Wall clock time and date at job start Tue Mar 31 2020 13:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35991 * 117.00149 * 2 1 4 4 C 1.38115 * 120.00640 * 359.97438 * 3 2 1 5 5 C 1.39760 * 119.86132 * 180.02562 * 4 3 2 6 6 C 1.47590 * 120.05362 * 179.97438 * 5 4 3 7 7 O 1.21588 * 120.00099 * 329.26237 * 6 5 4 8 8 N 1.34770 * 119.99872 * 149.26350 * 6 5 4 9 9 C 1.46503 * 120.00114 * 174.51814 * 8 6 5 10 10 C 1.46502 * 120.00192 * 354.51531 * 8 6 5 11 11 C 1.39724 * 119.88599 * 359.97438 * 5 4 3 12 12 C 1.37744 * 120.02099 * 359.74226 * 11 5 4 13 13 C 1.38979 * 120.13389 * 0.51508 * 12 11 5 14 14 N 1.39628 * 119.94223 * 179.76248 * 13 12 11 15 15 C 1.34779 * 120.00202 * 335.76755 * 14 13 12 16 16 O 1.21583 * 119.99374 * 354.53102 * 15 14 13 17 17 N 1.34771 * 120.00164 * 174.25123 * 15 14 13 18 18 C 1.46507 * 119.99944 * 180.27981 * 17 15 14 19 19 C 1.50699 * 109.46756 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00362 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99431 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99804 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47137 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46738 * 120.00081 * 23 21 19 26 26 H 1.48497 * 109.47164 * 239.99989 * 23 21 19 27 27 H 1.08997 * 109.47275 * 299.99490 * 1 2 3 28 28 H 1.09006 * 109.47656 * 59.99771 * 1 2 3 29 29 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.06985 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47003 * 89.99866 * 9 8 6 32 32 H 1.08994 * 109.47380 * 209.99963 * 9 8 6 33 33 H 1.08997 * 109.46877 * 330.00467 * 9 8 6 34 34 H 1.08996 * 109.47020 * 92.92335 * 10 8 6 35 35 H 1.09001 * 109.47204 * 212.92068 * 10 8 6 36 36 H 1.09000 * 109.47144 * 332.92251 * 10 8 6 37 37 H 1.08007 * 119.98575 * 180.02562 * 11 5 4 38 38 H 1.07991 * 119.93206 * 180.24956 * 12 11 5 39 39 H 0.96997 * 120.00323 * 155.77203 * 14 13 12 40 40 H 0.97002 * 120.00017 * 0.27607 * 17 15 14 41 41 H 1.09001 * 109.47008 * 299.99955 * 18 17 15 42 42 H 1.09002 * 109.46996 * 59.99915 * 18 17 15 43 43 H 0.97003 * 119.99752 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2943 2.3701 -0.0005 5 6 1.9320 3.6137 -0.0011 6 6 1.1325 4.8543 -0.0022 7 8 0.0426 4.8747 -0.5409 8 7 1.6105 5.9646 0.5938 9 6 0.8738 7.2267 0.4900 10 6 2.8667 5.9094 1.3455 11 6 3.3276 3.6805 -0.0005 12 6 4.0730 2.5222 0.0059 13 6 3.4398 1.2850 0.0011 14 7 4.1993 0.1134 0.0026 15 6 5.4612 0.1276 -0.4708 16 8 5.9043 1.1338 -0.9898 17 7 6.2335 -0.9716 -0.3636 18 6 7.6072 -0.9541 -0.8727 19 6 8.2490 -2.2963 -0.6324 20 1 7.6898 -3.0834 -0.1485 21 6 9.5501 -2.5193 -1.0303 22 7 10.2312 -1.5606 -1.6191 23 14 10.3461 -4.1827 -0.7318 24 1 9.3756 -5.0819 -0.0575 25 1 10.7516 -4.7776 -2.0306 26 1 11.5435 -4.0111 0.1294 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2157 2.3150 -0.0014 31 1 0.1697 7.3056 1.3184 32 1 1.5746 8.0606 0.5281 33 1 0.3289 7.2527 -0.4536 34 1 3.6944 6.1804 0.6902 35 1 2.8211 6.6079 2.1811 36 1 3.0192 4.8989 1.7246 37 1 3.8221 4.6407 -0.0005 38 1 5.1516 2.5755 0.0104 39 1 3.8188 -0.7108 0.3443 40 1 5.8799 -1.7743 0.0505 41 1 7.5957 -0.7435 -1.9421 42 1 8.1762 -0.1811 -0.3562 43 1 11.1467 -1.7174 -1.8987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488940116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:21 Heat of formation + Delta-G solvation = -52.648180 kcal Electronic energy + Delta-G solvation = -26529.610527 eV Core-core repulsion = 22576.411415 eV Total energy + Delta-G solvation = -3953.199111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99164 -39.91996 -39.14012 -37.13438 -35.82380 -34.71319 -34.18494 -32.43300 -30.42313 -30.24741 -28.39261 -27.38148 -27.21099 -26.18999 -23.59917 -22.45490 -22.24161 -20.37566 -20.09755 -18.36085 -18.16037 -17.68885 -16.56416 -16.37043 -16.09363 -15.89474 -15.77411 -15.62121 -15.01774 -14.91790 -14.35524 -14.08727 -13.94934 -13.64687 -13.48913 -13.16145 -13.05837 -12.95239 -12.67790 -12.55825 -12.24001 -12.04985 -11.97112 -11.67748 -11.50371 -11.16989 -10.97184 -10.96282 -10.36903 -10.31290 -10.08104 -9.46432 -9.42270 -8.98444 -8.80379 -8.62209 -8.08518 -7.61419 -6.20844 -4.27738 0.82840 1.35614 2.62484 2.76599 2.98334 3.16809 3.21404 3.29206 3.32289 3.52807 3.93285 4.28051 4.31602 4.69154 4.78225 4.81933 4.90540 4.96718 4.99994 5.01714 5.12247 5.15803 5.18586 5.31181 5.34126 5.42649 5.47161 5.49883 5.82910 5.88413 6.05559 6.19389 6.29259 6.52866 6.81749 6.96145 7.06684 7.27128 7.34010 7.45179 7.47003 7.76486 7.93897 7.94871 8.62190 8.77472 9.10000 9.39166 10.89317 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.002543 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.710679 B =11008.739352 C =12153.091680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.074 3.926 4 C -0.127 4.127 5 C -0.138 4.138 6 C 0.565 3.435 7 O -0.542 6.542 8 N -0.619 5.619 9 C 0.087 3.913 10 C 0.069 3.931 11 C -0.101 4.101 12 C -0.114 4.114 13 C 0.192 3.808 14 N -0.682 5.682 15 C 0.691 3.309 16 O -0.580 6.580 17 N -0.718 5.718 18 C 0.265 3.735 19 C -0.544 4.544 20 H 0.064 0.936 21 C 0.064 3.936 22 N -0.884 5.884 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.138 0.862 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.140 0.860 38 H 0.167 0.833 39 H 0.409 0.591 40 H 0.390 0.610 41 H 0.028 0.972 42 H 0.029 0.971 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.852 11.176 8.129 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.026 3.974 4 C -0.147 4.147 5 C -0.143 4.143 6 C 0.355 3.645 7 O -0.420 6.420 8 N -0.353 5.353 9 C -0.055 4.055 10 C -0.073 4.073 11 C -0.120 4.120 12 C -0.135 4.135 13 C 0.093 3.907 14 N -0.327 5.327 15 C 0.391 3.609 16 O -0.458 6.458 17 N -0.370 5.370 18 C 0.144 3.856 19 C -0.582 4.582 20 H 0.082 0.918 21 C -0.140 4.140 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.157 0.843 38 H 0.184 0.816 39 H 0.245 0.755 40 H 0.223 0.777 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.603 11.872 7.278 23.237 hybrid contribution -0.044 -1.494 0.435 1.557 sum -18.647 10.378 7.713 22.691 Atomic orbital electron populations 1.23046 0.78161 1.03906 1.01478 1.86019 1.21491 1.26013 1.89595 1.18439 0.90198 0.84936 1.03792 1.20910 1.00025 0.90179 1.03585 1.19419 0.93628 0.92426 1.08825 1.18343 0.85252 0.83171 0.77701 1.90756 1.21175 1.84497 1.45568 1.47599 1.24859 1.09719 1.53105 1.21633 0.96595 0.84419 1.02888 1.22274 0.85098 1.04097 0.95877 1.21557 0.91988 0.99343 0.99116 1.21470 1.02770 0.89055 1.00184 1.17154 0.86381 0.87347 0.99795 1.42663 1.13705 1.11032 1.65346 1.16145 0.79931 0.85239 0.79592 1.90829 1.72978 1.32371 1.49661 1.45817 1.16107 1.12438 1.62604 1.19091 0.73937 0.97582 0.94961 1.21239 0.98334 0.97658 1.40963 0.91788 1.24942 0.96900 0.97476 0.94667 1.69982 1.10767 1.32356 1.39066 0.86343 0.79281 0.83139 0.78036 1.19642 1.20779 1.20768 0.92724 0.92500 0.88170 0.84456 0.92730 0.91081 0.90576 0.91808 0.91169 0.89502 0.84256 0.81593 0.75511 0.77740 0.95400 0.95337 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.81 9.88 -19.71 -0.19 -4.01 16 3 C 0.07 0.99 6.70 -39.14 -0.26 0.73 16 4 C -0.13 -1.62 8.58 -39.06 -0.34 -1.96 16 5 C -0.14 -1.78 5.31 -104.96 -0.56 -2.34 16 6 C 0.57 7.37 7.40 -12.45 -0.09 7.28 16 7 O -0.54 -8.67 16.36 5.29 0.09 -8.58 16 8 N -0.62 -6.07 3.27 -190.74 -0.62 -6.69 16 9 C 0.09 0.67 10.41 59.85 0.62 1.29 16 10 C 0.07 0.48 8.77 59.85 0.52 1.01 16 11 C -0.10 -1.25 7.56 -39.21 -0.30 -1.54 16 12 C -0.11 -1.70 8.70 -39.49 -0.34 -2.04 16 13 C 0.19 2.91 6.45 -83.55 -0.54 2.37 16 14 N -0.68 -10.61 5.28 -14.11 -0.07 -10.68 16 15 C 0.69 13.62 8.37 -86.92 -0.73 12.89 16 16 O -0.58 -13.31 13.45 5.29 0.07 -13.24 16 17 N -0.72 -14.67 5.55 -66.41 -0.37 -15.04 16 18 C 0.26 6.80 5.43 -5.19 -0.03 6.77 16 19 C -0.54 -14.36 9.28 -34.44 -0.32 -14.68 16 20 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.88 -25.52 13.29 55.43 0.74 -24.78 16 23 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 28 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.14 1.61 6.16 -52.49 -0.32 1.28 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.08 0.68 7.50 -51.93 -0.39 0.29 16 34 H 0.06 0.39 6.88 -51.93 -0.36 0.03 16 35 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.09 0.66 5.69 -51.93 -0.30 0.36 16 37 H 0.14 1.39 4.97 -52.48 -0.26 1.12 16 38 H 0.17 2.80 5.71 -52.49 -0.30 2.50 16 39 H 0.41 5.30 8.32 -40.82 -0.34 4.96 16 40 H 0.39 6.78 8.34 -40.82 -0.34 6.44 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -34.20 359.70 -6.89 -41.09 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.47 Total: 8.40 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.46 Total: 12.66 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.33 Total: -57.19 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.04 Total: -25.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.20 -6.89 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488940116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.555 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds