Wall clock time and date at job start Tue Mar 31 2020 13:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34759 * 117.00270 * 2 1 4 4 O 1.21507 * 119.99491 * 0.02562 * 3 2 1 5 5 C 1.47449 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.39781 * 120.05777 * 359.97438 * 5 3 2 7 7 C 1.37754 * 120.05150 * 179.74422 * 6 5 3 8 8 C 1.38940 * 120.15935 * 0.55482 * 7 6 5 9 9 N 1.39639 * 119.94391 * 179.71564 * 8 7 6 10 10 C 1.34773 * 120.00214 * 335.14561 * 9 8 7 11 11 O 1.21583 * 119.99858 * 354.37123 * 10 9 8 12 12 N 1.34773 * 120.00127 * 174.09249 * 10 9 8 13 13 C 1.46495 * 120.00055 * 180.27062 * 12 10 9 14 14 C 1.50706 * 109.47093 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99953 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99588 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00262 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99586 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46910 * 89.99894 * 18 16 14 20 20 H 1.48501 * 109.47038 * 209.99921 * 18 16 14 21 21 H 1.48497 * 109.47025 * 330.00030 * 18 16 14 22 22 C 1.39703 * 120.11207 * 359.44724 * 8 7 6 23 23 N 1.39958 * 120.02874 * 180.29406 * 22 8 7 24 24 C 1.46901 * 111.00096 * 119.99466 * 23 22 8 25 25 C 1.46895 * 111.00318 * 243.95653 * 23 22 8 26 26 C 1.38257 * 119.94971 * 0.27329 * 22 8 7 27 27 H 1.08994 * 109.47750 * 59.99500 * 1 2 3 28 28 H 1.08999 * 109.47131 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46848 * 299.99720 * 1 2 3 30 30 H 1.08007 * 119.97160 * 0.02562 * 6 5 3 31 31 H 1.08000 * 119.92380 * 180.27252 * 7 6 5 32 32 H 0.97000 * 119.99808 * 155.13562 * 9 8 7 33 33 H 0.97003 * 119.99977 * 0.28064 * 12 10 9 34 34 H 1.08999 * 109.47488 * 300.00398 * 13 12 10 35 35 H 1.09007 * 109.46667 * 60.00641 * 13 12 10 36 36 H 0.97005 * 119.99777 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46648 * 63.95757 * 24 23 22 38 38 H 1.08999 * 109.47476 * 183.95459 * 24 23 22 39 39 H 1.09000 * 109.47434 * 303.95865 * 24 23 22 40 40 H 1.08999 * 109.47763 * 56.04143 * 25 23 22 41 41 H 1.09002 * 109.47450 * 176.04788 * 25 23 22 42 42 H 1.09002 * 109.47051 * 296.04397 * 25 23 22 43 43 H 1.07996 * 120.08072 * 179.97438 * 26 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5363 1.2778 -0.0006 6 6 4.2987 0.1063 -0.0006 7 6 5.6744 0.1785 -0.0064 8 6 6.3085 1.4148 -0.0007 9 7 7.7032 1.4827 -0.0007 10 6 8.4280 0.4554 0.4849 11 8 7.8696 -0.4851 1.0158 12 7 9.7713 0.4680 0.3770 13 6 10.5587 -0.6514 0.8995 14 6 12.0232 -0.3928 0.6552 15 1 12.3360 0.5148 0.1607 16 6 12.9634 -1.3150 1.0632 17 7 12.5823 -2.4205 1.6650 18 14 14.7787 -0.9941 0.7611 19 1 15.3524 -0.2659 1.9212 20 1 15.4880 -2.2873 0.5884 21 1 14.9388 -0.1740 -0.4665 22 6 5.5531 2.5900 -0.0007 23 7 6.1937 3.8343 -0.0011 24 6 5.8247 4.6160 -1.1889 25 6 5.8998 4.5783 1.2309 26 6 4.1722 2.5228 -0.0006 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.8089 -0.8563 -0.0006 31 1 6.2615 -0.7280 -0.0109 32 1 8.1505 2.2693 -0.3503 33 1 10.2169 1.2184 -0.0466 34 1 10.3815 -0.7518 1.9702 35 1 10.2626 -1.5709 0.3943 36 1 13.2440 -3.0691 1.9523 37 1 4.7578 4.8379 -1.1607 38 1 6.3894 5.5482 -1.2003 39 1 6.0528 4.0420 -2.0870 40 1 6.1826 3.9768 2.0949 41 1 6.4651 5.5102 1.2363 42 1 4.8335 4.7999 1.2759 43 1 3.5861 3.4300 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489081204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:43 Heat of formation + Delta-G solvation = -70.986830 kcal Electronic energy + Delta-G solvation = -26538.725713 eV Core-core repulsion = 22584.731378 eV Total energy + Delta-G solvation = -3953.994335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96075 -40.22065 -38.95272 -36.71624 -36.43287 -34.73668 -34.18528 -32.43719 -30.29329 -30.06345 -27.93771 -27.79439 -27.03297 -24.78004 -24.11311 -22.57809 -21.82998 -20.73729 -20.25279 -18.32653 -18.02131 -17.69355 -16.99491 -16.49507 -16.08292 -15.71381 -15.54804 -15.20646 -14.96392 -14.88015 -14.28002 -13.97805 -13.94067 -13.72162 -13.60654 -13.14778 -12.80327 -12.76302 -12.52383 -12.42473 -12.20935 -12.04274 -11.94592 -11.88718 -11.42913 -11.00996 -11.00400 -10.94143 -10.73018 -10.37830 -10.33088 -9.52507 -9.44325 -8.93887 -8.81784 -8.79411 -8.19426 -7.78742 -6.20721 -4.27820 0.64196 1.21621 2.41046 2.54131 3.04029 3.22264 3.29011 3.31370 3.48702 3.62111 3.89608 4.28411 4.63009 4.74501 4.81660 4.87146 4.91554 4.94413 5.06209 5.10634 5.15858 5.19440 5.25272 5.29626 5.33987 5.46980 5.64188 5.71273 5.83179 5.93631 6.08708 6.20829 6.26212 6.51482 6.60784 6.79400 6.96985 7.20425 7.32289 7.45138 7.46474 7.60650 7.76406 7.93751 8.61137 8.76696 9.08236 9.38985 10.89370 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.002635 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.571256 B =10624.909886 C =11868.448994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.515 3.485 4 O -0.519 6.519 5 C -0.163 4.163 6 C -0.034 4.034 7 C -0.149 4.149 8 C 0.256 3.744 9 N -0.675 5.675 10 C 0.688 3.312 11 O -0.579 6.579 12 N -0.717 5.717 13 C 0.265 3.735 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.020 3.980 23 N -0.503 5.503 24 C 0.024 3.976 25 C 0.028 3.972 26 C -0.054 4.054 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.140 0.860 31 H 0.165 0.835 32 H 0.414 0.586 33 H 0.390 0.610 34 H 0.028 0.972 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.871 11.165 -5.484 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.362 3.638 4 O -0.409 6.409 5 C -0.166 4.166 6 C -0.053 4.053 7 C -0.170 4.170 8 C 0.154 3.846 9 N -0.319 5.319 10 C 0.389 3.611 11 O -0.457 6.457 12 N -0.368 5.368 13 C 0.144 3.856 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.139 4.139 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.078 4.078 23 N -0.224 5.224 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.075 4.075 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.158 0.842 31 H 0.182 0.818 32 H 0.250 0.750 33 H 0.223 0.777 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.805 10.289 -4.915 21.992 hybrid contribution 0.335 1.130 -0.370 1.236 sum -18.470 11.420 -5.285 22.349 Atomic orbital electron populations 1.23257 0.76212 1.03713 1.02471 1.86573 1.23358 1.32754 1.84398 1.21190 0.89180 0.81244 0.72186 1.90808 1.66991 1.36088 1.47004 1.18778 0.88594 0.94666 1.14596 1.21371 0.93264 0.97713 0.92977 1.21578 0.94291 0.98319 1.02814 1.17724 0.82540 0.92384 0.91984 1.42806 1.03977 1.21303 1.63843 1.16200 0.82830 0.82351 0.79761 1.90852 1.70299 1.35350 1.49171 1.45825 1.03289 1.25870 1.61832 1.19090 0.88615 0.83060 0.94788 1.21197 0.90473 1.06070 1.40537 0.91830 1.24936 0.99601 0.94733 0.94674 1.69970 1.34571 1.09104 1.38516 0.86398 0.83999 0.77750 0.78661 1.20444 1.20981 1.19743 1.18210 0.89880 0.90017 1.09648 1.59532 1.57435 1.01812 1.03633 1.22516 0.99222 0.98143 0.92403 1.22470 0.99458 0.98476 0.91482 1.21341 0.93768 0.96989 0.95430 0.91950 0.87983 0.91934 0.84193 0.81777 0.74977 0.77699 0.95401 0.95323 0.92371 0.94932 0.90721 0.91040 0.90927 0.90740 0.94967 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -4.00 9.80 -40.65 -0.40 -4.39 16 3 C 0.52 6.71 7.89 34.48 0.27 6.98 16 4 O -0.52 -7.66 16.13 -19.27 -0.31 -7.97 16 5 C -0.16 -2.10 5.87 -104.99 -0.62 -2.72 16 6 C -0.03 -0.44 9.60 -39.18 -0.38 -0.81 16 7 C -0.15 -2.22 8.69 -39.50 -0.34 -2.56 16 8 C 0.26 3.70 6.45 -83.50 -0.54 3.16 16 9 N -0.68 -10.07 5.26 -14.08 -0.07 -10.14 16 10 C 0.69 13.27 8.36 -86.92 -0.73 12.54 16 11 O -0.58 -13.11 13.49 5.29 0.07 -13.04 16 12 N -0.72 -14.40 5.55 -66.41 -0.37 -14.77 16 13 C 0.27 6.75 5.43 -5.19 -0.03 6.72 16 14 C -0.54 -14.30 9.28 -34.44 -0.32 -14.62 16 15 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.88 -25.45 13.29 55.43 0.74 -24.72 16 18 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C 0.02 0.24 4.73 -83.59 -0.40 -0.15 16 23 N -0.50 -5.31 4.30 -186.72 -0.80 -6.11 16 24 C 0.02 0.20 9.28 60.07 0.56 0.76 16 25 C 0.03 0.26 9.33 60.06 0.56 0.82 16 26 C -0.05 -0.67 8.19 -38.99 -0.32 -0.99 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.14 1.56 7.60 -52.48 -0.40 1.16 16 31 H 0.17 2.80 5.76 -52.49 -0.30 2.50 16 32 H 0.41 5.17 8.27 -40.82 -0.34 4.83 16 33 H 0.39 6.67 8.34 -40.82 -0.34 6.33 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.03 0.27 7.26 -51.93 -0.38 -0.11 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 40 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.29 7.47 -51.93 -0.39 -0.10 16 43 H 0.13 1.56 6.65 -52.49 -0.35 1.21 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -32.12 368.30 -7.75 -39.87 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.83 Total: 8.19 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -1.30 Total: 12.16 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.51 Total: -55.73 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.64 Total: -25.41 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.12 -7.75 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489081204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.115 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds