2.92 -0.02 4.43 16 Total: -1.00 -98.26 369.00 1.46 -96.80 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.53 Total: 22.02 kcal Atomic # 6 Polarization: 24.75 SS G_CDS: 7.42 Total: 32.17 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -6.94 Total: -127.59 kcal Atomic # 8 Polarization: -68.16 SS G_CDS: -0.51 Total: -68.67 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -98.26 1.46 -96.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488395125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.335 kcal (2) G-P(sol) polarization free energy of solvation -98.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds