Wall clock time and date at job start Tue Mar 31 2020 13:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35991 * 117.00149 * 2 1 4 4 C 1.38115 * 120.00640 * 359.97438 * 3 2 1 5 5 C 1.39760 * 119.86132 * 180.02562 * 4 3 2 6 6 C 1.47590 * 120.05362 * 179.97438 * 5 4 3 7 7 O 1.21588 * 120.00099 * 329.26237 * 6 5 4 8 8 N 1.34770 * 119.99872 * 149.26350 * 6 5 4 9 9 C 1.46503 * 120.00114 * 174.51814 * 8 6 5 10 10 C 1.46502 * 120.00192 * 354.51531 * 8 6 5 11 11 C 1.39724 * 119.88599 * 359.97438 * 5 4 3 12 12 C 1.37744 * 120.02099 * 359.74226 * 11 5 4 13 13 C 1.38979 * 120.13389 * 0.51508 * 12 11 5 14 14 N 1.39628 * 119.94223 * 179.76248 * 13 12 11 15 15 C 1.34779 * 120.00202 * 335.76755 * 14 13 12 16 16 O 1.21583 * 119.99374 * 354.53102 * 15 14 13 17 17 N 1.34771 * 120.00164 * 174.25123 * 15 14 13 18 18 C 1.46507 * 119.99944 * 180.27981 * 17 15 14 19 19 C 1.50699 * 109.46756 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00362 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99431 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00155 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99804 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47137 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46738 * 120.00081 * 23 21 19 26 26 H 1.48497 * 109.47164 * 239.99989 * 23 21 19 27 27 H 1.08997 * 109.47275 * 299.99490 * 1 2 3 28 28 H 1.09006 * 109.47656 * 59.99771 * 1 2 3 29 29 H 1.09001 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.06985 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47003 * 89.99866 * 9 8 6 32 32 H 1.08994 * 109.47380 * 209.99963 * 9 8 6 33 33 H 1.08997 * 109.46877 * 330.00467 * 9 8 6 34 34 H 1.08996 * 109.47020 * 92.92335 * 10 8 6 35 35 H 1.09001 * 109.47204 * 212.92068 * 10 8 6 36 36 H 1.09000 * 109.47144 * 332.92251 * 10 8 6 37 37 H 1.08007 * 119.98575 * 180.02562 * 11 5 4 38 38 H 1.07991 * 119.93206 * 180.24956 * 12 11 5 39 39 H 0.96997 * 120.00323 * 155.77203 * 14 13 12 40 40 H 0.97002 * 120.00017 * 0.27607 * 17 15 14 41 41 H 1.09001 * 109.47008 * 299.99955 * 18 17 15 42 42 H 1.09002 * 109.46996 * 59.99915 * 18 17 15 43 43 H 0.97003 * 119.99752 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2943 2.3701 -0.0005 5 6 1.9320 3.6137 -0.0011 6 6 1.1325 4.8543 -0.0022 7 8 0.0426 4.8747 -0.5409 8 7 1.6105 5.9646 0.5938 9 6 0.8738 7.2267 0.4900 10 6 2.8667 5.9094 1.3455 11 6 3.3276 3.6805 -0.0005 12 6 4.0730 2.5222 0.0059 13 6 3.4398 1.2850 0.0011 14 7 4.1993 0.1134 0.0026 15 6 5.4612 0.1276 -0.4708 16 8 5.9043 1.1338 -0.9898 17 7 6.2335 -0.9716 -0.3636 18 6 7.6072 -0.9541 -0.8727 19 6 8.2490 -2.2963 -0.6324 20 1 7.6898 -3.0834 -0.1485 21 6 9.5501 -2.5193 -1.0303 22 7 10.2312 -1.5606 -1.6191 23 14 10.3461 -4.1827 -0.7318 24 1 9.3756 -5.0819 -0.0575 25 1 10.7516 -4.7776 -2.0306 26 1 11.5435 -4.0111 0.1294 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2157 2.3150 -0.0014 31 1 0.1697 7.3056 1.3184 32 1 1.5746 8.0606 0.5281 33 1 0.3289 7.2527 -0.4536 34 1 3.6944 6.1804 0.6902 35 1 2.8211 6.6079 2.1811 36 1 3.0192 4.8989 1.7246 37 1 3.8221 4.6407 -0.0005 38 1 5.1516 2.5755 0.0104 39 1 3.8188 -0.7108 0.3443 40 1 5.8799 -1.7743 0.0505 41 1 7.5957 -0.7435 -1.9421 42 1 8.1762 -0.1811 -0.3562 43 1 11.1467 -1.7174 -1.8987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488940116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:20 Heat of formation + Delta-G solvation = -78.172422 kcal Electronic energy + Delta-G solvation = -26530.717341 eV Core-core repulsion = 22576.411415 eV Total energy + Delta-G solvation = -3954.305926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12984 -41.11057 -40.29011 -38.22138 -36.71693 -36.29414 -35.77998 -34.37598 -31.45360 -31.40881 -29.30787 -28.89966 -28.06237 -27.12377 -25.13927 -23.78851 -23.48398 -21.90269 -21.07709 -19.87666 -19.19894 -18.87485 -18.02307 -17.51288 -17.23770 -16.86013 -16.81294 -16.68893 -16.52832 -16.37566 -15.92576 -15.27077 -14.98041 -14.88595 -14.57490 -14.44501 -14.09066 -14.02810 -13.84381 -13.71082 -13.45549 -13.32032 -12.91379 -12.86439 -12.75174 -12.49061 -12.43491 -12.20355 -12.03911 -11.63572 -11.43848 -11.21363 -10.96455 -10.80102 -9.95759 -9.78170 -9.63754 -8.81727 -8.27787 -6.43418 -0.26472 0.30340 1.44673 1.46032 1.54972 1.59074 1.65539 1.95788 2.11137 2.23148 2.39790 2.73852 3.07861 3.31494 3.43168 3.71630 3.97218 4.05382 4.27422 4.31672 4.35179 4.39201 4.43781 4.48317 4.71244 4.73905 4.76491 4.86048 4.91150 4.93175 5.00427 5.10247 5.21118 5.28013 5.32949 5.46213 5.48105 5.61758 5.70644 5.83775 6.12301 6.21844 6.28532 6.67226 7.00571 7.11090 7.26057 7.54275 8.84456 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020437 B = 0.002543 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.710679 B =11008.739352 C =12153.091680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.085 3.915 4 C -0.129 4.129 5 C -0.136 4.136 6 C 0.559 3.441 7 O -0.579 6.579 8 N -0.613 5.613 9 C 0.082 3.918 10 C 0.061 3.939 11 C -0.090 4.090 12 C -0.125 4.125 13 C 0.163 3.837 14 N -0.664 5.664 15 C 0.693 3.307 16 O -0.616 6.616 17 N -0.713 5.713 18 C 0.284 3.716 19 C -0.554 4.554 20 H 0.083 0.917 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.983 3.017 24 H -0.254 1.254 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.150 0.850 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.423 0.577 40 H 0.407 0.593 41 H -0.010 1.010 42 H -0.005 1.005 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.097 10.709 9.534 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.037 3.963 4 C -0.149 4.149 5 C -0.141 4.141 6 C 0.349 3.651 7 O -0.461 6.461 8 N -0.345 5.345 9 C -0.059 4.059 10 C -0.080 4.080 11 C -0.109 4.109 12 C -0.146 4.146 13 C 0.065 3.935 14 N -0.311 5.311 15 C 0.394 3.606 16 O -0.497 6.497 17 N -0.366 5.366 18 C 0.162 3.838 19 C -0.592 4.592 20 H 0.101 0.899 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.807 3.193 24 H -0.178 1.178 25 H -0.206 1.206 26 H -0.204 1.204 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.167 0.833 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.181 0.819 38 H 0.161 0.839 39 H 0.261 0.739 40 H 0.242 0.758 41 H 0.008 0.992 42 H 0.013 0.987 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.911 11.415 8.741 24.559 hybrid contribution 0.206 -1.198 0.032 1.216 sum -19.705 10.216 8.773 23.867 Atomic orbital electron populations 1.23362 0.76069 1.05844 1.02144 1.86013 1.23589 1.25226 1.89262 1.18354 0.89500 0.85749 1.02707 1.21091 1.00663 0.89993 1.03168 1.19586 0.93782 0.92810 1.07877 1.18383 0.84865 0.83921 0.77927 1.90737 1.22620 1.85156 1.47538 1.47752 1.25462 1.09440 1.51819 1.21821 0.97441 0.84255 1.02431 1.22489 0.84122 1.04655 0.96784 1.21688 0.91747 0.99496 0.97950 1.21332 1.01863 0.90129 1.01263 1.17340 0.87199 0.87007 1.01911 1.42279 1.12075 1.12071 1.64649 1.16181 0.80939 0.84294 0.79227 1.90814 1.74140 1.33585 1.51150 1.45378 1.14614 1.13620 1.63030 1.18510 0.76201 0.96783 0.92349 1.21618 0.98794 0.98023 1.40789 0.89864 1.26007 0.97611 1.01682 0.94120 1.70132 1.11298 1.34984 1.40311 0.85130 0.78288 0.77978 0.77927 1.17783 1.20612 1.20426 0.91455 0.92397 0.85696 0.83276 0.91770 0.87985 0.92197 0.90501 0.88343 0.90163 0.81936 0.83882 0.73906 0.75768 0.99205 0.98701 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.37 9.88 -93.44 -0.92 -8.29 16 3 C 0.08 2.21 6.70 22.55 0.15 2.36 16 4 C -0.13 -3.18 8.58 22.61 0.19 -2.98 16 5 C -0.14 -3.38 5.31 -20.08 -0.11 -3.49 16 6 C 0.56 14.00 7.40 86.71 0.64 14.64 16 7 O -0.58 -18.26 16.36 -3.99 -0.07 -18.33 16 8 N -0.61 -10.81 3.27 -875.65 -2.87 -13.68 16 9 C 0.08 1.09 10.41 127.77 1.33 2.42 16 10 C 0.06 0.69 8.77 127.77 1.12 1.81 16 11 C -0.09 -2.17 7.56 22.51 0.17 -1.99 16 12 C -0.13 -3.78 8.70 22.33 0.19 -3.58 16 13 C 0.16 4.94 6.45 38.39 0.25 5.19 16 14 N -0.66 -20.71 5.28 -316.83 -1.67 -22.38 16 15 C 0.69 28.09 8.37 179.06 1.50 29.59 16 16 O -0.62 -29.60 13.45 -3.98 -0.05 -29.65 16 17 N -0.71 -29.71 5.55 -482.29 -2.68 -32.39 16 18 C 0.28 15.19 5.43 85.63 0.46 15.66 16 19 C -0.55 -29.44 9.28 25.60 0.24 -29.21 16 20 H 0.08 4.01 7.60 -2.91 -0.02 3.98 16 21 C 0.01 0.31 5.46 84.66 0.46 0.77 16 22 N -0.93 -54.89 13.29 21.45 0.28 -54.61 16 23 Si 0.98 41.62 29.54 68.60 2.03 43.65 16 24 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 27 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 28 H 0.06 0.84 7.66 -2.38 -0.02 0.83 16 29 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.15 3.29 6.16 -2.91 -0.02 3.27 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 33 H 0.06 1.02 7.50 -2.39 -0.02 1.00 16 34 H 0.08 0.72 6.88 -2.39 -0.02 0.70 16 35 H 0.10 0.62 8.09 -2.39 -0.02 0.60 16 36 H 0.08 1.06 5.69 -2.39 -0.01 1.04 16 37 H 0.16 3.02 4.97 -2.91 -0.01 3.00 16 38 H 0.14 5.07 5.71 -2.91 -0.02 5.05 16 39 H 0.42 10.63 8.32 -92.71 -0.77 9.86 16 40 H 0.41 13.97 8.34 -92.71 -0.77 13.20 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -76.53 359.70 1.30 -75.23 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.47 Total: 27.88 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: 7.72 Total: 32.57 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -6.93 Total: -123.05 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -1.04 Total: -56.28 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -76.53 1.30 -75.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488940116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.947 kcal (2) G-P(sol) polarization free energy of solvation -76.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds